Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010697.1 Kokia drynarioides strain JFW-HI SEQ_125644, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 25568
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:768 original size:26 final size:26

Alignment explanation


    Indices: 739--792  Score: 108
    Period size: 26  Copynumber: 2.1  Consensus size: 26

        729 AATTTAAGGG

                                      
        739 ATAGGCTAATCTCATCCGTTGATGTA
          1 ATAGGCTAATCTCATCCGTTGATGTA

                                      
        765 ATAGGCTAATCTCATCCGTTGATGTA
          1 ATAGGCTAATCTCATCCGTTGATGTA

              
        791 AT
          1 AT

        793 TTGATCCTTA


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   28  1.00

ACGTcount: A:0.28, C:0.19, G:0.19, T:0.35


Consensus pattern (26 bp):   
ATAGGCTAATCTCATCCGTTGATGTA

Found at i:8485 original size:29 final size:29

Alignment explanation


    Indices: 8442--8499  Score: 98
    Period size: 29  Copynumber: 2.0  Consensus size: 29

       8432 CAAGAAAGAT

                      *                  
       8442 CTTTTAAAACCAGCCTAAATTTTAAGTAC
          1 CTTTTAAAACAAGCCTAAATTTTAAGTAC

                            *            
       8471 CTTTTAAAACAAGCCTTAATTTTAAGTAC
          1 CTTTTAAAACAAGCCTAAATTTTAAGTAC

       8500 TTATTTGTTC


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  29   27  1.00

ACGTcount: A:0.38, C:0.19, G:0.07, T:0.36


Consensus pattern (29 bp):   
CTTTTAAAACAAGCCTAAATTTTAAGTAC
Done.