Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01010702.1 Kokia drynarioides strain JFW-HI SEQ_125649, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 121196
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Warning! 126 characters in sequence are not A, C, G, or T
Found at i:5134 original size:29 final size:30
Alignment explanation
Indices: 5090--5147 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 30
5080 TTTGAATTGC
* * *
5090 AATTAGAGTTTCATGTGTATAATTGCACAA
1 AATTAAAGTTTCATGTATAAAATTGCACAA
5120 AATTAAAG-TTCATGTATAAAATTGCACA
1 AATTAAAGTTTCATGTATAAAATTGCACA
5148 TTAAATCAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 18 0.72
30 7 0.28
ACGTcount: A:0.41, C:0.10, G:0.14, T:0.34
Consensus pattern (30 bp):
AATTAAAGTTTCATGTATAAAATTGCACAA
Found at i:5171 original size:29 final size:29
Alignment explanation
Indices: 5100--5171 Score: 76
Period size: 29 Copynumber: 2.5 Consensus size: 29
5090 AATTAGAGTT
* * *
5100 TCATGTGTATAATTGCACAAAATTAAAGT
1 TCATGTATATAATTGCACAAAATCAAAGC
*
5129 TCATGTATAAAATTGCACATTAAATCAAAGC
1 TCATGTATATAATTGCACA--AAATCAAAGC
5160 TCA-G-ATATAATT
1 TCATGTATATAATT
5172 TTGATATTTA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
29 24 0.67
30 1 0.03
31 11 0.31
ACGTcount: A:0.43, C:0.12, G:0.11, T:0.33
Consensus pattern (29 bp):
TCATGTATATAATTGCACAAAATCAAAGC
Found at i:6867 original size:21 final size:22
Alignment explanation
Indices: 6821--6868 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 22
6811 AAATAGTTTT
6821 TAATGAAAATTTGGATCAATCA
1 TAATGAAAATTTGGATCAATCA
* * *
6843 -AATGAAAGTTTGTAT-AATGA
1 TAATGAAAATTTGGATCAATCA
6863 TAATGA
1 TAATGA
6869 GAATGATGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.46, C:0.04, G:0.17, T:0.33
Consensus pattern (22 bp):
TAATGAAAATTTGGATCAATCA
Found at i:8225 original size:52 final size:52
Alignment explanation
Indices: 8165--8269 Score: 210
Period size: 52 Copynumber: 2.0 Consensus size: 52
8155 AATGTTAGGA
8165 GTTCTAATCTCTAATGAGTGTTTTCTAAGGTTGTAAAAAAACTCATTTATAG
1 GTTCTAATCTCTAATGAGTGTTTTCTAAGGTTGTAAAAAAACTCATTTATAG
8217 GTTCTAATCTCTAATGAGTGTTTTCTAAGGTTGTAAAAAAACTCATTTATAG
1 GTTCTAATCTCTAATGAGTGTTTTCTAAGGTTGTAAAAAAACTCATTTATAG
8269 G
1 G
8270 CTAAATTCTT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.32, C:0.11, G:0.16, T:0.40
Consensus pattern (52 bp):
GTTCTAATCTCTAATGAGTGTTTTCTAAGGTTGTAAAAAAACTCATTTATAG
Found at i:10267 original size:24 final size:24
Alignment explanation
Indices: 10240--10286 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
10230 AGTGTTTGAC
*
10240 TGAAACAAATAAACATAGTTTAAT
1 TGAAACAAATAAACAGAGTTTAAT
*
10264 TGAAACAAATAAATAGAGTTTAA
1 TGAAACAAATAAACAGAGTTTAA
10287 ATGGAAGATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.55, C:0.06, G:0.11, T:0.28
Consensus pattern (24 bp):
TGAAACAAATAAACAGAGTTTAAT
Found at i:12675 original size:23 final size:24
Alignment explanation
Indices: 12649--12693 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
12639 ATTTAATCCC
12649 TTAAAAAATGATAAAA-TCATAAA
1 TTAAAAAATGATAAAATTCATAAA
* *
12672 TTAATACATGATAAAATTCATA
1 TTAAAAAATGATAAAATTCATA
12694 TTTAACCTCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 14 0.74
24 5 0.26
ACGTcount: A:0.58, C:0.07, G:0.04, T:0.31
Consensus pattern (24 bp):
TTAAAAAATGATAAAATTCATAAA
Found at i:17665 original size:20 final size:20
Alignment explanation
Indices: 17628--17667 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
17618 AACAACTTGA
*
17628 ATATTCTTTCTTAAATATGT
1 ATATTCTTTCATAAATATGT
17648 ATATT-TTTCATAACATATGT
1 ATATTCTTTCATAA-ATATGT
17668 CATTGACATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.33, C:0.10, G:0.05, T:0.53
Consensus pattern (20 bp):
ATATTCTTTCATAAATATGT
Found at i:19170 original size:14 final size:15
Alignment explanation
Indices: 19151--19179 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
19141 AAATTTTTTT
19151 ATTTTTA-TTGGTTC
1 ATTTTTATTTGGTTC
19165 ATTTTTATTTGGTTC
1 ATTTTTATTTGGTTC
19180 TATGAATTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.14, C:0.07, G:0.14, T:0.66
Consensus pattern (15 bp):
ATTTTTATTTGGTTC
Found at i:22525 original size:24 final size:24
Alignment explanation
Indices: 22491--22538 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
22481 ATGAATGTTC
*
22491 AACCTTTCATCTCCCTTAACCTTT
1 AACCTTCCATCTCCCTTAACCTTT
* *
22515 AACCTTCCATCTTCTTTAACCTTT
1 AACCTTCCATCTCCCTTAACCTTT
22539 CATTATTCTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.21, C:0.35, G:0.00, T:0.44
Consensus pattern (24 bp):
AACCTTCCATCTCCCTTAACCTTT
Found at i:34440 original size:93 final size:93
Alignment explanation
Indices: 34281--34468 Score: 340
Period size: 93 Copynumber: 2.0 Consensus size: 93
34271 GAATAGACCA
34281 ATAAGAGATTTTGTTGCGCCTTTACTCGATGATCTGCAACCAGGGGTTGTGAAACCAGCAATTCA
1 ATAAGAGATTTTGTTGCGCCTTTACTCGATGATCTGCAACCAGGGGTTGTGAAACCAGCAATTCA
*
34346 GGCTGGTAAATTTGAATTGAAACCGGTG
66 GGCTGGTAAATTTGAATTGAAACCAGTG
* *
34374 ATAAGAGATTTTGTTGTGCCTTTACTCGATGATCTGCAACCAGGGGTTGTGAGACCAGCAATTCA
1 ATAAGAGATTTTGTTGCGCCTTTACTCGATGATCTGCAACCAGGGGTTGTGAAACCAGCAATTCA
*
34439 GGCTGGTAACTTTGAATTGAAACCAGTG
66 GGCTGGTAAATTTGAATTGAAACCAGTG
34467 AT
1 AT
34469 GTTTCAGATG
Statistics
Matches: 91, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 91 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.30
Consensus pattern (93 bp):
ATAAGAGATTTTGTTGCGCCTTTACTCGATGATCTGCAACCAGGGGTTGTGAAACCAGCAATTCA
GGCTGGTAAATTTGAATTGAAACCAGTG
Found at i:39756 original size:14 final size:15
Alignment explanation
Indices: 39737--39767 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
39727 ATGCATTTCT
39737 TTATTT-ACTTTCAG
1 TTATTTCACTTTCAG
39751 TTATTTCACTTTCAG
1 TTATTTCACTTTCAG
39766 TT
1 TT
39768 GTTTTATTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.19, C:0.16, G:0.06, T:0.58
Consensus pattern (15 bp):
TTATTTCACTTTCAG
Found at i:41444 original size:35 final size:35
Alignment explanation
Indices: 41398--41502 Score: 210
Period size: 35 Copynumber: 3.0 Consensus size: 35
41388 GATGACAACA
41398 ACGAAAGGCATTCAAACTCTAAGGAGGATTGTTAT
1 ACGAAAGGCATTCAAACTCTAAGGAGGATTGTTAT
41433 ACGAAAGGCATTCAAACTCTAAGGAGGATTGTTAT
1 ACGAAAGGCATTCAAACTCTAAGGAGGATTGTTAT
41468 ACGAAAGGCATTCAAACTCTAAGGAGGATTGTTAT
1 ACGAAAGGCATTCAAACTCTAAGGAGGATTGTTAT
41503 CGCAATATAG
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 70 1.00
ACGTcount: A:0.37, C:0.14, G:0.23, T:0.26
Consensus pattern (35 bp):
ACGAAAGGCATTCAAACTCTAAGGAGGATTGTTAT
Found at i:42141 original size:17 final size:18
Alignment explanation
Indices: 42119--42158 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
42109 TAAGTTTTAA
42119 TGCATTTT-TATTATCAC
1 TGCATTTTATATTATCAC
* *
42136 TGCATTTTATTTTGTCAC
1 TGCATTTTATATTATCAC
42154 TGCAT
1 TGCAT
42159 CATTTTGTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.20, C:0.17, G:0.10, T:0.53
Consensus pattern (18 bp):
TGCATTTTATATTATCAC
Found at i:45300 original size:32 final size:32
Alignment explanation
Indices: 45203--45303 Score: 98
Period size: 32 Copynumber: 3.2 Consensus size: 32
45193 ATTTTTTTTA
45203 AAAAAAAAATTCATTTTGCTTCATTCTTCCTT
1 AAAAAAAAATTCATTTTGCTTCATTCTTCCTT
*** * ** * **
45235 AAAAAATCTTTTATTNAAG-TTAATT-TTTTTT
1 AAAAAAAAATTCATT-TTGCTTCATTCTTCCTT
45266 AAAAAAAAATTCATTTTGCTTCATTCTTCCTT
