Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010698.1 Kokia drynarioides strain JFW-HI SEQ_125645, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 913

Length: 1522
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.31


Found at i:553 original size:14 final size:14

Alignment explanation


    Indices: 534--564  Score: 62
    Period size: 14  Copynumber: 2.2  Consensus size: 14

        524 CTAAAATATC

                          
        534 ATTTTAGCATAAAA
          1 ATTTTAGCATAAAA

                          
        548 ATTTTAGCATAAAA
          1 ATTTTAGCATAAAA

               
        562 ATT
          1 ATT

        565 ATATATCCTC


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   17  1.00

ACGTcount: A:0.48, C:0.06, G:0.06, T:0.39


Consensus pattern (14 bp):   
ATTTTAGCATAAAA

Found at i:852 original size:45 final size:45

Alignment explanation


    Indices: 801--1013  Score: 302
    Period size: 45  Copynumber: 4.7  Consensus size: 45

        791 ATCGCGATGC

                     * *  *           **       *        * 
        801 CTCGTCAAACTCAGCCTGATATCCTTCTCTAT-AGTATTGCGGTTG
          1 CTCGTCAAATTGAGGCTGATATCCTTGGCT-TGAGCATTGCGGTGG

                                                         
        846 CTCGTCAAATTGAGGCTGATATCCTTGGCTTGAGCATTGCGGTGG
          1 CTCGTCAAATTGAGGCTGATATCCTTGGCTTGAGCATTGCGGTGG

            *                                      *     
        891 GTCGTCAAATTGAGGCTGATATCCTTGGCTTGAGCATTGTGGTGG
          1 CTCGTCAAATTGAGGCTGATATCCTTGGCTTGAGCATTGCGGTGG

                                                  *      
        936 CTCGTCAAATTGAGGCTGATATCCTTGGCTTGAGCATTACGGTGG
          1 CTCGTCAAATTGAGGCTGATATCCTTGGCTTGAGCATTGCGGTGG

                     *                 *     
        981 CTCGTCAAACTGAGGCTGATATCCTTGCCTTGA
          1 CTCGTCAAATTGAGGCTGATATCCTTGGCTTGA

       1014 TGAGCTATGC


Statistics
Matches: 153,  Mismatches: 14, Indels: 2
        0.91            0.08        0.01

Matches are distributed among these distances:
  44    1  0.01
  45  152  0.99

ACGTcount: A:0.19, C:0.22, G:0.27, T:0.32


Consensus pattern (45 bp):   
CTCGTCAAATTGAGGCTGATATCCTTGGCTTGAGCATTGCGGTGG

Done.