Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01010704.1 Kokia drynarioides strain JFW-HI SEQ_125652, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4461
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.27
Warning! 50 characters in sequence are not A, C, G, or T
Found at i:2082 original size:347 final size:347
Alignment explanation
Indices: 1194--4461 Score: 4254
Period size: 347 Copynumber: 9.4 Consensus size: 347
1184 NNNNNNNAAA
* *
1194 AAAAAAAACAAAAAGAGGGGTGCAACAGGAGGACTTCCCAGGAGGTGACCCATCCTAGTACTACT
1 AAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACT
* * * * * * *
1259 CTCACCCAAGCACGCTTCACTGCGAAGTTTTGATGGGATCCGGTGCATTAATGCTGGTATGATCA
66 CTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGAGCATTAGTGCTGGTATGATCG
* * * * * *
1324 CACCCATTATG-CTCTGCGCATTCTATTTACGTAAAGATTAACTTTCATCCCATTCGTGCCTCAA
131 CACCCATTATGTTTC-GCGCAATCTATTTACATAAAGGTTACCTTTCATCCCATTCGTGCCTCGA
* *
1388 ATTTGAATGTAAATATACCCAAATAATGCTCGGAAAGACGTATTTTCGCGGATAAAAAGAAAATA
195 ATTTGAATGTAAATATACCCAAATAATGCTCGGGAAGACGTATTTTCGCGGATAAAAATAAAATA
* * * ** ** *
1453 AATATACTCTAAAAATGTCCATATATCCCATGAAGCTTTACTATTTAACAAAATTATAAATTTTC
260 AAAATACGCTAATAATGTCCATATATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAATTTAC
1518 GATAAATAAAATAATACAAAAAGAAAAG
325 GATAAATAAAATAATAC----A-AAAAG
* * ** * * *
1546 AAAAAAAACAAAATGAGGAGTAAAACACGAGGACTTCGCAGAAGGTCACCTATCCTAGTACTACT
1 AAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACT
* * ** *
1611 CTCGCCCAAGCACGCTTAACTGCGGAGTTTTGATGAGATCC-GATGCATTAGTGCTAATATGATT
66 CTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGA-GCATTAGTGCTGGTATGATC
* * *
1675 GCACCCAATATGTTTTGCGCAATCTATTTACATAAAGGTTACCTTTCATTCCATTCGTGCCTCGA
130 GCACCCATTATGTTTCGCGCAATCTATTTACATAAAGGTTACCTTTCATCCCATTCGTGCCTCGA
* * * *
1740 ATTTGAATGTAAATATACCAAAACAAGGCTCGGGAAGACGTATTTTCACGGATAAAAATAAAATA
195 ATTTGAATGTAAATATACCCAAATAATGCTCGGGAAGACGTATTTTCGCGGATAAAAATAAAATA
* * * * *
1805 AAATTACGCCAATAATGTCCATATATCCCATAAAGCTTTACTATTTCGGAAAATTGTAAATTTAC
260 AAAATACGCTAATAATGTCCATATATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAATTTAC
1870 GATAAATAAAATAATACAAAAAG
325 GATAAATAAAATAATACAAAAAG
** * ** * * * *
1893 AAAAAAAACAAAAAGAGGGGTGCAACAAAAAGTTTTCCCAGGAGATCACCCAACCTAATACTTCT
1 AAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACT
* * * * * *
1958 CTCGCCCAAGCACACATAACTGCAGAGTTCTGATGGGATCCGGAACATTAGTGCTAGTATGATTG
66 CTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGAGCATTAGTGCTGGTATGATCG
* * *
2023 CACCCAATATGTTTCGCGCAATCTATTTACTTAAAGGTTACCTTTCATTCCATTCGTGCCTCGAA
131 CACCCATTATGTTTCGCGCAATCTATTTACATAAAGGTTACCTTTCATCCCATTCGTGCCTCGAA
* * * *
2088 TTTGAATGTAAATATACCCAAAAAAGGCTCGAGAAGTCGTATTTTCGCGGATAAAAATAAAAT-A
196 TTTGAATGTAAATATACCCAAATAATGCTCGGGAAGACGTATTTTCGCGGATAAAAATAAAATAA
* *
2152 AAATAATGCTAATAATGTCCATATATCCCATGAAGCTTTACTATTTCGTAAAATTGCAAATTTAC
261 AAAT-ACGCTAATAATGTCCATATATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAATTTAC
*
2217 GATGAATAAAATAATACAAAAAG
325 GATAAATAAAATAATACAAAAAG
* *
2240 AAAAAAAAAACAAAAAGAGGGATGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACAA
1 --AAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTA
* * * ** * * * * *
2305 CTCTCACCCAAGAACGCTTATCAACAGAGTTCTAATGGGATCCTGTGCGTTAGTGCTGGTATGAT
64 CTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGAGCATTAGTGCTGGTATGAT
* * * *