1 AAAAAAAAATTCATTTTGCTTCATTCTTCCTT
45298 AAAAAA
1 AAAAAA
45304 TCTTTTATTT
Statistics
Matches: 48, Mismatches: 18, Indels: 6
0.67 0.25 0.08
Matches are distributed among these distances:
30 1 0.02
31 20 0.42
32 26 0.54
33 1 0.02
ACGTcount: A:0.39, C:0.13, G:0.03, T:0.45
Consensus pattern (32 bp):
AAAAAAAAATTCATTTTGCTTCATTCTTCCTT
Found at i:45303 original size:64 final size:64
Alignment explanation
Indices: 45182--45313 Score: 248
Period size: 63 Copynumber: 2.1 Consensus size: 64
45172 TCCATTTCGG
45182 TATTTAAGTTAATTTTTTTTAAAAAAAAAATTCATTTTGCTTCATTCTTCCTTAAAAAATCTTT
1 TATTTAAGTTAATTTTTTTTAAAAAAAAAATTCATTTTGCTTCATTCTTCCTTAAAAAATCTTT
*
45246 TATTNAAGTTAATTTTTTTT-AAAAAAAAATTCATTTTGCTTCATTCTTCCTTAAAAAATCTTT
1 TATTTAAGTTAATTTTTTTTAAAAAAAAAATTCATTTTGCTTCATTCTTCCTTAAAAAATCTTT
45309 TATTT
1 TATTT
45314 GCTTTTTTTT
Statistics
Matches: 66, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
63 47 0.71
64 19 0.29
ACGTcount: A:0.35, C:0.11, G:0.03, T:0.51
Consensus pattern (64 bp):
TATTTAAGTTAATTTTTTTTAAAAAAAAAATTCATTTTGCTTCATTCTTCCTTAAAAAATCTTT
Found at i:45315 original size:31 final size:31
Alignment explanation
Indices: 45217--45317 Score: 89
Period size: 31 Copynumber: 3.2 Consensus size: 31
45207 AAAAATTCAT
45217 TTTGCTTCATTCTTCCTTAAAAAATCTTTTA
1 TTTGCTTCATTCTTCCTTAAAAAATCTTTTA
* * ** *** *
45248 TTNAAG-TTAATT-TTTTTTAAAAAAAAATTCA
1 TT--TGCTTCATTCTTCCTTAAAAAATCTTTTA
45279 TTTTGCTTCATTCTTCCTTAAAAAATCTTTTA
1 -TTTGCTTCATTCTTCCTTAAAAAATCTTTTA
45311 TTTGCTT
1 TTTGCTT
45318 TTTTTTTCTC
Statistics
Matches: 49, Mismatches: 16, Indels: 10
0.65 0.21 0.13
Matches are distributed among these distances:
30 1 0.02
31 27 0.55
32 20 0.41
33 1 0.02
ACGTcount: A:0.30, C:0.14, G:0.04, T:0.51
Consensus pattern (31 bp):
TTTGCTTCATTCTTCCTTAAAAAATCTTTTA
Found at i:46768 original size:40 final size:39
Alignment explanation
Indices: 46652--47448 Score: 596
Period size: 40 Copynumber: 20.3 Consensus size: 39
46642 CCTCTGATTA
* * *
46652 GGGTAAGAGATTTG-GT-TCTTCAATCTGGCCTATGATCA
1 GGGTAAGAGATTGGTGTGTCTTCAATCT-GCCCATGATCG
46690 GGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCATGATCG
1 GGGTAAGAGATTGG-TG-TGTCTTCAATCTG-CCCATGATCG
* *
46732 GGGTAAGAGATTGGTGTGCCTTCAATTTGCCTCATGATCG
1 GGGTAAGAGATTGGTGTGTCTTCAATCTGCC-CATGATCG
* *
46772 GGGT-A-AGATTAGTGTGTCTTCAATCTGCCC-TCCGA-CTA
1 GGGTAAGAGATTGGTGTGTCTTCAATCTGCCCAT--GATC-G
* ** *
46810 GGGTAAAAGATTGG-ACG-CTTCAATCTGCCCCATGATCA
1 GGGTAAGAGATTGGTGTGTCTTCAATCTG-CCCATGATCG
* * **
46848 AGGTAAGAGATTGGTGTGTCTTCAATCTGCCCTTTGATTA
1 GGGTAAGAGATTGGTGTGTCTTCAATCTGCCC-ATGATCG
* * *
46888 GGGTAAGAGCTTGG-AT-TCTTCAATCTGCCCTATGATTG
1 GGGTAAGAGATTGGTGTGTCTTCAATCTGCCC-ATGATCG
* * * * *
46926 GGGTAAGAAATTTGATTTAT-TTAAATCTGCCCCATGATCG
1 GGGTAAGAGA-TTGGTGTGTCTTCAATCTG-CCCATGATCG
* * *
46966 GGGTAAAAGATTGGTGTGCCTTCAATTTGCCCCATGATCG
1 GGGTAAGAGATTGGTGTGTCTTCAATCTG-CCCATGATCG
* *
47006 GGGTAAGAGATTGGTGTGTCTTCAATCTGCCCTCTGA-CTA
1 GGGTAAGAGATTGGTGTGTCTTCAATCTGCCC-ATGATC-G
* * * *
47046 AGGTAAAAGATTGG-ATG-CTTCAATCTGCCCTAGGATCG
1 GGGTAAGAGATTGGTGTGTCTTCAATCTGCCC-ATGATCG
* * * * * **
47084 GGGTAAGAAATT-GTATGTCTTCAATTTTCCCTTTGATTA
1 GGGTAAGAGATTGGTGTGTCTTCAATCTGCCC-ATGATCG
* * *
47123 GGGTAAAAGATTGG-ATG-CTTCAATCTGCCCTATGATCA
1 GGGTAAGAGATTGGTGTGTCTTCAATCTGCCC-ATGATCG
* **
47161 GGGTAAGAGATTGGTGTGTCTTCAATCTGCCCTTTGATTA
1 GGGTAAGAGATTGGTGTGTCTTCAATCTGCCC-ATGATCG
* * * *
47201 AGGTAAGAAATTGG-ATG-CTACAATCTGCCCTATGATCG
1 GGGTAAGAGATTGGTGTGTCTTCAATCTGCCC-ATGATCG
47239 GGGTAAGAGATTGGAT-TGTCTTCAATCTGCCCTATGATCG
1 GGGTAAGAGATTGG-TGTGTCTTCAATCTGCCC-ATGATCG
* * *
47279 GGGTAAGAGATTGGATGATATCTTTAATTTGCCTCATGATCG
1 GGGTAAGAGATTGG-TG-TGTCTTCAATCTGCC-CATGATCG
* *
47321 AGGTAAGAGATTGGTGTGCCTTCAATCTGCCCTATGATCG
1 GGGTAAGAGATTGGTGTGTCTTCAATCTGCCC-ATGATCG
* * * * * *
47361 GGGTATGTGATTAGTGTGTCTTCAATTTGCCCTCTGA-CTA
1 GGGTAAGAGATTGGTGTGTCTTCAATCTGCCC-ATGATC-G
* * *
47401 GGGTAAAAGATTGG-ATG-CTTCAATTTGCCTCATGATCG
1 GGGTAAGAGATTGGTGTGTCTTCAATCTGCC-CATGATCG
47439 GGGTAAGAGA
1 GGGTAAGAGA
47449 ATGAATTCTT
Statistics
Matches: 618, Mismatches: 101, Indels: 80
0.77 0.13 0.10
Matches are distributed among these distances:
36 1 0.00
37 3 0.00
38 204 0.33
39 69 0.11
40 266 0.43
41 10 0.02
42 64 0.10
43 1 0.00
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.32
Consensus pattern (39 bp):
GGGTAAGAGATTGGTGTGTCTTCAATCTGCCCATGATCG
Found at i:46814 original size:78 final size:78
Alignment explanation
Indices: 46609--47358 Score: 700
Period size: 78 Copynumber: 9.5 Consensus size: 78
46599 TTATCTTTAA
* * *
46609 GGGTAAAAGATTTGGATGATGTCTTCAATTTTCCCTCTGATTAGGGTAAGAGATTTGGT-T-CTT
1 GGGTAAGAGA-TTGG-TG-TGTCTTCAATCTGCCCTCTGATTAGGGTAAGAGA-TTGGTATGCTT
* *
46672 CAATCTGGCCTATGATCA
62 CAATCT-GCCCATGATCG
** *
46690 GGGTAAGAGATTGGATGATGTCTTCAATCTGCCC-CATGATCGGGGTAAGAGATTGGTGTGCCTT
1 GGGTAAGAGATTGG-TG-TGTCTTCAATCTGCCCTC-TGATTAGGGTAAGAGATTGGTATG-CTT
*
46754 CAATTTGCCTCATGATCG
62 CAATCTGCC-CATGATCG
* * * * *
46772 GGGT-A-AGATTAGTGTGTCTTCAATCTGCCCTCCGACTAGGGTAAAAGATTGG-ACGCTTCAAT
1 GGGTAAGAGATTGGTGTGTCTTCAATCTGCCCTCTGATTAGGGTAAGAGATTGGTATGCTTCAAT
*
46834 CTGCCCCATGATCA
66 CTG-CCCATGATCG
* * * *
46848 AGGTAAGAGATTGGTGTGTCTTCAATCTGCCCTTTGATTAGGGTAAGAGCTTGG-ATTCTTCAAT
1 GGGTAAGAGATTGGTGTGTCTTCAATCTGCCCTCTGATTAGGGTAAGAGATTGGTATGCTTCAAT
*
46912 CTGCCCTATGATTG
66 CTGCCC-ATGATCG
* * * * * ** * *
46926 GGGTAAGAAATTTGATTTAT-TTAAATCTGCCC-CATGATCGGGGTAAAAGATTGGTGTGCCTTC
1 GGGTAAGAGA-TTGGTGTGTCTTCAATCTGCCCTC-TGATTAGGGTAAGAGATTGGTATG-CTTC
*
46989 AATTTGCCCCATGATCG
63 AATCTG-CCCATGATCG
* * *
47006 GGGTAAGAGATTGGTGTGTCTTCAATCTGCCCTCTGACTAAGGTAAAAGATTGG-ATGCTTCAAT
1 GGGTAAGAGATTGGTGTGTCTTCAATCTGCCCTCTGATTAGGGTAAGAGATTGGTATGCTTCAAT
*
47070 CTGCCCTAGGATCG
66 CTGCCC-ATGATCG
* * * * * *
47084 GGGTAAGAAATT-GTATGTCTTCAATTTTCCCTTTGATTAGGGTAAAAGATTGG-ATGCTTCAAT
1 GGGTAAGAGATTGGTGTGTCTTCAATCTGCCCTCTGATTAGGGTAAGAGATTGGTATGCTTCAAT
*
47147 CTGCCCTATGATCA
66 CTGCCC-ATGATCG
* * * *
47161 GGGTAAGAGATTGGTGTGTCTTCAATCTGCCCTTTGATTAAGGTAAGAAATTGG-ATGCTACAAT
1 GGGTAAGAGATTGGTGTGTCTTCAATCTGCCCTCTGATTAGGGTAAGAGATTGGTATGCTTCAAT
47225 CTGCCCTATGATCG
66 CTGCCC-ATGATCG
* ** *
47239 GGGTAAGAGATTGGAT-TGTCTTCAATCTGCCCTATGATCGGGGTAAGAGATTGGATGATATCTT
1 GGGTAAGAGATTGG-TGTGTCTTCAATCTGCCCTCTGATTAGGGTAAGAGATTGG-T-AT-GCTT
* *
47303 TAATTTGCCTCATGATCG
62 CAATCTGCC-CATGATCG
* * *
47321 AGGTAAGAGATTGGTGTGCCTTCAATCTGCCCTATGAT
1 GGGTAAGAGATTGGTGTGTCTTCAATCTGCCCTCTGAT
47359 CGGGGTATGT
Statistics
Matches: 558, Mismatches: 85, Indels: 51
0.80 0.12 0.07
Matches are distributed among these distances:
76 19 0.03
77 78 0.14
78 253 0.45
79 25 0.04
80 94 0.17
81 20 0.04
82 68 0.12
83 1 0.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (78 bp):
GGGTAAGAGATTGGTGTGTCTTCAATCTGCCCTCTGATTAGGGTAAGAGATTGGTATGCTTCAAT
CTGCCCATGATCG
Found at i:61550 original size:13 final size:14
Alignment explanation
Indices: 61531--61566 Score: 56
Period size: 13 Copynumber: 2.6 Consensus size: 14
61521 TATTTGGGTT
61531 TAATTTGGATTTTG
1 TAATTTGGATTTTG
*
61545 -AATTTGTATTTTG
1 TAATTTGGATTTTG
61558 TAATTTGGA
1 TAATTTGGA
61567 CATTTAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
13 12 0.63
14 7 0.37
ACGTcount: A:0.25, C:0.00, G:0.19, T:0.56
Consensus pattern (14 bp):
TAATTTGGATTTTG
Found at i:63035 original size:28 final size:28
Alignment explanation
