genome.fa.s10684.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010684.1 Kokia drynarioides strain JFW-HI SEQ_125630, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53575

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117--147	2	15.5	2	100	0	62	51	0	0	48	1.00
147--201	27	2.0	28	85	3	76	74	3	14	7	1.17
621--656	18	2.1	18	89	5	56	41	0	25	33	1.55
6845--6878	18	1.9	18	88	5	52	26	5	23	44	1.76
10858--10903	20	2.2	21	78	21	53	47	6	2	43	1.41
11232--11281	17	3.0	17	77	11	59	54	2	0	44	1.11
15815--15886	36	2.0	36	91	0	117	25	15	12	47	1.80
17778--17802	13	1.9	13	100	0	50	60	0	0	40	0.97
17867--17896	7	4.3	7	100	0	60	16	40	30	13	1.87
23467--23492	6	4.3	6	100	0	52	80	0	0	19	0.71
31403--31447	23	2.0	23	82	8	56	35	0	0	64	0.94
38523--38590	21	3.3	21	66	12	59	63	11	5	19	1.48
38796--38860	30	2.1	32	83	13	82	20	0	12	67	1.22
38838--38923	23	3.6	23	76	11	100	29	0	9	61	1.27
38893--38942	11	4.5	11	78	14	57	26	0	8	66	1.19
39024--39199	58	3.1	57	84	6	232	27	13	6	52	1.64
39044--39199	54	2.8	58	88	4	230	27	12	5	53	1.61
41902--41940	18	2.1	19	85	4	53	71	0	0	28	0.86
45199--45739	272	2.0	271	97	0	1028	24	19	19	35	1.95
47296--47339	20	2.2	20	100	0	88	31	20	9	38	1.84
48060--48110	18	2.8	18	79	8	59	49	0	0	50	1.00
50734--50857	23	5.3	23	82	10	101	13	23	19	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50754--50857	23	4.4	23	85	6	129	13	21	21	44	1.86
50767--50902	69	2.0	68	83	11	170	13	20	20	44	1.85
52619--52697	25	3.0	26	65	17	72	53	16	6	24	1.66
52593--52697	53	2.0	53	98	1	203	54	15	5	24	1.63

Tables:   1

The End!