2370 CGCACTCATTATGTTTTGCGCAATCTATTTACGTAAAGGCTACCTTTCATCCCATTCGTGCCTCG
129 CGCACCCATTATGTTTCGCGCAATCTATTTACATAAAGGTTACCTTTCATCCCATTCGTGCCTCG
* *
2435 AATTTGGATGTAAATATACCCAAATAATGCTCGGGAAGACGTATTTTCACGGATAAAAATAAAAT
194 AATTTGAATGTAAATATACCCAAATAATGCTCGGGAAGACGTATTTTCGCGGATAAAAATAAAAT
*
2500 AAAAATACGCTAATAATGTCC--ATATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAATTTT
259 AAAAATACGCTAATAATGTCCATATATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAATTTA
*
2563 CGATAAACAAAATAATACAAAAAG
324 CGATAAATAAAATAATACAAAAAG
* *
2587 AAAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTTCCAGGACGTCACCCATCCTAGTACTAC
1 -AAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTAC
* * * **
2652 TCTCGCCCAAGCACGCTTAGCAGCGGAGTTCTGATGGGATCCGGTGCATTAGCACTGGTATGATC
65 TCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGAGCATTAGTGCTGGTATGATC
* * *
2717 GCACCCATTATG-TTCTGCGCAATCTATTTATATAAAGGTTACGTTTCATTCCATTCGTGCCTCG
130 GCACCCATTATGTTTC-GCGCAATCTATTTACATAAAGGTTACCTTTCATCCCATTCGTGCCTCG
* * * * * * *
2781 AATTTGAATGTAAATATA-CCAAAAAATGCTCAGGAACAAGTGTTTTCGCGGGTATAAATAAAAT
194 AATTTGAATGTAAATATACCCAAATAATGCTCGGGAAGACGTATTTTCGCGGATAAAAATAAAAT
*
2845 AAAAATACGCTAATAATGTCCATATATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAATTTT
259 AAAAATACGCTAATAATGTCCATATATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAATTTA
* *
2910 TGATAAATAAAATAATACAAAAGG
324 CGATAAATAAAATAATACAAAAAG
* * *
2934 AAAAAAAACAAAAAGAGAGGTGCAACACGAGGACTTCCTAGGAGGTCACCCATCCTAGTACAACT
1 AAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACT
* * * * *
2999 CTCGCCTAAGCATGGTTAACTGCGAAGTTTTGATGGGATCC-GATGCATTAGTGCTGGTATGATC
66 CTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGA-GCATTAGTGCTGGTATGATC
* * * ** * * *
3063 ACACCCATTATG-CTCTGCGCATTCTATTTATGTAAA-GATACCTTTCATCCCATTCCTTCCTCG
130 GCACCCATTATGTTTC-GCGCAATCTATTTACATAAAGGTTACCTTTCATCCCATTCGTGCCTCG
* * *
3126 AATTTGAATGTAAATATACCCAAATAATGCTCGGGAAGAAGTATTTTCACAGATAAAAATAAAAT
194 AATTTGAATGTAAATATACCCAAATAATGCTCGGGAAGACGTATTTTCGCGGATAAAAATAAAAT
* *
3191 AAAAATACTCTAATAATGTCCATATATCCCATGAAGCTTTACTATTTCGCAAAATTGTAAATTTA
259 AAAAATACGCTAATAATGTCCATATATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAATTTA
3256 CGATAAATAAAATAATACAAAAAG
324 CGATAAATAAAATAATACAAAAAG
*
3280 AAAAAAAACAAAAAGAAGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACT
1 AAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACT
* * * * * *
3345 TTCTCCCAAGCACACTTAACTGCGGAGTTCTGATGGGATCCGGTGTATAAGTGCTGGTATGATCG
66 CTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGAGCATTAGTGCTGGTATGATCG
* ** * ** *
3410 CACTCATTAT-CCTCTGCGCATTCTATTTAGGTAAAGGTTACCTTTCATCCCATTAGTGCCTCGA
131 CACCCATTATGTTTC-GCGCAATCTATTTACATAAAGGTTACCTTTCATCCCATTCGTGCCTCGA
* ** *
3474 ATTTAAATGTAAATATACCCAAATAATGCTCGGGAAGACGTATTTTCGTAGATAAAAACAAAATA
195 ATTTGAATGTAAATATACCCAAATAATGCTCGGGAAGACGTATTTTCGCGGATAAAAATAAAATA
* * * * * *
3539 CAAATACGCTAATAAAGTCCATTTATCCCATGAAGTTTTACTATTTCACAAAATT-CTAAATTTG
260 AAAATACGCTAATAATGTCCATATATCCCATGAAGCTTTACTATTTCGCAAAATTGC-AAATTTA
*
3603 CGATAAATAAAATAATACAAAATG
324 CGATAAATAAAATAATACAAAAAG
* * *
3627 -AGAAAAA-AAAATGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTA-AACT
1 AAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACT
* * ** * * * *
3689 CTCACCCAAGCACGCTTATCAACAGAGTTCTAATGGGATCCGGTGCATTAGTGCTGGAATGATCG
