Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010685.1 Kokia drynarioides strain JFW-HI SEQ_125631, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4883
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.34


Found at i:3688 original size:29 final size:30

Alignment explanation


    Indices: 3624--3703  Score: 92
    Period size: 30  Copynumber: 2.7  Consensus size: 30

       3614 TGATGTTTAT

                         *  *             
       3624 TAATTTTTGGAAGATTCGGGGTCAAAAATG
          1 TAATTTTTGGAAGTTTAGGGGTCAAAAATG

            **                             
       3654 GGATTTTTGGAAGTTTAGGGGT--AAAATAG
          1 TAATTTTTGGAAGTTTAGGGGTCAAAAAT-G

                                 
       3683 TAATTTTTGGAAGGTTTAGGG
          1 TAATTTTTGGAA-GTTTAGGG

       3704 ATCTTCGGGG


Statistics
Matches: 42,  Mismatches: 6, Indels: 4
        0.81            0.12        0.08

Matches are distributed among these distances:
  28    5  0.12
  29   11  0.26
  30   26  0.62

ACGTcount: A:0.30, C:0.03, G:0.31, T:0.36


Consensus pattern (30 bp):   
TAATTTTTGGAAGTTTAGGGGTCAAAAATG
Done.