Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001067.1 Kokia drynarioides strain JFW-HI SEQ_112318, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1866
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.29


Found at i:202 original size:15 final size:17

Alignment explanation


    Indices: 173--205  Score: 52
    Period size: 15  Copynumber: 2.1  Consensus size: 17

        163 GGAAGCTATT

                             
        173 GAAACGGAGATGCTTGA
          1 GAAACGGAGATGCTTGA

                             
        190 GAAA-GGAGA-GCTTGA
          1 GAAACGGAGATGCTTGA

             
        205 G
          1 G

        206 CTAGGATTGC


Statistics
Matches: 16,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  15    7  0.44
  16    5  0.31
  17    4  0.25

ACGTcount: A:0.36, C:0.09, G:0.39, T:0.15


Consensus pattern (17 bp):   
GAAACGGAGATGCTTGA

Done.