genome.fa.s10677.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010677.1 Kokia drynarioides strain JFW-HI SEQ_125623, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26898

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1250--1302	20	2.7	20	81	0	70	67	5	7	18	1.35
2493--3712	84	14.5	84	91	2	1941	47	4	5	42	1.47
3816--3894	12	5.9	12	77	21	77	41	6	0	51	1.27
3826--3879	16	3.6	16	80	19	80	44	7	0	48	1.31
3816--3894	40	2.0	39	82	9	97	41	6	0	51	1.27
3816--3891	28	2.7	28	97	0	143	42	6	0	51	1.28
6812--6869	24	2.5	22	78	15	62	36	1	0	62	1.06
7626--7875	60	4.2	59	76	10	220	40	14	17	28	1.88
7598--7875	121	2.3	119	85	7	355	38	15	17	28	1.90
7657--7876	60	3.6	60	78	11	241	37	15	18	28	1.91
7861--7892	16	2.0	16	93	0	55	59	21	0	18	1.38
7801--7944	79	1.9	76	87	10	211	43	18	13	25	1.86
7908--7968	29	2.1	28	91	5	104	32	21	27	18	1.96
7915--7973	29	2.0	29	100	0	118	32	23	27	16	1.96
7964--8169	106	1.9	108	85	8	287	37	16	14	31	1.88
8082--8199	60	2.0	60	83	6	150	38	16	16	27	1.90
8640--8677	20	1.9	20	94	0	67	31	5	13	50	1.63
8964--9025	19	3.3	19	74	0	61	25	0	1	72	0.94
10580--10710	30	4.4	29	82	7	140	36	3	22	37	1.70
10542--10711	58	2.9	58	81	8	184	34	3	22	38	1.72
10542--10717	60	3.0	58	81	7	185	35	3	23	37	1.72
10580--10717	29	4.7	29	85	5	170	37	2	23	35	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11365--11399	2	17.5	2	100	0	70	0	0	48	51	1.00
12457--12656	48	4.4	48	72	14	156	24	25	13	37	1.91
12505--12660	85	1.8	85	87	5	235	25	23	14	37	1.92
12371--12656	133	2.1	133	87	3	405	24	24	14	37	1.92
12700--12868	48	3.8	46	74	16	158	23	20	17	39	1.92
12700--12865	85	2.0	85	88	0	251	23	20	16	39	1.92
12505--13119	208	3.0	208	88	1	882	22	20	17	39	1.92
12907--13073	85	2.0	85	87	0	244	22	22	17	37	1.94
15138--15222	36	2.4	36	91	0	143	32	18	25	22	1.97
16792--17035	85	2.9	85	84	4	305	24	21	15	39	1.91
17084--17250	48	3.5	48	86	4	214	26	22	12	38	1.89
17722--17882	85	1.9	85	87	2	234	22	21	14	40	1.90
17654--18557	208	4.3	208	87	1	1204	22	19	17	40	1.91
17929--18090	85	1.9	85	84	2	218	22	21	14	41	1.89
16877--18557	416	4.0	418	76	10	1569	23	19	16	40	1.91
18127--18218	48	1.9	48	84	0	121	22	19	16	41	1.90
18137--18303	85	2.0	85	85	2	228	21	18	19	40	1.91
18346--18502	85	1.8	85	87	0	233	21	23	15	39	1.91
18602--18769	90	1.9	91	87	3	250	22	23	14	39	1.91
19970--19999	8	3.6	8	91	8	51	10	0	0	90	0.47
19970--20000	9	3.6	9	95	4	55	9	0	0	90	0.46
20871--20910	14	2.8	14	85	14	55	2	12	0	85	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24431--24614	30	6.2	30	77	5	167	40	2	22	35	1.66
24422--24614	60	3.2	59	78	5	199	38	2	22	36	1.68

Tables:   1

The End!