Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010668.1 Kokia drynarioides strain JFW-HI SEQ_125613, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 831

Length: 1386
ACGTcount: A:0.39, C:0.13, G:0.11, T:0.37


Found at i:100 original size:47 final size:47

Alignment explanation


    Indices: 23--114  Score: 148
    Period size: 47  Copynumber: 2.0  Consensus size: 47

         13 GGAGAAGCCC

                                     *           *         
         23 TTTTTTAATGCCAAATCTGGTCAAGTTATATAACATATTATGATGCT
          1 TTTTTTAATGCCAAATCTGGTCAAGCTATATAACATACTATGATGCT

                            *    *                       
         70 TTTTTTAATGCCAAATTTGGTGAAGCTATATAACATACTATGATG
          1 TTTTTTAATGCCAAATCTGGTCAAGCTATATAACATACTATGATG

        115 GTCTATGTTT


Statistics
Matches: 41,  Mismatches: 4, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  47   41  1.00

ACGTcount: A:0.33, C:0.12, G:0.14, T:0.41


Consensus pattern (47 bp):   
TTTTTTAATGCCAAATCTGGTCAAGCTATATAACATACTATGATGCT
Done.