Indices: 62995--63051 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
62985 TCAAATGGAA
62995 AGGATTGGAGCGGATCACTGATTTTACT
1 AGGATTGGAGCGGATCACTGATTTTACT
63023 AGGATTGGAGCGGATCACTGATTTTACT
1 AGGATTGGAGCGGATCACTGATTTTACT
63051 A
1 A
63052 AGTTACAACA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.32
Consensus pattern (28 bp):
AGGATTGGAGCGGATCACTGATTTTACT
Found at i:69142 original size:21 final size:21
Alignment explanation
Indices: 69117--69159 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
69107 TTTCTCTCTG
69117 TCTCTTGTGATTATAAATTTC
1 TCTCTTGTGATTATAAATTTC
69138 TCTCTTGTGATTATAAATTTC
1 TCTCTTGTGATTATAAATTTC
69159 T
1 T
69160 TCCATTTTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.23, C:0.14, G:0.09, T:0.53
Consensus pattern (21 bp):
TCTCTTGTGATTATAAATTTC
Found at i:71125 original size:25 final size:25
Alignment explanation
Indices: 71097--71205 Score: 101
Period size: 25 Copynumber: 4.3 Consensus size: 25
71087 TCCAATGAGC
*
71097 CTAGACAGAATATCGCTCATACGTG
1 CTAGACAGAATATCGCTCATACGAG
* *
71122 CTAGACAGAATATCACTTATACGAG
1 CTAGACAGAATATCGCTCATACGAG
* * * *
71147 CCAGACAAAATATCGCTCTTACGAA
1 CTAGACAGAATATCGCTCATACGAG
* * *
71172 CTATAATCAGAATTTCGCTCTTACGAG
1 CTA-GA-CAGAATATCGCTCATACGAG
*
71199 CCAGACA
1 CTAGACA
71206 AAAATACGTT
Statistics
Matches: 66, Mismatches: 16, Indels: 4
0.77 0.19 0.05
Matches are distributed among these distances:
25 45 0.68
26 2 0.03
27 19 0.29
ACGTcount: A:0.36, C:0.25, G:0.16, T:0.24
Consensus pattern (25 bp):
CTAGACAGAATATCGCTCATACGAG
Found at i:72351 original size:17 final size:17
Alignment explanation
Indices: 72329--72368 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
72319 GAGCTATTAA
* *
72329 ACACACGGTCGTGTGCC
1 ACACACGGTCATATGCC
72346 ACACACGGTCATATGCC
1 ACACACGGTCATATGCC
72363 ACACAC
1 ACACAC
72369 AATCGCATGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.28, C:0.38, G:0.20, T:0.15
Consensus pattern (17 bp):
ACACACGGTCATATGCC
Found at i:75057 original size:81 final size:81
Alignment explanation
Indices: 74897--75107 Score: 248
Period size: 81 Copynumber: 2.6 Consensus size: 81
74887 TTCGATAACC
** *
74897 AAGATCCTGCATATGTTTTGGATTCTTGACAGCTTGTGTGAGTAGCATCATGAGTGGATAAATAT
1 AAGATCCTGCATATGTTACGGATTCTTGACAGCTTGTGTGAGCAGCATCATGAGTGGATAAATAT
74962 GGATCCTCCAATGGCT
66 GGATCCTCCAATGGCT
* * *
74978 AAGATCCTGCTTATGTTACGGATTCTTGATAGTTTGTGTGAGCAGCATCATGAGTGGATAAA-AT
1 AAGATCCTGCATATGTTACGGATTCTTGACAGCTTGTGTGAGCAGCATCATGAGTGGATAAATAT
* * * *
75042 GGTTCGTATCGATGGCT
66 GGATCCT-CCAATGGCT
** **
75059 AA-AGTCC-GTCATATGTTATAGATTCTAAACAGCTTGTGTGAGCAGCATC
1 AAGA-TCCTG-CATATGTTACGGATTCTTGACAGCTTGTGTGAGCAGCATC
75108 GTATACTGGT
Statistics
Matches: 110, Mismatches: 17, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
80 9 0.08
81 101 0.92
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.33
Consensus pattern (81 bp):
AAGATCCTGCATATGTTACGGATTCTTGACAGCTTGTGTGAGCAGCATCATGAGTGGATAAATAT
GGATCCTCCAATGGCT
Found at i:76956 original size:55 final size:55
Alignment explanation
Indices: 76889--76999 Score: 213
Period size: 55 Copynumber: 2.0 Consensus size: 55
76879 ATTTATAATC
76889 ACAAGAAATAGAGAGAAAATAGATTCAGAGAATTCAGTAAGAAGGCCCCTTCCAA
1 ACAAGAAATAGAGAGAAAATAGATTCAGAGAATTCAGTAAGAAGGCCCCTTCCAA
*
76944 ACAAGAAGTAGAGAGAAAATAGATTCAGAGAATTCAGTAAGAAGGCCCCTTCCAA
1 ACAAGAAATAGAGAGAAAATAGATTCAGAGAATTCAGTAAGAAGGCCCCTTCCAA
76999 A
1 A
77000 GTTTTCTCCT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.47, C:0.16, G:0.21, T:0.16
Consensus pattern (55 bp):
ACAAGAAATAGAGAGAAAATAGATTCAGAGAATTCAGTAAGAAGGCCCCTTCCAA
Found at i:81215 original size:29 final size:30
Alignment explanation
Indices: 81161--81302 Score: 164
Period size: 30 Copynumber: 4.8 Consensus size: 30
81151 AAATTTGATT
*
81161 TTTTTGGGAAGTTT-AGGGATTAAATCTAAA
1 TTTTTGGAAAGTTTGAGGG-TTAAATCTAAA
* * *
81191 TTTTTGAAAAGTTT-AGGGTCAAATCCAAA
1 TTTTTGGAAAGTTTGAGGGTTAAATCTAAA
* *
81220 TTTTTGGAAAGTTTGAGGGTTAAATTTGAA
1 TTTTTGGAAAGTTTGAGGGTTAAATCTAAA
* * *
81250 TTTTTGGGAAGTTTGGGGGTTTAATCTAAA
1 TTTTTGGAAAGTTTGAGGGTTAAATCTAAA
*
81280 TTTTTGGATAGTTTG-GGGTTAAA
1 TTTTTGGAAAGTTTGAGGGTTAAA
81303 ACATAATTTC
Statistics
Matches: 94, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
29 29 0.31
30 65 0.69
ACGTcount: A:0.30, C:0.04, G:0.25, T:0.42
Consensus pattern (30 bp):
TTTTTGGAAAGTTTGAGGGTTAAATCTAAA
Found at i:81262 original size:59 final size:60
Alignment explanation
Indices: 81161--81302 Score: 164
Period size: 59 Copynumber: 2.4 Consensus size: 60
81151 AAATTTGATT
*
81161 TTTTTGGGAAGTTT-AGGGATTAAATCTAAATTTTTGAAAAGTTT-AGGGTCAAATCCAAA
1 TTTTTGGAAAGTTTGAGGG-TTAAATCTAAATTTTTGAAAAGTTTGAGGGTCAAATCCAAA
* * ** * ** *
81220 TTTTTGGAAAGTTTGAGGGTTAAATTTGAATTTTTGGGAAGTTTGGGGGTTTAATCTAAA
1 TTTTTGGAAAGTTTGAGGGTTAAATCTAAATTTTTGAAAAGTTTGAGGGTCAAATCCAAA
*
81280 TTTTTGGATAGTTTG-GGGTTAAA
1 TTTTTGGAAAGTTTGAGGGTTAAA
81303 ACATAATTTC
Statistics
Matches: 71, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
59 42 0.59
60 29 0.41
ACGTcount: A:0.30, C:0.04, G:0.25, T:0.42
Consensus pattern (60 bp):
TTTTTGGAAAGTTTGAGGGTTAAATCTAAATTTTTGAAAAGTTTGAGGGTCAAATCCAAA
Found at i:81311 original size:89 final size:89
Alignment explanation
Indices: 81132--81311 Score: 220
Period size: 89 Copynumber: 2.0 Consensus size: 89
81122 CAAAATGAAA
*
81132 TTTTAGAAAGTTTGGGGCCAAATTTGATTTTTTTGGGAAGTTTAGGGATTAAATCTAAATTTTTG
1 TTTTAGAAAGTTTGGGGCCAAATTTGATATTTTTGGGAAGTTTAGGGATTAAATCTAAATTTTTG
*
81197 AAAAGTTTAGGGTCAAATCCAAAT
66 AAAAGTTTAGGGTCAAATACAAAT
* ** * * *
81221 TTTTGGAAAGTTTGAGGGTTAAATTTGA-ATTTTTGGGAAGTTTGGGGGTTTAATCTAAATTTTT
1 TTTTAGAAAGTTTG-GGGCCAAATTTGATATTTTTGGGAAGTTTAGGGATTAAATCTAAATTTTT
* * * *
81285 GGATAGTTTGGGGTTAAA-ACATAAT
65 GAAAAGTTTAGGGTCAAATACA-AAT
81310 TT
1 TT
81312 CTAAATAAAA
Statistics
Matches: 77, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
88 2 0.03
89 64 0.83
90 11 0.14
ACGTcount: A:0.30, C:0.04, G:0.24, T:0.42
Consensus pattern (89 bp):
TTTTAGAAAGTTTGGGGCCAAATTTGATATTTTTGGGAAGTTTAGGGATTAAATCTAAATTTTTG
AAAAGTTTAGGGTCAAATACAAAT
Found at i:83318 original size:124 final size:122
Alignment explanation
Indices: 82946--83384 Score: 464
Period size: 124 Copynumber: 3.6 Consensus size: 122
82936 ATCTTAGTCC
* * * * * * *
82946 ACTTCTCTGTATCTTATCAGGAAGATGACCACTTCATTGTTTTGACCCATTTCTCTGTATCTCAT
1 ACTTCTCTGTATCTCATCAAGAAGATGACCGCTTCATTGATTTAATCCACTTCTCTGTATCTCAT
** * ** * *
83011 CAGGAAGATGGGGTTTG-A--TTACTCTTATGGAGCTCCGCTTCATTGTTTTGGTCC
66 CAGGAAGATGGGGTTTGAAGTTTACTCACATTGAGCTTAGCTTCATTGATTTGGTCT
* * * ** * * * *
83065 ACTTCTGTATATCTCATCAGGAAGATGATTGCTTCTTTG-TCT-GTCCTACTTCTTTGTATCTCA
1 ACTTCTCTGTATCTCATCAAGAAGATGACCGCTTCATTGATTTAATCC-ACTTCTCTGTATCTCA
* * * *
83128 TCA--AGGATGGGGTTTGAAGTTTCACTCACATTTGGGCTTCACCTT-ATT-ATTTTGGTTT
65 TCAGGAAGATGGGGTTTGAAGTTT-ACTCACA-TTGAGCTT-AGCTTCATTGA-TTTGGTCT
* *
83186 ACTTCTCTGTATCTCATCAAGAAGATGTCCGCTTCATTGATTTAATTCACTTCTCTGTATCTCAT
1 ACTTCTCTGTATCTCATCAAGAAGATGACCGCTTCATTGATTTAATCCACTTCTCTGTATCTCAT
* * *
83251 TAGGAAGATGGGGGTTTGAAGTTTAACTCACATTAAGCTTTGCTTCATTGATTTGGTCT
66 CAGGAAGAT-GGGGTTTGAAGTTT-ACTCACATTGAGCTTAGCTTCATTGATTTGGTCT
83310 ACTTCTCTGTATCTCATCAAGAAGATGACCGCTTCATTGATTTAATCCACTTCTCTGTATCTCAT
1 ACTTCTCTGTATCTCATCAAGAAGATGACCGCTTCATTGATTTAATCCACTTCTCTGTATCTCAT
83375 CAGGAAGATG
66 CAGGAAGATG
83385 ATCGCTTTAT
