Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001070.1 Kokia drynarioides strain JFW-HI SEQ_112323, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 874

Length: 1457
ACGTcount: A:0.37, C:0.09, G:0.21, T:0.33


Found at i:520 original size:18 final size:17

Alignment explanation


    Indices: 488--521  Score: 50
    Period size: 17  Copynumber: 1.9  Consensus size: 17

        478 TAAATGAGTT

                 *           
        488 AATTAGGATTAAATTGA
          1 AATTAAGATTAAATTGA

                             
        505 AATTAAGATATAAATTG
          1 AATTAAGAT-TAAATTG

        522 GATAGAAATT


Statistics
Matches: 15,  Mismatches: 1, Indels: 1
        0.88            0.06        0.06

Matches are distributed among these distances:
  17    8  0.53
  18    7  0.47

ACGTcount: A:0.50, C:0.00, G:0.15, T:0.35


Consensus pattern (17 bp):   
AATTAAGATTAAATTGA
Done.