Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01010703.1 Kokia drynarioides strain JFW-HI SEQ_125651, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2834
ACGTcount: A:0.38, C:0.18, G:0.21, T:0.23
Found at i:1452 original size:143 final size:143
Alignment explanation
Indices: 1194--1479 Score: 563
Period size: 143 Copynumber: 2.0 Consensus size: 143
1184 TAATCAGTCG
1194 ACAGACTCAACTATTGCAAGAAGTAGAGAAAGGAAACTCTATAGTAAGCCCAAGGGAGGAGAGTG
1 ACAGACTCAACTATTGCAAGAAGTAGAGAAAGGAAACTCTATAGTAAGCCCAAGGGAGGAGAGTG
*
1259 AAGACCCTTAATACCCTCTTGGCTTTACCCCCACACATAATCAAATTCCACCAGAAACACACTCG
66 AAGACCCTCAATACCCTCTTGGCTTTACCCCCACACATAATCAAATTCCACCAGAAACACACTCG
1324 CGAGGAGCTCCAA
131 CGAGGAGCTCCAA
1337 ACAGACTCAACTATTGCAAGAAGTAGAGAAAGGAAACTCTATAGTAAGCCCAAGGGAGGAGAGTG
1 ACAGACTCAACTATTGCAAGAAGTAGAGAAAGGAAACTCTATAGTAAGCCCAAGGGAGGAGAGTG
1402 AAGACCCTCAATACCCTCTTGGCTTTACCCCCACACATAATCAAATTCCACCAGAAACACACTCG
66 AAGACCCTCAATACCCTCTTGGCTTTACCCCCACACATAATCAAATTCCACCAGAAACACACTCG
1467 CGAGGAGCTCCAA
131 CGAGGAGCTCCAA
1480 TCTTCATCAG
Statistics
Matches: 142, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
143 142 1.00
ACGTcount: A:0.37, C:0.27, G:0.19, T:0.17
Consensus pattern (143 bp):
ACAGACTCAACTATTGCAAGAAGTAGAGAAAGGAAACTCTATAGTAAGCCCAAGGGAGGAGAGTG
AAGACCCTCAATACCCTCTTGGCTTTACCCCCACACATAATCAAATTCCACCAGAAACACACTCG
CGAGGAGCTCCAA
Done.