Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010664.1 Kokia drynarioides strain JFW-HI SEQ_125609, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4736
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.33


Found at i:3164 original size:14 final size:14

Alignment explanation


    Indices: 3147--3190  Score: 56
    Period size: 13  Copynumber: 3.2  Consensus size: 14

       3137 TAAAAGGGAG

                          
       3147 AAAATTAAAATATA
          1 AAAATTAAAATATA

                          
       3161 AAAATT-AAAT-TA
          1 AAAATTAAAATATA

                 *         
       3173 AAAATGAAAATAGTA
          1 AAAATTAAAATA-TA

               
       3188 AAA
          1 AAA

       3191 CAAAAATAAA


Statistics
Matches: 26,  Mismatches: 1, Indels: 5
        0.81            0.03        0.16

Matches are distributed among these distances:
  12    7  0.27
  13    8  0.31
  14    6  0.23
  15    5  0.19

ACGTcount: A:0.70, C:0.00, G:0.05, T:0.25


Consensus pattern (14 bp):   
AAAATTAAAATATA
Done.