66 CTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGAGCATTAGTGCTGGTATGATCG
* * * * *
3754 CACTCATTATGTTTTGCGCAATCTATTTACATAAAGGCTACCTTTCAACCCATTCGTGCCTCAAA
131 CACCCATTATGTTTCGCGCAATCTATTTACATAAAGGTTACCTTTCATCCCATTCGTGCCTCGAA
*
3819 TTTGAATGTAAATATACCCAAATAATGCTCGGGAAGACGTATTTTTGCGGATAAAAATAAAATAA
196 TTTGAATGTAAATATACCCAAATAATGCTCGGGAAGACGTATTTTCGCGGATAAAAATAAAATAA
* * *
3884 ATATACGCTAATAATGTCCATATATCCCATGAAGCTTTACTATTTCGCAAAATTACAAATTCACG
261 AAATACGCTAATAATGTCCATATATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAATTTACG
*
3949 ATATATAAAATAATACAATCAGAA-
326 ATAAATAAAATAATACAA--A-AAG
* * * * * *
3973 AAAAAAAATAAAAAGAGGGGTGCAACATC-AGGACTCCCCAGGAGGTCACTCGTCCTTGTACTAG
1 AAAAAAAACAAAAAGAGGGGTGCAACA-CGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTAC
* * * *
4037 TCTCGCCCAAGCACACTTAACTGCGGAGTTCTAATGGGATCC-GATGCATTACTGCTAGTATGAT
65 TCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGA-GCATTAGTGCTGGTATGAT
* * * *
4101 CGCACCCATTATGTTTTC-CGCAATCTATTTACATAATGGATACCTTTCAACCCATTTGTGCCTC
129 CGCACCCATTATG-TTTCGCGCAATCTATTTACATAAAGGTTACCTTTCATCCCATTCGTGCCTC
* * * *
4165 GAATTTGAATGTAAATATACCCAAAAAATGCTTGGGAAGACGTATTTTCGTGGATAACAATAAAA
193 GAATTTGAATGTAAATATACCCAAATAATGCTCGGGAAGACGTATTTTCGCGGATAAAAATAAAA
* * *
4230 TAAAAATATGCTAATAATGCCCATATATCCCATGAAGCTTTATTATTTCGCAAAATTGCAAATTT
258 TAAAAATACGCTAATAATGTCCATATATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAATTT
* *
4295 ACAATAAATAAAATAATACAAAGAG
323 ACGATAAATAAAATAATACAAAAAG
* * *
4320 AAAAAAAAGCAAAAAGAAGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTTGTACTAG
1 AAAAAAAA-CAAAAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTAC
* * * * * * *
4385 TCTCGCCCAAGCACGCATAATTGCTGAGTTCTAATGTGATCC-GATGCATTACTGCTAGTATGAT
65 TCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGA-GCATTAGTGCTGGTATGAT
4449 CGCACCCATTATG
129 CGCACCCATTATG
Statistics
Matches: 2568, Mismatches: 318, Indels: 64
0.87 0.11 0.02
Matches are distributed among these distances:
344 242 0.09
345 153 0.06
346 609 0.24
347 612 0.24
348 169 0.07
349 481 0.19
350 8 0.00
351 1 0.00
352 292 0.11
353 1 0.00
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.27
Consensus pattern (347 bp):
AAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACT
CTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGAGCATTAGTGCTGGTATGATCG
CACCCATTATGTTTCGCGCAATCTATTTACATAAAGGTTACCTTTCATCCCATTCGTGCCTCGAA
TTTGAATGTAAATATACCCAAATAATGCTCGGGAAGACGTATTTTCGCGGATAAAAATAAAATAA
AAATACGCTAATAATGTCCATATATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAATTTACG
ATAAATAAAATAATACAAAAAG
Found at i:2452 original size:349 final size:348
Alignment explanation
Indices: 1193--4461 Score: 4310
Period size: 346 Copynumber: 9.4 Consensus size: 348
1183 NNNNNNNNAA
* *
1193 AAAAAAAAACAAAAAGAGGGGTGCAACAGGAGGACTTCCCAGGAGGTGACCCATCCTAGTACTAC
1 AAAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTAC
* * * * *
1258 TCTCACCCAAGCACGCTTCACTGCGAAGTTTTGATGGGATCCGGTGCATTAATGCTGGTATGATC
66 TCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATC
* * * * * * * *
1323 ACACCCATTATGCTCTGCGCATTCTATTTACGTAAAGATTAACTTTCATCCCATTCGTGCCTCAA
131 GCACCCATTATGTTTTGCGCAATCTATTTACATAAAGGTTACCTTTCATCCCATTCGTGCCTCGA
* *
1388 ATTTGAATGTAAATATACCCAAATAATGCTCGGAAAGACGTATTTTCGCGGATAAAAAGAAAAT-
196 ATTTGAATGTAAATATACCCAAATAATGCTCGGGAAGACGTATTTTCGCGGATAAAAATAAAATA