Statistics
Matches: 260, Mismatches: 45, Indels: 26
0.79 0.14 0.08
Matches are distributed among these distances:
116 12 0.05
117 3 0.01
118 19 0.07
119 34 0.13
120 5 0.02
121 46 0.18
122 22 0.08
123 6 0.02
124 91 0.35
125 22 0.08
ACGTcount: A:0.22, C:0.21, G:0.18, T:0.40
Consensus pattern (122 bp):
ACTTCTCTGTATCTCATCAAGAAGATGACCGCTTCATTGATTTAATCCACTTCTCTGTATCTCAT
CAGGAAGATGGGGTTTGAAGTTTACTCACATTGAGCTTAGCTTCATTGATTTGGTCT
Found at i:83363 original size:48 final size:48
Alignment explanation
Indices: 83292--83431 Score: 199
Period size: 48 Copynumber: 2.9 Consensus size: 48
83282 ATTAAGCTTT
* *
83292 GCTTCATTGATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGACC
1 GCTTCATTGATTTGATCCACTTCTCTGTATCTCATCAAGAAGATGACC
* * *
83340 GCTTCATTGATTTAATCCACTTCTCTGTATCTCATCAGGAAGATGATC
1 GCTTCATTGATTTGATCCACTTCTCTGTATCTCATCAAGAAGATGACC
* * * *
83388 GCTTTATTGCTTTGACCCACTTCTCTATATCTCATCAAGAAGAT
1 GCTTCATTGATTTGATCCACTTCTCTGTATCTCATCAAGAAGAT
83432 AGGGGTTTGA
Statistics
Matches: 81, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 81 1.00
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.38
Consensus pattern (48 bp):
GCTTCATTGATTTGATCCACTTCTCTGTATCTCATCAAGAAGATGACC
Found at i:83411 original size:172 final size:172
Alignment explanation
Indices: 83186--83547 Score: 555
Period size: 172 Copynumber: 2.1 Consensus size: 172
83176 ATTTTGGTTT
** *
83186 ACTTCTCTGTATCTCATCAAGAAGATGTCCGCTTCATTGATTTAATTCACTTCTCTGTATCTCAT
1 ACTTCTCTGTATCTCATCAAGAAGATGTCCGCTTCATTGATTTAACCCACTTCTCTATATCTCAT
* * * * *
83251 TAGGAAGATGGGGGTTTGAAGTTTAACTCACATTAAGCTTTGCTTCATTGATTTGGTCTACTTCT
66 CAAGAAGATAGGGGTTTGAAGTTTAACTCACATTAAGCCTTACTTCATTGATTTGGTCTACTTCT
83316 CTGTATCTCATCAAGAAGATGACCGCTTCATTGATTTAATCC
131 CTGTATCTCATCAAGAAGATGACCGCTTCATTGATTTAATCC
* * * *
83358 ACTTCTCTGTATCTCATCAGGAAGATGAT-CGCTTTATTGCTTTGACCCACTTCTCTATATCTCA
1 ACTTCTCTGTATCTCATCAAGAAGATG-TCCGCTTCATTGATTTAACCCACTTCTCTATATCTCA
* * * *
83422 TCAAGAAGATAGGGGTTTGAAGTTTCACTCACATTGATCCTTACTTTATTGATTTGGTCTACTTC
65 TCAAGAAGATAGGGGTTTGAAGTTTAACTCACATTAAGCCTTACTTCATTGATTTGGTCTACTTC
*
83487 TCTGTATCTCATCAGGAAGATGACCGCTTCATTGATTTAATCC
130 TCTGTATCTCATCAAGAAGATGACCGCTTCATTGATTTAATCC
83530 ACTTCTCTGTATCTCATC
1 ACTTCTCTGTATCTCATC
83548 GAAAAGACAG
Statistics
Matches: 172, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
172 171 0.99
173 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.15, T:0.39
Consensus pattern (172 bp):
ACTTCTCTGTATCTCATCAAGAAGATGTCCGCTTCATTGATTTAACCCACTTCTCTATATCTCAT
CAAGAAGATAGGGGTTTGAAGTTTAACTCACATTAAGCCTTACTTCATTGATTTGGTCTACTTCT
CTGTATCTCATCAAGAAGATGACCGCTTCATTGATTTAATCC
Found at i:83617 original size:85 final size:85
Alignment explanation
Indices: 83472--83632 Score: 241
Period size: 85 Copynumber: 1.9 Consensus size: 85
83462 TTACTTTATT
* * *
83472 GATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTGATTTAATCCACTTCTC
1 GATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTGATTTAACCCACTTCTA
83537 TGTATCTCATCGAAAAGACA
66 TGTATCTCATCGAAAAGACA
** * * * *
83557 GATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGATTGTTTTATTGCTTTGACCCACTTCTA
1 GATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTGATTTAACCCACTTCTA
83622 TGTATCTCATC
66 TGTATCTCATC
83633 AGGAAGATGG
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
85 67 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.39
Consensus pattern (85 bp):
GATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTGATTTAACCCACTTCTA
TGTATCTCATCGAAAAGACA
Found at i:83715 original size:209 final size:209
Alignment explanation
Indices: 83355--84479 Score: 1585
Period size: 209 Copynumber: 5.4 Consensus size: 209
83345 ATTGATTTAA
* *
83355 TCCACTTCTCTGTATCTCATCAGGAAGATGATCGCTTTATTGCTTTGACCCACTTCTCTATATCT
1 TCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTGCTTTGACCCACTTCTCTGTATCT
* * * * * *
83420 CATCAAGAAGATAGGGG-TTTGAAGTTTCACTCACATTGATCCTTACTTTATTGATTTGGTCTAC
66 CATCAGGAAGAT-GGGGATTTGAAGTTTCACTCACATTGAGCTTTGCTTCATTGATTTGATCTAC
*
83484 TTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTGATTTAATCCACTTCTCTGTATCTCATC-
130 TTCTCTGTATCTCATTAGGAAGATGACCGCTTCATTGATTTAATCCACTTCTCTGTATCTCATCA
* *
83548 GAAAAGACAGATTTGG
195 G-GAAGGCAGATTTGG
** * *
83564 TCCACTTCTCTGTATCTCATCAGGAAGATGATTGTTTTATTGCTTTGACCCACTTCTATGTATCT
1 TCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTGCTTTGACCCACTTCTCTGTATCT
* *
83629 CATCAGGAAGATGGGGATTTGAAGTTTCACTCAAATTGAGCTTTG-TGTCATTTATTTGATCTAC
66 CATCAGGAAGATGGGGATTTGAAGTTTCACTCACATTGAGCTTTGCT-TCATTGATTTGATCTAC
* *
83693 TTCTCTGTATCTCATTAGGAAGATGACCGCTTCATTGATTTAATACACTTCTTTGTATCTCATCA
130 TTCTCTGTATCTCATTAGGAAGATGACCGCTTCATTGATTTAATCCACTTCTCTGTATCTCATCA
*
83758 GGAAGGCAAATTTGG
195 GGAAGGCAGATTTGG
* * * * **
83773 TCCACTTCTTTGTATCTCATCAAGAAGATGACCGCTTTATTACATTGACTGACTTCTCTGTATCT
1 TCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTGCTTTGACCCACTTCTCTGTATCT
* * * * * *
83838 CATCAGGAAGAT-GGAAGTTTTAACTTTCACTCACATTAAGCTTTGCTTCATTGATTTGGTTTAC
66 CATCAGGAAGATGGGGA-TTTGAAGTTTCACTCACATTGAGCTTTGCTTCATTGATTTGATCTAC
* * *
83902 TTCTCTGTATCTTATCAGGAAGATGATCGCTTCATTGATTTAATCCACTTCTCTGTATCTCATCA
130 TTCTCTGTATCTCATTAGGAAGATGACCGCTTCATTGATTTAATCCACTTCTCTGTATCTCATCA
*
83967 GAAAGGCAGATTTGG
195 GGAAGGCAGATTTGG
* *
83982 TCCACTTCTTTGTATCTCATCAGGAAGATGACCGCTTTATTGCTTTGACCCACTTCTTTGTATCT
1 TCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTGCTTTGACCCACTTCTCTGTATCT
* * * *
84047 CATTAGAAAGATAGGGATTTGAAGTTTCACTCATATTGAGCTTTGCTTCATTGATTTGATCTACT
66 CATCAGGAAGATGGGGATTTGAAGTTTCACTCACATTGAGCTTTGCTTCATTGATTTGATCTACT
* * * *
84112 TCTTTGTATCTCATTAGGAAGATGGCCGCTTCACTGATTTAATCCACTTCTCTGAATCTCATCAG
131 TCTCTGTATCTCATTAGGAAGATGACCGCTTCATTGATTTAATCCACTTCTCTGTATCTCATCAG
84177 GAAGGCAGATTTGG
196 GAAGGCAGATTTGG
* * * * *
84191 TCAACTTCTCTGTATCTCATTAGGAATATGACCGCTTTATTGCTTTGACCCACTTATTTGTATCT
1 TCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTGCTTTGACCCACTTCTCTGTATCT
* * * * *
84256 TATCAGGTATATGGGGGTTTGAAGTTTCACTCACATTGAGCTTTGCTTAATTGATTTTG-TCTAC
66 CATCAGGAAGATGGGGATTTGAAGTTTCACTCACATTGAGCTTTGCTTCATTGA-TTTGATCTAC
* * * *
84320 TTCTCTGTATCTCACTAGGAAGATAACCGCTTCATTGATTTAATCCACTTCTTTGTGTCTCATCA
130 TTCTCTGTATCTCATTAGGAAGATGACCGCTTCATTGATTTAATCCACTTCTCTGTATCTCATCA
84385 GGAAGGCAGATTTGG
195 GGAAGGCAGATTTGG
* * * *
84400 TCCACTTCTCTATATCTTATCAGGAAGATGACCACTTTATTGCTTTAACCCACTTCTCTGTATCT
1 TCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTGCTTTGACCCACTTCTCTGTATCT
*
84465 CATCAGGAAGGTGGG
66 CATCAGGAAGATGGG
84480 TTTGGTCCAC
Statistics
Matches: 808, Mismatches: 101, Indels: 14
0.88 0.11 0.02
Matches are distributed among these distances:
208 8 0.01
209 791 0.98
210 9 0.01
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.38
Consensus pattern (209 bp):
TCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTGCTTTGACCCACTTCTCTGTATCT
CATCAGGAAGATGGGGATTTGAAGTTTCACTCACATTGAGCTTTGCTTCATTGATTTGATCTACT
TCTCTGTATCTCATTAGGAAGATGACCGCTTCATTGATTTAATCCACTTCTCTGTATCTCATCAG
GAAGGCAGATTTGG
Found at i:83800 original size:85 final size:85
Alignment explanation
Indices: 83682--83847 Score: 217
Period size: 85 Copynumber: 2.0 Consensus size: 85
83672 TGTGTCATTT
* * * * * *
83682 ATTTGATCTACTTCTCTGTATCTCATTAGGAAGATGACCGCTTCATT-GATTTAATACACTTCTT
1 ATTTGATCCACTTCTCTGTATCTCATCAAGAAGATGACCGCTTCATTACATTGAAT-CACTTCTC
