Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010680.1 Kokia drynarioides strain JFW-HI SEQ_125626, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4808
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.37

Warning! 10 characters in sequence are not A, C, G, or T


Found at i:497 original size:3 final size:3

Alignment explanation


    Indices: 489--515  Score: 54
    Period size: 3  Copynumber: 9.0  Consensus size: 3

        479 AATAGTGTAA

                                               
        489 ATT ATT ATT ATT ATT ATT ATT ATT ATT
          1 ATT ATT ATT ATT ATT ATT ATT ATT ATT

        516 GTAGCTAGCA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   24  1.00

ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67


Consensus pattern (3 bp):   
ATT

Found at i:3137 original size:18 final size:18

Alignment explanation


    Indices: 3114--3161  Score: 60
    Period size: 18  Copynumber: 2.7  Consensus size: 18

       3104 ACAATTCATA

                              
       3114 TCACTTTCAATTCCAATT
          1 TCACTTTCAATTCCAATT

                     *  *  *  
       3132 TCACTTTCACTTTCACTT
          1 TCACTTTCAATTCCAATT

             *          
       3150 TTACTTTCAATT
          1 TCACTTTCAATT

       3162 TTGATCACAA


Statistics
Matches: 25,  Mismatches: 5, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  18   25  1.00

ACGTcount: A:0.23, C:0.27, G:0.00, T:0.50


Consensus pattern (18 bp):   
TCACTTTCAATTCCAATT

Found at i:3139 original size:6 final size:6

Alignment explanation


    Indices: 3114--3158  Score: 54
    Period size: 6  Copynumber: 7.5  Consensus size: 6

       3104 ACAATTCATA

                      *   *  *                         *        
       3114 TCACTT TCAATT CCAATT TCACTT TCACTT TCACTT TTACTT TCA
          1 TCACTT TCACTT TCACTT TCACTT TCACTT TCACTT TCACTT TCA

       3159 ATTTTGATCA


Statistics
Matches: 33,  Mismatches: 6, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
   6   33  1.00

ACGTcount: A:0.22, C:0.29, G:0.00, T:0.49


Consensus pattern (6 bp):   
TCACTT

Done.