* * ** ** *
1452 AAATATACTCTAAAAATGTCCATATATCCCATGAAGCTTTACTATTTAACAAAATTATAAATTTT
261 AAATA-ACGCTAATAATGTCCATATATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAATTTA
1517 CGATAAATAAAATAATACAAAAAG
325 CGATAAATAAAATAATACAAAAAG
* * ** * * *
1541 AAAAGAAAAAAAACAAAATGAGGAGTAAAACACGAGGACTTCGCAGAAGGTCACCTATCCTAGTA
1 ---A-AAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTA
* * * **
1606 CTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTTTGATGAGATCCGATGCATTAGTGCTAATAT
62 CTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTAT
* * *
1671 GATTGCACCCAATATGTTTTGCGCAATCTATTTACATAAAGGTTACCTTTCATTCCATTCGTGCC
127 GATCGCACCCATTATGTTTTGCGCAATCTATTTACATAAAGGTTACCTTTCATCCCATTCGTGCC
* * * *
1736 TCGAATTTGAATGTAAATATACCAAAACAAGGCTCGGGAAGACGTATTTTCACGGATAAAAATAA
192 TCGAATTTGAATGTAAATATACCCAAATAATGCTCGGGAAGACGTATTTTCGCGGATAAAAATAA
* * * * *
1801 AATAAAATTACGCCAATAATGTCCATATATCCCATAAAGCTTTACTATTTCGGAAAATTGTAAAT
257 AATAAAATAACGCTAATAATGTCCATATATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAAT
1866 TTACGATAAATAAAATAATACAAAAAG
322 TTACGATAAATAAAATAATACAAAAAG
** * ** * * * *
1893 -AAAAAAAACAAAAAGAGGGGTGCAACAAAAAGTTTTCCCAGGAGATCACCCAACCTAATACTTC
1 AAAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTAC
* * * ** * *
1957 TCTCGCCCAAGCACACATAACTGCAGAGTTCTGATGGGATCCGGAACATTAGTGCTAGTATGATT
66 TCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATC
* * * *
2022 GCACCCAATATGTTTCGCGCAATCTATTTACTTAAAGGTTACCTTTCATTCCATTCGTGCCTCGA
131 GCACCCATTATGTTTTGCGCAATCTATTTACATAAAGGTTACCTTTCATCCCATTCGTGCCTCGA
* * * *
2087 ATTTGAATGTAAATATACCCAAAAAAGGCTCGAGAAGTCGTATTTTCGCGGATAAAAATAAAATA
196 ATTTGAATGTAAATATACCCAAATAATGCTCGGGAAGACGTATTTTCGCGGATAAAAATAAAATA
* *
2152 AAATAATGCTAATAATGTCCATATATCCCATGAAGCTTTACTATTTCGTAAAATTGCAAATTTAC
261 AAATAACGCTAATAATGTCCATATATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAATTTAC
*
2217 GATGAATAAAATAATACAAAAAG
326 GATAAATAAAATAATACAAAAAG
* *
2240 AAAAAAAAAACAAAAAGAGGGATGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACAA
1 -AAAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTA
* * * ** * * * *
2305 CTCTCACCCAAGAACGCTTATCAACAGAGTTCTAATGGGATCCTGTGCGTTAGTGCTGGTATGAT
65 CTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGAT
* * *
2370 CGCACTCATTATGTTTTGCGCAATCTATTTACGTAAAGGCTACCTTTCATCCCATTCGTGCCTCG
130 CGCACCCATTATGTTTTGCGCAATCTATTTACATAAAGGTTACCTTTCATCCCATTCGTGCCTCG
* *
2435 AATTTGGATGTAAATATACCCAAATAATGCTCGGGAAGACGTATTTTCACGGATAAAAATAAAAT
195 AATTTGAATGTAAATATACCCAAATAATGCTCGGGAAGACGTATTTTCGCGGATAAAAATAAAAT
2500 AAAA-ATACGCTAATAATGTCC--ATATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAATTT
260 AAAATA-ACGCTAATAATGTCCATATATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAATTT
* *
2562 TCGATAAACAAAATAATACAAAAAG
324 ACGATAAATAAAATAATACAAAAAG
* *
2587 AAAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTTCCAGGACGTCACCCATCCTAGTACTAC
1 AAAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTAC
* * **
2652 TCTCGCCCAAGCACGCTTAGCAGCGGAGTTCTGATGGGATCCGGTGCATTAGCACTGGTATGATC
66 TCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATC
* * * *
2717 GCACCCATTATGTTCTGCGCAATCTATTTATATAAAGGTTACGTTTCATTCCATTCGTGCCTCGA
131 GCACCCATTATGTTTTGCGCAATCTATTTACATAAAGGTTACCTTTCATCCCATTCGTGCCTCGA
* * * * * * *
2782 ATTTGAATGTAAATATA-CCAAAAAATGCTCAGGAACAAGTGTTTTCGCGGGTATAAATAAAATA