83746 TGTATCTCATCAGGAAGGCAA
65 TGTATCTCATCAGGAAGGCAA
* * * * *
83767 ATTTGGTCCACTTCTTTGTATCTCATCAAGAAGATGACCGCTTTATTACATTGACTGACTTCTCT
1 ATTTGATCCACTTCTCTGTATCTCATCAAGAAGATGACCGCTTCATTACATTGAATCACTTCTCT
83832 GTATCTCATCAGGAAG
66 GTATCTCATCAGGAAG
83848 ATGGAAGTTT
Statistics
Matches: 69, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
85 64 0.93
86 5 0.07
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37
Consensus pattern (85 bp):
ATTTGATCCACTTCTCTGTATCTCATCAAGAAGATGACCGCTTCATTACATTGAATCACTTCTCT
GTATCTCATCAGGAAGGCAA
Found at i:84035 original size:85 final size:85
Alignment explanation
Indices: 83890--84056 Score: 235
Period size: 85 Copynumber: 2.0 Consensus size: 85
83880 TTGCTTCATT
** * * *
83890 GATTTGGTTTACTTCTCTGTATCTTATCAGGAAGATGATCGCTTCATTGATTTAATCCACTTCTC
1 GATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTGATTTAACCCACTTCTC
83955 TGTATCTCATCAGAAAGGCA
66 TGTATCTCATCAGAAAGGCA
* * * * *
83975 GATTTGGTCCACTTCTTTGTATCTCATCAGGAAGATGACCGCTTTATTGCTTTGACCCACTTCTT
1 GATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTGATTTAACCCACTTCTC
*
84040 TGTATCTCATTAGAAAG
66 TGTATCTCATCAGAAAG
84057 ATAGGGATTT
Statistics
Matches: 71, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
85 71 1.00
ACGTcount: A:0.23, C:0.21, G:0.17, T:0.39
Consensus pattern (85 bp):
GATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTGATTTAACCCACTTCTC
TGTATCTCATCAGAAAGGCA
Found at i:84261 original size:85 final size:85
Alignment explanation
Indices: 84099--84262 Score: 202
Period size: 85 Copynumber: 1.9 Consensus size: 85
84089 TTGCTTCATT
* * * * *
84099 GATTTGATCTACTTCTTTGTATCTCATTAGGAAGATGGCCGCTTCACTGATTTAATCCACTTCTC
1 GATTTGATCAACTTCTCTGTATCTCATTAGGAAGATGACCGCTTCACTGATTTAACCCACTTATC
84164 TGAATCTCATCAGGAAGGCA
66 TGAATCTCATCAGGAAGGCA
* * * * * * *
84184 GATTTGGTCAACTTCTCTGTATCTCATTAGGAATATGACCGCTTTATTGCTTTGACCCACTTATT
1 GATTTGATCAACTTCTCTGTATCTCATTAGGAAGATGACCGCTTCACTGATTTAACCCACTTATC
* *
84249 TGTATCTTATCAGG
66 TGAATCTCATCAGG
84263 TATATGGGGG
Statistics
Matches: 65, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
85 65 1.00
ACGTcount: A:0.23, C:0.21, G:0.17, T:0.38
Consensus pattern (85 bp):
GATTTGATCAACTTCTCTGTATCTCATTAGGAAGATGACCGCTTCACTGATTTAACCCACTTATC
TGAATCTCATCAGGAAGGCA
Found at i:84453 original size:85 final size:85
Alignment explanation
Indices: 84308--84559 Score: 328
Period size: 85 Copynumber: 3.0 Consensus size: 85
84298 TTGCTTAATT
* * * *
84308 GATTTTGTCTACTTCTCTGTATCTCA-CTAGGAAGATAACCGCTTCATTGATTTAATCCACTTCT
1 GATTTGGTCCACTTCTCTGTATCTCATC-AGGAAGATGACCGCTTTATTGATTTAATCCACTTCT
* *
84372 TTGTGTCTCATCAGGAAGGCA
65 CTGTATCTCATCAGGAAGGCA
* * * * *
84393 GATTTGGTCCACTTCTCTATATCTTATCAGGAAGATGACCACTTTATTGCTTTAACCCACTTCTC
1 GATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTGATTTAATCCACTTCTC
**
84458 TGTATCTCATCAGGAAGGTG
66 TGTATCTCATCAGGAAGGCA
* * *
84478 GGTTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATT-ATTTTGATTCACTTCT
1 GATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTGA-TTTAATCCACTTCT
84542 CTGTATCTCATCAGGAAG
65 CTGTATCTCATCAGGAAG
84560 ATAGGGATTT
Statistics
Matches: 144, Mismatches: 21, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
85 143 0.99
86 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.38
Consensus pattern (85 bp):
GATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTGATTTAATCCACTTCTC
TGTATCTCATCAGGAAGGCA
Found at i:84621 original size:418 final size:407
Alignment explanation
Indices: 83357--84707 Score: 1288
Period size: 418 Copynumber: 3.2 Consensus size: 407
83347 TGATTTAATC
* * *
83357 CACTTCTCTGTATCTCATCAGGAAGATGATCGCTTTATTGCTTTGACCCACTTCTCTATATCTCA
1 CACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTACTTTGACCCACTTCTCTGTATCTCA
* * * * * *
83422 TCAAGAAGATAGGGGTTTGAAGTTTCACTCACATTGATCCTTACTTTATTGATTTGGTCTACTTC
66 TCAGGAAGATGGGGGTTTGAAGTTTCACTCACATTGAGCTTTGCTTAATTGATTTGGTCTACTTC
83487 TCTGTATCTCATCAGGAAGATGACCGCTTCATTGATTTAATCCACTTCTCTGTATCTCATC-GAA
131 TCTGTATCTCATCAGGAAGATGACCGCTTCATTGATTTAATCCACTTCTCTGTATCTCATCAG-A
* ** *
83551 AAGACAGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGATTGTTTTATTGCTTTGACCCA
195 AAGGCAGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTGCTTTGACCCA
* *
83616 CTTCTATGTATCTCATCAGGAAGAT-GG---GGA-TT-TGAAGTTTCACTCA-AA-TTGAGCTTT
260 CTTCTATGTATCTCATCAGGAAGATGGGTTTGGATTTCTG-A-TCTCA-TCAGAAGATGAGCTTT
* * **
83673 GTGTCATTTATTTGATCTACTTCTCTGTATCTCATTAGGAAGATGACCGCTTCATTGATTTAATA
322 AT-TCA--T-TTTGATCTACTTCTCTGTATCTCATTAGGAAGAT-A-GGGAT--TTGATTTAATA
* * * * *
83738 CACTTCTTTGTATCTCATCAGGAAGGCAAATTTGGTC
379 -ACTTC--T-AAGCTC-TCA--TA-GCAGATTTGGTT
* * * **
83775 CACTTCTTTGTATCTCATCAAGAAGATGACCGCTTTATTACATTGACTGACTTCTCTGTATCTCA
1 CACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTACTTTGACCCACTTCTCTGTATCTCA
** * * * * *
83840 TCAGGAAGATGGAAGTTTTAACTTTCACTCACATTAAGCTTTGCTTCATTGATTTGGTTTACTTC
66 TCAGGAAGATGGGGGTTTGAAGTTTCACTCACATTGAGCTTTGCTTAATTGATTTGGTCTACTTC
* *
83905 TCTGTATCTTATCAGGAAGATGATCGCTTCATTGATTTAATCCACTTCTCTGTATCTCATCAGAA
131 TCTGTATCTCATCAGGAAGATGACCGCTTCATTGATTTAATCCACTTCTCTGTATCTCATCAGAA
*
83970 AGGCAGATTTGGTCCACTTCTTTGTATCTCATCAGGAAGATGACCGCTTTATTGCTTTGACCCAC
196 AGGCAGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTGCTTTGACCCAC
* * * * * **
84035 TTCTTTGTATCTCATTAGAAAGATAGGGATTTGAAGTTTC--A-CTCAT-ATTG-AGCTTTGCTT
261 TTCTATGTATCTCATCAGGAAGAT-GGG-TTTGGA-TTTCTGATCTCATCA--GAAGATGAGCTT
* * * * *
84095 CATTGA-TTTGATCTACTTCTTTGTATCTCATTAGGAAGAT-GGCCGCTTCACTGATTTAATCCA
321 TATTCATTTTGATCTACTTCTCTGTATCTCATTAGGAAGATAGG--GATT---TGATTTAAT-AA
* *
84158 CTTCTCTGAATCTCATCAGGAAGGCAGATTTGG-T
380 C-T-TCT-AAGCTC-TCA--TA-GCAGATTTGGTT
* * * * * *
84192 CAACTTCTCTGTATCTCATTAGGAATATGACCGCTTTATTGCTTTGACCCACTTATTTGTATCTT
1 C-ACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTACTTTGACCCACTTCTCTGTATCTC
* * *
84257 ATCAGGTATATGGGGGTTTGAAGTTTCACTCACATTGAGCTTTGCTTAATTGATTTTGTCTACTT
65 ATCAGGAAGATGGGGGTTTGAAGTTTCACTCACATTGAGCTTTGCTTAATTGATTTGGTCTACTT
* * *
84322 CTCTGTATCTCA-CTAGGAAGATAACCGCTTCATTGATTTAATCCACTTCTTTGTGTCTCATCAG
130 CTCTGTATCTCATC-AGGAAGATGACCGCTTCATTGATTTAATCCACTTCTCTGTATCTCATCAG
* * * * *
84386 GAAGGCAGATTTGGTCCACTTCTCTATATCTTATCAGGAAGATGACCACTTTATTGCTTTAACCC
194 AAAGGCAGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTGCTTTGACCC
* *
84451 ACTTCTCTGTATCTCATCAGGAAGGTGGGTTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGA
259 ACTTCTATGTATCTCATCAGGAAGATGGGTTTGG---A-TT-TCTG-ATCTCATCA-GAAGATGA
*
84516 CCGCTTTATT-ATTTTGAT-TCACTTCTCTGTATCTCATCAGGAAGATAGGGATTTGAAGTTTAA
317 --GCTTTATTCATTTTGATCT-ACTTCTCTGTATCTCATTAGGAAGATAGGGATTTG-A-TTTAA
** *
84579 CTAACTT-TAAGCT-TCATTTCATTGTTTTGGTT
377 -TAACTTCTAAGCTCTCATAGCA--GATTTGGTT
* * * * * * *
84611 CACATCTCTGTATCTTATCAGGAAGATAACTGCTTTATCATTTTGATCCACTTCTCTGTATCTCA
1 CACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTACTTTGACCCACTTCTCTGTATCTCA
* *
84676 TTAGGAAGATGGGGGTTTAAAGTTTCACTCAC
66 TCAGGAAGATGGGGGTTTGAAGTTTCACTCAC
84708 GTTAAGCTCA
Statistics
Matches: 773, Mismatches: 115, Indels: 90
0.79 0.12 0.09
Matches are distributed among these distances:
415 2 0.00
416 6 0.01
417 6 0.01
418 651 0.84
419 10 0.01
420 7 0.01
421 5 0.01
422 7 0.01
423 10 0.01
424 11 0.01
425 11 0.01
426 8 0.01
427 37 0.05
428 2 0.00
