Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010679.1 Kokia drynarioides strain JFW-HI SEQ_125625, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 963

Length: 1606
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30


Found at i:176 original size:45 final size:45

Alignment explanation


    Indices: 111--247  Score: 193
    Period size: 45  Copynumber: 3.0  Consensus size: 45

        101 GCATAGCTCA

                                                         
        111 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC
          1 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC

                           *       *             *       
        156 TCAAGCCAAGGATATTAGCCTCAATTTGACGAGCCACTGCAATAC
          1 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC

                 **           *  *              *   *    
        201 TCAAGGGAAGGATATCAGGCTGAGTTTGACGAGCCATCGCGATAC
          1 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC

              
        246 TC
          1 TC

        248 TATTCCTCCA


Statistics
Matches: 80,  Mismatches: 12, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  45   80  1.00

ACGTcount: A:0.31, C:0.26, G:0.23, T:0.20


Consensus pattern (45 bp):   
TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC
Done.