196 ATTTGAATGTAAATATACCCAAATAATGCTCGGGAAGACGTATTTTCGCGGATAAAAATAAAATA
*
2846 AAA-ATACGCTAATAATGTCCATATATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAATTTT
261 AAATA-ACGCTAATAATGTCCATATATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAATTTA
*
2910 TGATAAATAAAATAATAC-AAAAG
325 CGATAAATAAAATAATACAAAAAG
* * * *
2933 GAAAAAAAACAAAAAGAGAGGTGCAACACGAGGACTTCCTAGGAGGTCACCCATCCTAGTACAAC
1 AAAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTAC
* * * * * *
2998 TCTCGCCTAAGCATGGTTAACTGCGAAGTTTTGATGGGATCCGATGCATTAGTGCTGGTATGATC
66 TCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATC
* * * * ** * * *
3063 ACACCCATTATGCTCTGCGCATTCTATTTATGTAAA-GATACCTTTCATCCCATTCCTTCCTCGA
131 GCACCCATTATGTTTTGCGCAATCTATTTACATAAAGGTTACCTTTCATCCCATTCGTGCCTCGA
* * *
3127 ATTTGAATGTAAATATACCCAAATAATGCTCGGGAAGAAGTATTTTCACAGATAAAAATAAAATA
196 ATTTGAATGTAAATATACCCAAATAATGCTCGGGAAGACGTATTTTCGCGGATAAAAATAAAATA
* *
3192 AAA-ATACTCTAATAATGTCCATATATCCCATGAAGCTTTACTATTTCGCAAAATTGTAAATTTA
261 AAATA-ACGCTAATAATGTCCATATATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAATTTA
3256 CGATAAATAAAATAATACAAAAAG
325 CGATAAATAAAATAATACAAAAAG
*
3280 -AAAAAAAACAAAAAGAAGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTAC
1 AAAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTAC
* * * * *
3344 TTTCTCCCAAGCACACTTAACTGCGGAGTTCTGATGGGATCCGGTGTATAAGTGCTGGTATGATC
66 TCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATC
* ** * * ** *
3409 GCACTCATTATCCTCTGCGCATTCTATTTAGGTAAAGGTTACCTTTCATCCCATTAGTGCCTCGA
131 GCACCCATTATGTTTTGCGCAATCTATTTACATAAAGGTTACCTTTCATCCCATTCGTGCCTCGA
* ** *
3474 ATTTAAATGTAAATATACCCAAATAATGCTCGGGAAGACGTATTTTCGTAGATAAAAACAAAATA
196 ATTTGAATGTAAATATACCCAAATAATGCTCGGGAAGACGTATTTTCGCGGATAAAAATAAAATA
* * * *
3539 CAAAT-ACGCTAATAAAGTCCATTTATCCCATGAAGTTTTACTATTTCACAAAATT-CTAAATTT
261 -AAATAACGCTAATAATGTCCATATATCCCATGAAGCTTTACTATTTCGCAAAATTGC-AAATTT
* *
3602 GCGATAAATAAAATAATACAAAATG
324 ACGATAAATAAAATAATACAAAAAG
* * *
3627 --AGAAAAA-AAAATGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTA-AAC
1 AAAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTAC
* * ** * * *
3688 TCTCACCCAAGCACGCTTATCAACAGAGTTCTAATGGGATCCGGTGCATTAGTGCTGGAATGATC
66 TCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATC
* * * *
3753 GCACTCATTATGTTTTGCGCAATCTATTTACATAAAGGCTACCTTTCAACCCATTCGTGCCTCAA
131 GCACCCATTATGTTTTGCGCAATCTATTTACATAAAGGTTACCTTTCATCCCATTCGTGCCTCGA
*
3818 ATTTGAATGTAAATATACCCAAATAATGCTCGGGAAGACGTATTTTTGCGGATAAAAATAAAAT-
196 ATTTGAATGTAAATATACCCAAATAATGCTCGGGAAGACGTATTTTCGCGGATAAAAATAAAATA
* *
3882 AAATATACGCTAATAATGTCCATATATCCCATGAAGCTTTACTATTTCGCAAAATTACAAATTCA
261 AAATA-ACGCTAATAATGTCCATATATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAATTTA
* **
3947 CGATATATAAAATAATACAATCAG
325 CGATAAATAAAATAATACAAAAAG
* * * * *
3971 AAAAAAAAAATAAAAAGAGGGGTGCAACATC-AGGACTCCCCAGGAGGTCACTCGTCCTTGTACT
1 -AAAAAAAAACAAAAAGAGGGGTGCAACA-CGAGGACTTCCCAGGAGGTCACCCATCCTAGTACT
* * * * * *
4035 AGTCTCGCCCAAGCACACTTAACTGCGGAGTTCTAATGGGATCCGATGCATTACTGCTAGTATGA
64 ACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGA
* * * * *
4100 TCGCACCCATTATGTTTTCCGCAATCTATTTACATAATGGATACCTTTCAACCCATTTGTGCCTC
129 TCGCACCCATTATGTTTTGCGCAATCTATTTACATAAAGGTTACCTTTCATCCCATTCGTGCCTC
* * * *
4165 GAATTTGAATGTAAATATACCCAAAAAATGCTTGGGAAGACGTATTTTCGTGGATAACAATAAAA