ACGTcount: A:0.24, C:0.20, G:0.17, T:0.39
Consensus pattern (407 bp):
CACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTACTTTGACCCACTTCTCTGTATCTCA
TCAGGAAGATGGGGGTTTGAAGTTTCACTCACATTGAGCTTTGCTTAATTGATTTGGTCTACTTC
TCTGTATCTCATCAGGAAGATGACCGCTTCATTGATTTAATCCACTTCTCTGTATCTCATCAGAA
AGGCAGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTGCTTTGACCCAC
TTCTATGTATCTCATCAGGAAGATGGGTTTGGATTTCTGATCTCATCAGAAGATGAGCTTTATTC
ATTTTGATCTACTTCTCTGTATCTCATTAGGAAGATAGGGATTTGATTTAATAACTTCTAAGCTC
TCATAGCAGATTTGGTT
Found at i:84625 original size:627 final size:623
Alignment explanation
Indices: 83355--84707 Score: 1620
Period size: 627 Copynumber: 2.2 Consensus size: 623
83345 ATTGATTTAA
* * *
83355 TCCACTTCTCTGTATCTCATCAGGAAGATGATCGCTTTATTGCTTTGACCCACTTCTCTATATCT
1 TCCACATCTCTGTATCTCATCAGGAAGATGACCGCTTTATTGCTTTGACCCACTTCTCTGTATCT
* * * *
83420 CATCA-AGAAGATAGGGGTTTGAAGTTTCACTCACATTGATCCTTACTTTATTGATTTGGTCTAC
66 CATTAGA-AAGATAGGGGTTTGAAGTTTCACTCACATTGAGCCTTACTTCATTGATTTGATCTAC
* *
83484 TTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTGATTTAATCCACTTCTCTGTATCTCATCG
130 TTCTCTGTATCTCATCAGGAAGATGACCGCTTCACTGATTTAATCCACTTCTCTGAATCTCATCG
* ** *
83549 AAAAGACAGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGATTGTTTTATTGCTTTGACC
195 AAAAGACAGATTTGGTCAACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTGCTTTGACC
* *
83614 CACTTCTATGTATCTCATCAGGAAGATGGGGATTTGAAGTTTCACTCAAATTGAGCTTTGTGTCA
260 CACTTATATGTATCTCATCAGGAAGATGGGGATTTGAAGTTTCACTCAAATTGAGCTTTGTGTAA
* * *
83679 TTTATTTGATCTACTTCTCTGTATCTCATTAGGAAGATGACCGCTTCATTGATTTAATACACTTC
325 TTGATTTGATCTACTTCTCTGTATCTCACTAGGAAGATAACCGCTTCATTGATTTAATACACTTC
* * *
83744 TTTGTATCTCATCAGGAAGGCAAATTTGGTCCACTTCTTTGTATCTCATCAAGAAGATGACCGCT
390 TTTGTATCTCATCAGGAAGGCAAATTTGGTCCACTTCTCTATATCTCATCAAGAAGATGACCACT
* ** *
83809 TTATTACATTGACTGACTTCTCTGTATCTCATCAGGAAGATGGAAGTTTTAACTTTCACTCACAT
455 TTATTACATTAACCCACTTCTCTGTATCTCATCAGGAAGATGG-AGTTTTAACTTTCACTCACAG
* * ** * * * *
83874 TAAGCTTTGCTTCATTGATTTGGTTTACTTCTCTGTATCTTATCAGGAAGATGATCGCTTCATTG
519 GAAGATCCGCTTCATTGATTTGATTCACTTCTCTGTATCTCATCAGGAAGATGATCGCAT-ATTG
* **
83939 ATTTAATCCACTTCTCTGTATCTCATCAGAAAGGCAGATTTGG
583 ATTTAATCAACTTCTAAGTATCTCAT-AGAAA-GCAGATTTGG
* * *
83982 TCCACTTCTTTGTATCTCATCAGGAAGATGACCGCTTTATTGCTTTGACCCACTTCTTTGTATCT
1 TCCACATCTCTGTATCTCATCAGGAAGATGACCGCTTTATTGCTTTGACCCACTTCTCTGTATCT
* * * *
84047 CATTAGAAAGATAGGGATTTGAAGTTTCACTCATATTGAGCTTTGCTTCATTGATTTGATCTACT
66 CATTAGAAAGATAGGGGTTTGAAGTTTCACTCACATTGAGCCTTACTTCATTGATTTGATCTACT
* * *
84112 TCTTTGTATCTCATTAGGAAGATGGCCGCTTCACTGATTTAATCCACTTCTCTGAATCTCATC-A
131 TCTCTGTATCTCATCAGGAAGATGACCGCTTCACTGATTTAATCCACTTCTCTGAATCTCATCGA
* * * *
84176 GGAAGGCAGATTTGGTCAACTTCTCTGTATCTCATTAGGAATATGACCGCTTTATTGCTTTGACC
196 -AAAGACAGATTTGGTCAACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTGCTTTGACC
* * * * * *
84241 CACTTATTTGTATCTTATCAGGTATATGGGGGTTTGAAGTTTCACTCACATTGAGCTTTGCT-TA
260 CACTTATATGTATCTCATCAGGAAGATGGGGATTTGAAGTTTCACTCAAATTGAGCTTTG-TGTA
*
84305 ATTGATTTTG-TCTACTTCTCTGTATCTCACTAGGAAGATAACCGCTTCATTGATTTAATCCACT
324 ATTGA-TTTGATCTACTTCTCTGTATCTCACTAGGAAGATAACCGCTTCATTGATTTAATACACT
* * * *
84369 TCTTTGTGTCTCATCAGGAAGGCAGATTTGGTCCACTTCTCTATATCTTATCAGGAAGATGACCA
388 TCTTTGTATCTCATCAGGAAGGCAAATTTGGTCCACTTCTCTATATCTCATCAAGAAGATGACCA
* * * *
84434 CTTTATTGCTTTAACCCACTTCTCTGTATCTCATCAGGAAGGTGG-GTTTGGTCCACTTCTCTGT
453 CTTTATTACATTAACCCACTTCTCTGTATCTCATCAGGAAGATGGAGTTT--T-AACTT-TC---
*
84498 ATCTCATCAGGAAGATGACCGCTTTATT-ATTTTGATTCACTTCTCTGTATCTCATCAGGAAGAT
511 A-CTCA-CAGGAAGAT--CCGCTTCATTGA-TTTGATTCACTTCTCTGTATCTCATCAGGAAGAT
* * * *** ** *
84562 -A-GGGAT-TTGAAGTTTAA-CTAACTT-TAAG-CT-TCAT-TTCA-TTGTTTTGG
571 GATCGCATATTG-A-TTTAATC-AACTTCTAAGTATCTCATAGAAAGCAGATTTGG
* * * * *** *
84609 TTCACATCTCTGTATCTTATCAGGAAGATAACTGCTTTATCATTTTGATCCACTTCTCTGTATCT
1 TCCACATCTCTGTATCTCATCAGGAAGATGACCGCTTTATTGCTTTGACCCACTTCTCTGTATCT
* * *
84674 CATTAGGAAGATGGGGGTTTAAAGTTTCACTCAC
66 CATTAGAAAGATAGGGGTTTGAAGTTTCACTCAC
84708 GTTAAGCTCA
Statistics
Matches: 618, Mismatches: 89, Indels: 38
0.83 0.12 0.05
Matches are distributed among these distances:
625 4 0.01
626 1 0.00
627 526 0.85
628 10 0.02
629 3 0.00
631 4 0.01
632 5 0.01
633 8 0.01
634 17 0.03
635 2 0.00
636 38 0.06
ACGTcount: A:0.24, C:0.20, G:0.17, T:0.39
Consensus pattern (623 bp):
TCCACATCTCTGTATCTCATCAGGAAGATGACCGCTTTATTGCTTTGACCCACTTCTCTGTATCT
CATTAGAAAGATAGGGGTTTGAAGTTTCACTCACATTGAGCCTTACTTCATTGATTTGATCTACT
TCTCTGTATCTCATCAGGAAGATGACCGCTTCACTGATTTAATCCACTTCTCTGAATCTCATCGA
AAAGACAGATTTGGTCAACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTGCTTTGACCC
ACTTATATGTATCTCATCAGGAAGATGGGGATTTGAAGTTTCACTCAAATTGAGCTTTGTGTAAT
TGATTTGATCTACTTCTCTGTATCTCACTAGGAAGATAACCGCTTCATTGATTTAATACACTTCT
TTGTATCTCATCAGGAAGGCAAATTTGGTCCACTTCTCTATATCTCATCAAGAAGATGACCACTT
TATTACATTAACCCACTTCTCTGTATCTCATCAGGAAGATGGAGTTTTAACTTTCACTCACAGGA
AGATCCGCTTCATTGATTTGATTCACTTCTCTGTATCTCATCAGGAAGATGATCGCATATTGATT
TAATCAACTTCTAAGTATCTCATAGAAAGCAGATTTGG
Found at i:84662 original size:294 final size:294
Alignment explanation
Indices: 84099--84683 Score: 683
Period size: 294 Copynumber: 2.0 Consensus size: 294
84089 TTGCTTCATT
* * * * * * *
84099 GATTTGATCTACTTCTTTGTATCTCATTAGGAAGATGGCCGCTTCACTGATTTAATCCACTTCTC
1 GATTTGATCCACTTCTCTATATCTCATCAGGAAGATGACCACTTCACTGATTTAACCCACTTCTC
* *
84164 TGAATCTCATCAGGAAGGCAGATTTGGTCAACTTCTCTGTATCTCATTAGGAATATGACCGCTTT
66 TGAATCTCATCAGGAAGGCAGATTTGGTCAACTTCTCTGTATCTCATCAGGAAGATGACCGCTTT
* * * * * * * * * *
84229 ATTGCTTTGACCCACTTATTTGTATCTTATCAGGTATATGGGGGTTTGAAGTTTCACTCACATTG
131 ATTACTTTGACCCACTTATCTGTATCTCATCAGGAAGATAGGGATTTGAAGTTTAACTAACATTA
** * *
84294 AGCTTTGCTTAATTGATTTTGTCTACTTCTCTGTATCTCACTAGGAAGATAACCGCTTCATTGAT
196 AGCTTCACTTAATTGATTTTGTCTACATCTCTGTATCTCACTAGGAAGATAACCGCTTCATTCAT
* *
84359 TTAATCCACTTCTTTGTGTCTCATCAGGAAGGCA
261 TTAATCCACTTCTCTGTATCTCATCAGGAAGGCA
* * * * *
84393 GATTTGGTCCACTTCTCTATATCTTATCAGGAAGATGACCACTTTATTGCTTTAACCCACTTCTC
1 GATTTGATCCACTTCTCTATATCTCATCAGGAAGATGACCACTTCACTGATTTAACCCACTTCTC
* ** * *
84458 TGTATCTCATCAGGAAGGTGGGTTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTT
66 TGAATCTCATCAGGAAGGCAGATTTGGTCAACTTCTCTGTATCTCATCAGGAAGATGACCGCTTT
* ** * *
84523 ATTATTTTGATTCACTTCTCTGTATCTCATCAGGAAGATAGGGATTTGAAGTTTAACTAACTTTA
131 ATTACTTTGACCCACTTATCTGTATCTCATCAGGAAGATAGGGATTTGAAGTTTAACTAACATTA
* * * * *
84588 AGCTTCATTTCATTG-TTTTGGT-TCACATCTCTGTATCTTA-TCAGGAAGATAACTGCTTTA-T
196 AGCTTCACTTAATTGATTTT-GTCT-ACATCTCTGTATCTCACT-AGGAAGATAACCGCTTCATT
* *
84649 CATTTTGATCCACTTCTCTGTATCTCATTAGGAAG
258 CA-TTTAATCCACTTCTCTGTATCTCATCAGGAAG
84684 ATGGGGGTTT
Statistics
Matches: 240, Mismatches: 47, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
293 8 0.03
294 232 0.97
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.39
Consensus pattern (294 bp):
GATTTGATCCACTTCTCTATATCTCATCAGGAAGATGACCACTTCACTGATTTAACCCACTTCTC
TGAATCTCATCAGGAAGGCAGATTTGGTCAACTTCTCTGTATCTCATCAGGAAGATGACCGCTTT
ATTACTTTGACCCACTTATCTGTATCTCATCAGGAAGATAGGGATTTGAAGTTTAACTAACATTA
AGCTTCACTTAATTGATTTTGTCTACATCTCTGTATCTCACTAGGAAGATAACCGCTTCATTCAT
TTAATCCACTTCTCTGTATCTCATCAGGAAGGCA
Found at i:84700 original size:124 final size:124
Alignment explanation
Indices: 84480--84715 Score: 346
Period size: 124 Copynumber: 1.9 Consensus size: 124
