Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010683.1 Kokia drynarioides strain JFW-HI SEQ_125629, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8675
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.33


Found at i:3004 original size:39 final size:39

Alignment explanation


    Indices: 2922--3004  Score: 105
    Period size: 39  Copynumber: 2.1  Consensus size: 39

       2912 ATCGGTAGTG

                 *           *                    *
       2922 ACACTGTAAACACTACATTGTTATACGAAAATGGCAATG
          1 ACACTATAAACACTACAATGTTATACGAAAATGGCAATC

                                           *    *   
       2961 ACACTATAAACACTACAATGTTATACTG-AACTGGCGATC
          1 ACACTATAAACACTACAATGTTATAC-GAAAATGGCAATC

                 
       3000 ACACT
          1 ACACT

       3005 GGAAATATCG


Statistics
Matches: 38,  Mismatches: 5, Indels: 2
        0.84            0.11        0.04

Matches are distributed among these distances:
  39   37  0.97
  40    1  0.03

ACGTcount: A:0.40, C:0.22, G:0.13, T:0.25


Consensus pattern (39 bp):   
ACACTATAAACACTACAATGTTATACGAAAATGGCAATC
Done.