194 GAATTTGAATGTAAATATACCCAAATAATGCTCGGGAAGACGTATTTTCGCGGATAAAAATAAAA
* * *
4230 TAAAA-ATATGCTAATAATGCCCATATATCCCATGAAGCTTTATTATTTCGCAAAATTGCAAATT
259 TAAAATA-ACGCTAATAATGTCCATATATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAATT
* *
4294 TACAATAAATAAAATAATACAAAGAG
323 TACGATAAATAAAATAATACAAAAAG
* * * *
4320 AAAAAAAAGCAAAAAGAAGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTTGTACTAG
1 AAAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTAC
* * * * * * * *
4385 TCTCGCCCAAGCACGCATAATTGCTGAGTTCTAATGTGATCCGATGCATTACTGCTAGTATGATC
66 TCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATC
4450 GCACCCATTATG
131 GCACCCATTATG
Statistics
Matches: 2575, Mismatches: 319, Indels: 51
0.87 0.11 0.02
Matches are distributed among these distances:
342 4 0.00
344 241 0.09
345 149 0.06
346 610 0.24
347 598 0.23
348 177 0.07
349 490 0.19
350 3 0.00
351 1 0.00
352 298 0.12
353 4 0.00
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.27
Consensus pattern (348 bp):
AAAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTAC
TCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATC
GCACCCATTATGTTTTGCGCAATCTATTTACATAAAGGTTACCTTTCATCCCATTCGTGCCTCGA
ATTTGAATGTAAATATACCCAAATAATGCTCGGGAAGACGTATTTTCGCGGATAAAAATAAAATA
AAATAACGCTAATAATGTCCATATATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAATTTAC
GATAAATAAAATAATACAAAAAG
Found at i:3309 original size:692 final size:693
Alignment explanation
Indices: 3--4461 Score: 5641
Period size: 692 Copynumber: 6.4 Consensus size: 693
1 TT
*
3 TTTTCGCGGATATAAATAAAATAAAAATACGCTAATAATGTCCATATATCCCATGAAGCTTTACT
1 TTTTCGCGGATAAAAATAAAATAAAAATACGCTAATAATGTCCATATATCCCATGAAGCTTTACT
* * *
68 ATTTCTCAAAATTGCAAATTTTCGATAAATAAAATAATACAAAAGGAAAAAACACAAAAAGAGAG
66 ATTTCGCAAAATTGCAAATTTACGATAAATAAAATAATACAAAAGGAAAAAAAACAAAAAGAG-G
* * *
133 GTGCAACACGAGGACTTCCTAGGAGGTCACCCATCCTAGTACAACTCTCGCCTAAGCATGCTTAA
130 GTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACAACTCTCGCCCAAGCACGCTTAA
** * * * * * *
198 CTGCGGGGTTCCGATGCGATCCGGTGCATTAGTGCTGGTCTGATCGCACCAATTGTGTTTTGCGC
195 CTGCGAAGTTCTGATGGGATCCGATGCATTAGTGCTGGTATGATCGCACCCATTATGTTTTGCGC
* * *
263 AATCTATTTATATAAAGGTTACGTTTCATCCAATTCGTGCCTCGAATTTGAATGTAAATATACCC
260 AATCTATTTACATAAAGGTTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAAATATACCC
* * * *
328 AAAAAATGCTCGGGAACAAGTATTTTCGCGGATAAAAATAAAATAAAAATATGCTAATAATGTCC
325 AAATAATGCTCGGGAAGAAGTATTTTCACGGATAAAAATAAAATAAAAATACGCTAATAATGTCC
* *
393 ATATATCCCATGAAGCTTTACTATTTCTCAAAATTGGAAATTTACGATAAATAAAATAATAC-AA
390 ATATATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAATTTACGATAAATAAAATAATACAAA
* * * *
457 AAG-AAAAATA-AAAAAGATGGGT-CTAACACGAGAACTTCCCAGAAGGTCACCCATCCTAGTAC
455 AAGAAAAAAAACAAAAAGAGGGGTGC-AACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTAC
* ** * * * * * * * *
519 TTCTCTTACCTAAGCACGCTTAACTACGGGGTTCTGATGCGATCCGGTCCATTAGTGATGGTATA
519 TACTCTCGCCCAAGCACACTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATG
* * * ** *
584 ATCGCACCAATTATGTTCTGCGCAATCTATTTACATAGAGGCTACCTCCCATCCTATTCGTGCCT
584 ATCGCACCCATTATGTTCTGCGCAATCTATTTACATAAAGGTTACCTTTCATCCCATTCGTGCCT
*
649 CGAATTTGAATGTAAATATACCCAAATAATGCTCGGGAAGACGTA
649 CGAATTTGAATGTAAATATACCCAAAAAATGCTCGGGAAGACGTA
*
694 TTTTCGCGGATAAAAATAAAATAAAAATACGCTAATAATGTCCATATATCCCATGAAGCTTAACT
1 TTTTCGCGGATAAAAATAAAATAAAAATACGCTAATAATGTCCATATATCCCATGAAGCTTTACT
* *