84470 GGAAGGTGGG
* * * *
84480 TTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTATTTTGATTCACTTCTCTG
1 TTTGGTCCACATCTCTGTATCTCATCAGGAAGATAACCGCTTTATCATTTTGATCCACTTCTCTG
* *
84545 TATCTCATCAGGAAGATAGGGATTTGAAGTTTAACTAACTTTAAGCTTCATTTCATTGT
66 TATCTCATCAGGAAGATAGGGATTTAAAGTTTAACTAACGTTAAGCTTCATTTCATTGT
* * *
84604 TTTGGTTCACATCTCTGTATCTTATCAGGAAGATAACTGCTTTATCATTTTGATCCACTTCTCTG
1 TTTGGTCCACATCTCTGTATCTCATCAGGAAGATAACCGCTTTATCATTTTGATCCACTTCTCTG
* * * * *
84669 TATCTCATTAGGAAGATGGGGGTTTAAAGTTTCACTCACGTTAAGCT
66 TATCTCATCAGGAAGATAGGGATTTAAAGTTTAACTAACGTTAAGCT
84716 CAACTTTATT
Statistics
Matches: 98, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
124 98 1.00
ACGTcount: A:0.24, C:0.19, G:0.17, T:0.40
Consensus pattern (124 bp):
TTTGGTCCACATCTCTGTATCTCATCAGGAAGATAACCGCTTTATCATTTTGATCCACTTCTCTG
TATCTCATCAGGAAGATAGGGATTTAAAGTTTAACTAACGTTAAGCTTCATTTCATTGT
Found at i:84842 original size:44 final size:44
Alignment explanation
Indices: 84782--84932 Score: 171
Period size: 44 Copynumber: 3.4 Consensus size: 44
84772 CTTGACTTAG
* *
84782 GGGGTAAAAGATTGGATGATTGCTTTAATATGCCCTTCTTATTA
1 GGGGTAAAAGATTGGATGATTGCTTTAATCTACCCTTCTTATTA
* * * *
84826 GGGGTAAAAGATTGGATGATGGCTTCAATCCACCCCTCTTGACTTA
1 GGGGTAAAAGATTGGATGATTGCTTTAATCTACCCTTCTT-A-TTA
* *
84872 AGGGTAAAAGATTGGATGA-TGACTTTAATCTACCCCTT-TGGATTA
1 GGGGTAAAAGATTGGATGATTG-CTTTAATCTA-CCCTTCT-TATTA
84917 GGGGTAAAAGATTGGA
1 GGGGTAAAAGATTGGA
84933 CAGTAACTTC
Statistics
Matches: 89, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
44 34 0.38
45 20 0.22
46 31 0.35
47 4 0.04
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.32
Consensus pattern (44 bp):
GGGGTAAAAGATTGGATGATTGCTTTAATCTACCCTTCTTATTA
Found at i:84947 original size:45 final size:44
Alignment explanation
Indices: 84770--85239 Score: 328
Period size: 45 Copynumber: 10.6 Consensus size: 44
84760 CAATCTGTCG
* * * *
84770 CTCTTGACTTAGGGGGTAAAAGATTGGATGATTG-CTTTAATATGCCC
1 CTCTTGA-TTA-GGGGTAAAAGATTGGA--AGTGACTTCAATCTACCC
* * * *
84817 TTCTT-ATTAGGGGTAAAAGATTGGATGATGGCTTCAATCCACCC
1 CTCTTGATTAGGGGTAAAAGATTGGAAG-TGACTTCAATCTACCC
* * *
84861 CTCTTGACTTAAGGGTAAAAGATTGGATGATGACTTTAATCTACCC
1 CTCTTGA-TTAGGGGTAAAAGATTGGAAG-TGACTTCAATCTACCC
*
84907 CT-TTGGATTAGGGGTAAAAGATTGGACAGTAACTTCAATCTACCC
1 CTCTT-GATTAGGGGTAAAAGATTGGA-AGTGACTTCAATCTACCC
* * * ** * * * *
84952 CTCTTGACTAAGGTTAAAATTTTGGAA-TGGCTTTAACCTGCCC
1 CTCTTGATTAGGGGTAAAAGATTGGAAGTGACTTCAATCTACCC
* * * * * *
84995 CTCTAGGTTAGAGGTAAAAGGTTGGACGGTGACTTCAATCTGCCC
1 CTCTTGATTAGGGGTAAAAGATTGGA-AGTGACTTCAATCTACCC
* * * * * *
85040 CTTTTGACTA-GGGTAAAAGATTGAAAGATGGCTTCAATTTGCCC
1 CTCTTGATTAGGGGTAAAAGATTGGAAG-TGACTTCAATCTACCC
* * * *
85084 CTCATAACTAGGGGTAAAAGATTGGAAG-GA-TTCAATCTATCC
1 CTCTTGATTAGGGGTAAAAGATTGGAAGTGACTTCAATCTACCC
* * *
85126 CTCTTGATTAGGGGTAAAAGATTGGAA-TGGCTTCAACCTGCCC
1 CTCTTGATTAGGGGTAAAAGATTGGAAGTGACTTCAATCTACCC
* * * * *
85169 CTCTGGATTAAGGGTAAAAGCTTGAAAGATGGCTTCAAT-TAACCC
1 CTCTTGATTAGGGGTAAAAGATTGGAAG-TGACTTCAATCT-ACCC
* * *
85214 CTCTTGACTAGAGGTAAATGATTGGA
1 CTCTTGATTAGGGGTAAAAGATTGGA
85240 TGATTATGTA
Statistics
Matches: 331, Mismatches: 76, Indels: 34
0.75 0.17 0.08
Matches are distributed among these distances:
42 34 0.10
43 65 0.20
44 64 0.19
45 122 0.37
46 42 0.13
47 4 0.01
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (44 bp):
CTCTTGATTAGGGGTAAAAGATTGGAAGTGACTTCAATCTACCC
Found at i:85030 original size:88 final size:90
Alignment explanation
Indices: 84783--85239 Score: 386
Period size: 88 Copynumber: 5.2 Consensus size: 90
84773 TTGACTTAGG
* * ** * * * *
84783 GGGTAAAAGATTGGATGATTGCTTTAATATGCCCTTCT--TATTAGGGGTAAAAGATTGGATGAT
1 GGGTAAAAGATTGGA-GATGGCTTCAACCTGCCCCTCTAGGATTAGGGGTAAAAGATTGGACGGT
* *
84846 GGCTTCAATCCACCCCTCTTGACTTAA
65 GACTTCAATCTACCCCTCTTGAC-TAA
* * * * * *
84873 GGGTAAAAGATTGGATGATGACTTTAATCTACCCCT-TTGGATTAGGGGTAAAAGATTGGACAGT
1 GGGTAAAAGATTGGA-GATGGCTTCAACCTGCCCCTCTAGGATTAGGGGTAAAAGATTGGACGGT
*
84937 AACTTCAATCTACCCCTCTTGACTAA
65 GACTTCAATCTACCCCTCTTGACTAA
* ** * * *
84963 GGTTAAAATTTTGGA-ATGGCTTTAACCTGCCCCTCTAGG-TTAGAGGTAAAAGGTTGGACGGTG
1 GGGTAAAAGATTGGAGATGGCTTCAACCTGCCCCTCTAGGATTAGGGGTAAAAGATTGGACGGTG
* *
85026 ACTTCAATCTGCCCCTTTTGACT-A
66 ACTTCAATCTACCCCTCTTGACTAA
* ** * *
85050 GGGTAAAAGATTGAAAGATGGCTTCAATTTGCCCCTCATA--ACTAGGGGTAAAAGATTGGA-AG
1 GGGTAAAAGATTG-GAGATGGCTTCAACCTGCCCCTC-TAGGATTAGGGGTAAAAGATTGGACGG
* * *
85112 -GA-TTCAATCTATCCCTCTTGATTAG
64 TGACTTCAATCTACCCCTCTTGACTAA
* * * * *
85137 GGGTAAAAGATTGGA-ATGGCTTCAACCTGCCCCTCT-GGATTAAGGGTAAAAGCTTGAAAGATG
1 GGGTAAAAGATTGGAGATGGCTTCAACCTGCCCCTCTAGGATTAGGGGTAAAAGATTGGACGGTG
*
85200 GCTTCAAT-TAACCCCTCTTGACT-A
66 ACTTCAATCT-ACCCCTCTTGACTAA
*
85224 GAGGTAAATGATTGGA
1 G-GGTAAAAGATTGGA
85240 TGATTATGTA
Statistics
Matches: 297, Mismatches: 55, Indels: 32
0.77 0.14 0.08
Matches are distributed among these distances:
84 1 0.00
85 34 0.11
86 18 0.06
87 29 0.10
88 89 0.30
89 37 0.12
90 48 0.16
91 41 0.14
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (90 bp):
GGGTAAAAGATTGGAGATGGCTTCAACCTGCCCCTCTAGGATTAGGGGTAAAAGATTGGACGGTG
ACTTCAATCTACCCCTCTTGACTAA
Found at i:85549 original size:49 final size:49
Alignment explanation
Indices: 85488--85704 Score: 199
Period size: 49 Copynumber: 4.4 Consensus size: 49
85478 CTGCTTCCCT
* *** * *
85488 ACATCTTCAGGGTATAAGATTCACCGTTGAGGATTCAATCTTTCCCTTC
1 ACATCTTTAGGGTATAAGATTTGTCGTTGAGGCTTCAACCTTTCCCTTC
* *
85537 ACATCTTTAGGGTATAAGGTTTGTCGTTGTGGCTTTC-ACCTTTCCC-TC
1 ACATCTTTAGGGTATAAGATTTGTCGTTGAGGC-TTCAACCTTTCCCTTC
** * * **
85585 TTTATCTTTAGGCTATAAGATTTGTCGTTGCGGCTTCAGTCTTTCCCTTC
1 -ACATCTTTAGGGTATAAGATTTGTCGTTGAGGCTTCAACCTTTCCCTTC
** * * *
85635 ACATCACTAAGGTATAAGGTTTGTCGTT-ACGGCTTCAACCTTTCCCATC
1 ACATCTTTAGGGTATAAGATTTGTCGTTGA-GGCTTCAACCTTTCCCTTC
85684 ACATCTATTA-GGTATAAGATT
1 ACATCT-TTAGGGTATAAGATT
85705 CGTCATTGTA
Statistics
Matches: 133, Mismatches: 29, Indels: 12
0.76 0.17 0.07
Matches are distributed among these distances:
48 5 0.04
49 121 0.91
50 7 0.05
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.39
Consensus pattern (49 bp):
ACATCTTTAGGGTATAAGATTTGTCGTTGAGGCTTCAACCTTTCCCTTC
Found at i:85700 original size:98 final size:97
Alignment explanation
Indices: 85486--85705 Score: 255
Period size: 98 Copynumber: 2.2 Consensus size: 97
85476 ATCTGCTTCC
* ** *
85486 CTACATCTTCAGGGTATAAGATTCACCGTTGAGGATTCAATCTTTCCCTTCACATCTTTAGGGTA
1 CTACATCTTTA-GGTATAAGATTCACCGTTGAGGATTCAATCTTTCCCTTCACATCACTAAGGTA
**
85551 TAAGGTTTGTCGTTGTGGCTTTCACCTTTCCCT
65 TAAGGTTTGTCGTTACGGCTTTCACCTTTCCCT
** *** * * *
85584 CTTTATCTTTAGGCTATAAGATTTGTCGTTGCGGCTTCAGTCTTTCCCTTCACATCACTAAGGTA
1 CTACATCTTTAGG-TATAAGATTCACCGTTGAGGATTCAATCTTTCCCTTCACATCACTAAGGTA
85649 TAAGGTTTGTCGTTACGGC-TTCAACCTTTCCCAT
65 TAAGGTTTGTCGTTACGGCTTTC-ACCTTTCCC-T
85683 C-ACATCTATTAGGTATAAGATTC
1 CTACATCT-TTAGGTATAAGATTC
85706 GTCATTGTAG
Statistics
Matches: 101, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
97 5 0.05
98 89 0.88
99 7 0.07
ACGTcount: A:0.21, C:0.23, G:0.17, T:0.39
Consensus pattern (97 bp):
CTACATCTTTAGGTATAAGATTCACCGTTGAGGATTCAATCTTTCCCTTCACATCACTAAGGTAT
AAGGTTTGTCGTTACGGCTTTCACCTTTCCCT
Found at i:86612 original size:7 final size:7
Alignment explanation
Indices: 86600--86648 Score: 62
Period size: 7 Copynumber: 6.7 Consensus size: 7
86590 TGATCTCTCC