759 ATTTCGCCAAATTGCAAATTTACGATAAATAAAATAATACAAAAAGAAAAAAAAACAAAAAGATG
66 ATTTCGCAAAATTGCAAATTTACGATAAATAAAATAATAC-AAAAGGAAAAAAAACAAAAAGA-G
* * * * *
824 GGTTCAACACGAGGACTTCCCAGGAGGTCACCGATCCTAGTACTACTCTCACCTAAGCACGCTTA
129 GGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACAACTCTCGCCCAAGCACGCTTA
* * * * * *
889 ATTGCGGAGTTCTGTTGTGATCC-AGTGCATTAGTGCTGGTACGATCGCACCCATTATGTTTCGC
194 ACTGCGAAGTTCTGATGGGATCCGA-TGCATTAGTGCTGGTATGATCGCACCCATTATGTTTTGC
* *
953 GCAATCGATTTACGTAAAGGTTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAAATATAC
258 GCAATCTATTTACATAAAGGTTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAAATATAC
*
1018 CCAAATAATGCTCGGGAAGAAGTATTTTAACGGATAAAAATAAAATAAAAATACGCTAATAATGT
323 CCAAATAATGCTCGGGAAGAAGTATTTTCACGGATAAAAATAAAATAAAAATACGCTAATAATGT
1083 CCATATATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAATTTACGATAAATAAAANNNNNNN
388 CCATATATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAATTTACGATAAATAAAA-------
************
1148 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAACAAAAAGAGGG
446 -------------------------------TAATACAAAAAGAAAA---AAAACAAAAAGAGGG
* * * * *
1213 GTGCAACAGGAGGACTTCCCAGGAGGTGACCCATCCTAGTACTACTCTCACCCAAGCACGCTTCA
477 GTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACACTTAA
* * * * *
1278 CTGCGAAGTTTTGATGGGATCCGGTGCATTAATGCTGGTATGATCACACCCATTATGCTCTGCGC
542 CTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCATTATGTTCTGCGC
* * * * *
1343 ATTCTATTTACGTAAAGATTAACTTTCATCCCATTCGTGCCTCAAATTTGAATGTAAATATACCC
607 AATCTATTTACATAAAGGTTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAAATATACCC
* *
1408 AAATAATGCTCGGAAAGACGTA
672 AAAAAATGCTCGGGAAGACGTA
* * * *
1430 TTTTCGCGGATAAAAAGAAAATAAATATACTCTAAAAATGTCCATATATCCCATGAAGCTTTACT
1 TTTTCGCGGATAAAAATAAAATAAAAATACGCTAATAATGTCCATATATCCCATGAAGCTTTACT
** ** * *
1495 ATTTAACAAAATTATAAATTTTCGATAAATAAAATAATACAAAAAGAAAAGAAAAAAAACAAAAT
66 ATTTCGCAAAATTGCAAATTTACGATAAATAAAATAATAC-AAAAG----GAAAAAAAACAAAAA
** * * * *
1560 GAGGAGTAAAACACGAGGACTTCGCAGAAGGTCACCTATCCTAGTACTACTCTCGCCCAAGCACG
126 GAGG-GTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACAACTCTCGCCCAAGCACG
* * * ** * *
1625 CTTAACTGCGGAGTTTTGATGAGATCCGATGCATTAGTGCTAATATGATTGCACCCAATATGTTT
190 CTTAACTGCGAAGTTCTGATGGGATCCGATGCATTAGTGCTGGTATGATCGCACCCATTATGTTT
*
1690 TGCGCAATCTATTTACATAAAGGTTACCTTTCATTCCATTCGTGCCTCGAATTTGAATGTAAATA
255 TGCGCAATCTATTTACATAAAGGTTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAAATA
* * * * * *
1755 TACCAAAACAAGGCTCGGGAAGACGTATTTTCACGGATAAAAATAAAATAAAATTACGCCAATAA
320 TACCCAAATAATGCTCGGGAAGAAGTATTTTCACGGATAAAAATAAAATAAAAATACGCTAATAA
* * *
1820 TGTCCATATATCCCATAAAGCTTTACTATTTCGGAAAATTGTAAATTTACGATAAATAAAATAAT
385 TGTCCATATATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAATTTACGATAAATAAAATAAT
** * ** * *
1885 ACAAAAAGAAAAAAAACAAAAAGAGGGGTGCAACAAAAAGTTTTCCCAGGAGATCACCCAACCTA
450 ACAAAAAGAAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTA
* * * * ** *
1950 ATACTTCTCTCGCCCAAGCACACATAACTGCAGAGTTCTGATGGGATCCGGAACATTAGTGCTAG
515 GTACTACTCTCGCCCAAGCACACTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGG
* * * *
2015 TATGATTGCACCCAATATGTT-TCGCGCAATCTATTTACTTAAAGGTTACCTTTCATTCCATTCG
580 TATGATCGCACCCATTATGTTCT-GCGCAATCTATTTACATAAAGGTTACCTTTCATCCCATTCG
* * *
2079 TGCCTCGAATTTGAATGTAAATATACCCAAAAAAGGCTCGAGAAGTCGTA