86600 TTTTTCT
1 TTTTTCT
86607 TTTTTCT
1 TTTTTCT
86614 TTTTTCT
1 TTTTTCT
*
86621 TTTTCTTT
1 TTTT-TCT
86629 TCTTTTCT
1 T-TTTTCT
*
86637 TTTCTCT
1 TTTTTCT
86644 TTTTT
1 TTTTT
86649 GGGTAAAATG
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
7 27 0.75
8 6 0.17
9 3 0.08
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (7 bp):
TTTTTCT
Found at i:86616 original size:5 final size:5
Alignment explanation
Indices: 86601--86641 Score: 50
Period size: 5 Copynumber: 8.2 Consensus size: 5
86591 GATCTCTCCT
86601 TTTTC TTTT- TTCTT- TTTTC TTTTTC TTTTC TTTTC TTTTC T
1 TTTTC TTTTC TT-TTC TTTTC -TTTTC TTTTC TTTTC TTTTC T
86642 CTTTTTTGGG
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
4 4 0.12
5 24 0.73
6 5 0.15
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (5 bp):
TTTTC
Found at i:92387 original size:30 final size:30
Alignment explanation
Indices: 92344--92487 Score: 134
Period size: 30 Copynumber: 4.8 Consensus size: 30
92334 TCAAATAATT
92344 TTTTTTGGAAAGTTTGGGGGTTAAATCCT-AA
1 TTTTTTGG-AAGTTTGGGGGTTAAAT-CTAAA
* * *
92375 TTTTTTGGAAGTTTAGGGGTCAAATCTGAA
1 TTTTTTGGAAGTTTGGGGGTTAAATCTAAA
* ** *
92405 TTTTTGGGAAG-TTAAGGGTCAAATCTAAA
1 TTTTTTGGAAGTTTGGGGGTTAAATCTAAA
* * *
92434 TTTTTGGGAAGTTCGAGGGTCT-AATCTAAA
1 TTTTTTGGAAGTTTGGGGGT-TAAATCTAAA
92464 -TTTTTGGATAGTTTGGGGGTTAAA
1 TTTTTTGGA-AGTTTGGGGGTTAAA
92488 ATGTAATTTT
Statistics
Matches: 97, Mismatches: 11, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
29 37 0.38
30 52 0.54
31 8 0.08
ACGTcount: A:0.27, C:0.06, G:0.27, T:0.40
Consensus pattern (30 bp):
TTTTTTGGAAGTTTGGGGGTTAAATCTAAA
Found at i:94607 original size:80 final size:80
Alignment explanation
Indices: 94416--94636 Score: 243
Period size: 80 Copynumber: 2.8 Consensus size: 80
94406 AATGTAAGGG
* * *
94416 CCCTCCGATAGCCAAGATCCTGCATATGTTGC-AGATTCTTGACAGCTTGTGTGAGCAGCATCGT
1 CCCTCCGATGGCTAAGATCCTACATATGTTGCGA-ATTCTTGACAGCTTGTGTGAGCAGCATCGT
*
94480 GAGTGGATAAAGTGAA
65 GAGTGGATAAAATGAA
*
94496 CCCTCCGATGGCTAAGATCCTACATACGTTGCGAATTCTTGACAGCTTGTGTGAGCTA-CATCGT
1 CCCTCCGATGGCTAAGATCCTACATATGTTGCGAATTCTTGACAGCTTGTGTGAGC-AGCATCGT
*
94560 GAGTGGATAAAATGGA
65 GAGTGGATAAAATGAA
** * * * * ** *
94576 CTGTATCGATGGCTGAG-T-CTGTCATATGTTGCGGATTCTCAACAGCTTGTATGAGCAGCAT
1 CCCT-CCGATGGCTAAGATCCT-ACATATGTTGCGAATTCTTGACAGCTTGTGTGAGCAGCAT
94637 TGTATACTGG
Statistics
Matches: 120, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
79 3 0.03
80 105 0.88
81 12 0.10
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.29
Consensus pattern (80 bp):
CCCTCCGATGGCTAAGATCCTACATATGTTGCGAATTCTTGACAGCTTGTGTGAGCAGCATCGTG
AGTGGATAAAATGAA
Found at i:95362 original size:4 final size:4
Alignment explanation
Indices: 95348--95497 Score: 86
Period size: 4 Copynumber: 36.5 Consensus size: 4
95338 AATTTAAAAA
* * * * * *
95348 TATT TATTT TATT TATT TAAT TATT TGTTT TATT TAAT TAGT TAAT TATA
1 TATT TA-TT TATT TATT TATT TATT T-ATT TATT TATT TATT TATT TATT
* * * * * *
95398 TATA TATA TATAT T-TT TAGT TAAT TATT TATTT TATT TAGT TAAT TATT
1 TATT TATT TAT-T TATT TATT TATT TATT TA-TT TATT TATT TATT TATT
* * * * * *
95447 TAGT TATT TATTT TGTT TATT TTTT TATT CAGT TATT TATT TACT TATT
1 TATT TATT TA-TT TATT TATT TATT TATT TATT TATT TATT TATT TATT
95496 TA
1 TA
95498 CTTAGTTAAA
Statistics
Matches: 112, Mismatches: 28, Indels: 12
0.74 0.18 0.08
Matches are distributed among these distances:
3 2 0.02
4 95 0.85
5 15 0.13
ACGTcount: A:0.28, C:0.01, G:0.05, T:0.66
Consensus pattern (4 bp):
TATT
Found at i:95465 original size:29 final size:29
Alignment explanation
Indices: 95421--95488 Score: 91
Period size: 29 Copynumber: 2.3 Consensus size: 29
95411 TTTTAGTTAA
*
95421 TTATTTATTTTATTTAGTTAATTATTTAG
1 TTATTTATTTTATTTAGTTAATTATTCAG
* * **
95450 TTATTTATTTTGTTTATTTTTTTATTCAG
1 TTATTTATTTTATTTAGTTAATTATTCAG
95479 TTATTTATTT
1 TTATTTATTT
95489 ACTTATTTAC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.22, C:0.01, G:0.06, T:0.71
Consensus pattern (29 bp):
TTATTTATTTTATTTAGTTAATTATTCAG
Found at i:97864 original size:15 final size:15
Alignment explanation
Indices: 97833--97870 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
97823 TTAATAAAAA
97833 TAAATGTAACAATATT
1 TAAAT-TAACAATATT
97849 TAAATTAACGAA-ATT
1 TAAATTAAC-AATATT
97864 TAAATTA
1 TAAATTA
97871 TCATATTACC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 14 0.67
16 7 0.33
ACGTcount: A:0.53, C:0.05, G:0.05, T:0.37
Consensus pattern (15 bp):
TAAATTAACAATATT
Found at i:102274 original size:22 final size:23
Alignment explanation
Indices: 102246--102292 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
102236 TTAAAGCATA
* *
102246 TAAGTATTTCATAT-ATTAATAT
1 TAAGTATTTAATATAATTAAGAT
102268 TAAGTATTTAATATAATTAAGAT
1 TAAGTATTTAATATAATTAAGAT
102291 TA
1 TA
102293 TATAAATATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 13 0.59
23 9 0.41
ACGTcount: A:0.45, C:0.02, G:0.06, T:0.47
Consensus pattern (23 bp):
TAAGTATTTAATATAATTAAGAT
Found at i:102292 original size:23 final size:22
Alignment explanation
Indices: 102232--102292 Score: 68
Period size: 22 Copynumber: 2.6 Consensus size: 22
102222 ATTAAATTTT
*
102232 TATATTAAAGCATATAAGTATTTCA
1 TATATT-AAG-AT-TAAGTATTTAA
*
102257 TATATTAATATTAAGTATTTAA
1 TATATTAAGATTAAGTATTTAA
102279 TATAATTAAGATTA
1 TAT-ATTAAGATTA
102293 TATAAATATT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
22 13 0.41
23 11 0.34
24 2 0.06
25 6 0.19
ACGTcount: A:0.46, C:0.03, G:0.07, T:0.44
Consensus pattern (22 bp):
TATATTAAGATTAAGTATTTAA
Found at i:114677 original size:4 final size:4
Alignment explanation
Indices: 114661--114725 Score: 121
Period size: 4 Copynumber: 16.2 Consensus size: 4
114651 TATCATGTAC
*
114661 ACAT ACGT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
114709 ACAT ACAT ACAT ACAT A
1 ACAT ACAT ACAT ACAT A
114726 TTAGTAAAAT
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
4 59 1.00
ACGTcount: A:0.49, C:0.25, G:0.02, T:0.25
Consensus pattern (4 bp):
ACAT
Found at i:115632 original size:3 final size:3
Alignment explanation
Indices: 115621--115654 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
115611 TAATAAGCAC
*
115621 TAA TGA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
115655 GATGATGATG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:115682 original size:9 final size:9
Alignment explanation
Indices: 115621--115683 Score: 54
Period size: 9 Copynumber: 7.0 Consensus size: 9
115611 TAATAAGCAC
115621 TAATGATAA
1 TAATGATAA
*
115630 TAATAATAA
1 TAATGATAA
*
115639 TAATAATAA
1 TAATGATAA
* *
115648 TAATAATGA
1 TAATGATAA
* *
115657 TGATGATGA
1 TAATGATAA
*
115666 TGATGATAA
1 TAATGATAA
*
115675 TGATGATAA
1 TAATGATAA
115684 CAGAACGATT
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 49 1.00
ACGTcount: A:0.52, C:0.00, G:0.14, T:0.33
Consensus pattern (9 bp):
TAATGATAA
Found at i:120492 original size:21 final size:21
Alignment explanation
Indices: 120466--120522 Score: 78
Period size: 21 Copynumber: 2.7 Consensus size: 21
120456 GTGCCTAGTA
*
120466 GGCTTTGTGCCGGTGTAATCG
1 GGCTTTGTGCCAGTGTAATCG
*
120487 GGCTTTGTGCCAGTGTAATTG
1 GGCTTTGTGCCAGTGTAATCG
* *
120508 AGTTTTGTGCCAGTG
1 GGCTTTGTGCCAGTG
120523 ACCAAAGAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.12, C:0.16, G:0.35, T:0.37
Consensus pattern (21 bp):
GGCTTTGTGCCAGTGTAATCG
Done.