644 TGCCTCGAATTTGAATGTAAATATACCCAAAAAATGCTCGGGAAGACGTA
*
2129 TTTTCGCGGATAAAAATAAAAT-AAAATAATGCTAATAATGTCCATATATCCCATGAAGCTTTAC
1 TTTTCGCGGATAAAAATAAAATAAAAAT-ACGCTAATAATGTCCATATATCCCATGAAGCTTTAC
* * *
2193 TATTTCGTAAAATTGCAAATTTACGATGAATAAAATAATACAAAAAGAAAAAAAAAACAAAAAGA
65 TATTTCGCAAAATTGCAAATTTACGATAAATAAAATAATAC-AAAAG-GAAAAAAAACAAAAAGA
* *
2258 GGGATGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACAACTCTCACCCAAGAACGCT
128 GGG-TGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACAACTCTCGCCCAAGCACGCT
* ** * * *
2323 TATCAAC-AGAGTTCTAATGGGATCCTG-TGCGTTAGTGCTGGTATGATCGCACTCATTATGTTT
192 TAACTGCGA-AGTTCTGATGGGATCC-GATGCATTAGTGCTGGTATGATCGCACCCATTATGTTT
* * *
2386 TGCGCAATCTATTTACGTAAAGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGGATGTAAATA
255 TGCGCAATCTATTTACATAAAGGTTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAAATA
*
2451 TACCCAAATAATGCTCGGGAAGACGTATTTTCACGGATAAAAATAAAATAAAAATACGCTAATAA
320 TACCCAAATAATGCTCGGGAAGAAGTATTTTCACGGATAAAAATAAAATAAAAATACGCTAATAA
* *
2516 TGTCC--ATATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAATTTTCGATAAACAAAATAAT
385 TGTCCATATATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAATTTACGATAAATAAAATAAT
* *
2579 ACAAAAAGAAAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTTCCAGGACGTCACCCATCCT
450 ACAAAAAG-AAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCT
* * * **
2644 AGTACTACTCTCGCCCAAGCACGCTTAGCAGCGGAGTTCTGATGGGATCCGGTGCATTAGCACTG
514 AGTACTACTCTCGCCCAAGCACACTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTG
* * *
2709 GTATGATCGCACCCATTATGTTCTGCGCAATCTATTTATATAAAGGTTACGTTTCATTCCATTCG
579 GTATGATCGCACCCATTATGTTCTGCGCAATCTATTTACATAAAGGTTACCTTTCATCCCATTCG
* * * *
2774 TGCCTCGAATTTGAATGTAAATATA-CCAAAAAATGCTCAGGAACAAGTG
644 TGCCTCGAATTTGAATGTAAATATACCCAAAAAATGCTCGGGAAGACGTA
* *
2823 TTTTCGCGGGTATAAATAAAATAAAAATACGCTAATAATGTCCATATATCCCATGAAGCTTTACT
1 TTTTCGCGGATAAAAATAAAATAAAAATACGCTAATAATGTCCATATATCCCATGAAGCTTTACT
**
2888 ATTTCGCAAAATTGCAAATTTTTGATAAATAAAATAATACAAAAGGAAAAAAAACAAAAAGAGAG
66 ATTTCGCAAAATTGCAAATTTACGATAAATAAAATAATACAAAAGGAAAAAAAACAAAAAGAG-G
* * * *
2953 GTGCAACACGAGGACTTCCTAGGAGGTCACCCATCCTAGTACAACTCTCGCCTAAGCATGGTTAA
130 GTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACAACTCTCGCCCAAGCACGCTTAA
* * * *
3018 CTGCGAAGTTTTGATGGGATCCGATGCATTAGTGCTGGTATGATCACACCCATTATGCTCTGCGC
195 CTGCGAAGTTCTGATGGGATCCGATGCATTAGTGCTGGTATGATCGCACCCATTATGTTTTGCGC
* ** * * *
3083 ATTCTATTTATGTAAA-GATACCTTTCATCCCATTCCTTCCTCGAATTTGAATGTAAATATACCC
260 AATCTATTTACATAAAGGTTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAAATATACCC
* *
3147 AAATAATGCTCGGGAAGAAGTATTTTCACAGATAAAAATAAAATAAAAATACTCTAATAATGTCC
325 AAATAATGCTCGGGAAGAAGTATTTTCACGGATAAAAATAAAATAAAAATACGCTAATAATGTCC
*
3212 ATATATCCCATGAAGCTTTACTATTTCGCAAAATTGTAAATTTACGATAAATAAAATAATACAAA
390 ATATATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAATTTACGATAAATAAAATAATACAAA
*
3277 AAGAAAAAAAACAAAAAGAAGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACT
455 AAGAAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACT
* * * *
3342 ACTTTCTCCCAAGCACACTTAACTGCGGAGTTCTGATGGGATCCGGTGTATAAGTGCTGGTATGA
520 ACTCTCGCCCAAGCACACTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGA
* ** * ** *
3407 TCGCACTCATTATCCTCTGCGCATTCTATTTAGGTAAAGGTTACCTTTCATCCCATTAGTGCCTC
585 TCGCACCCATTATGTTCTGCGCAATCTATTTACATAAAGGTTACCTTTCATCCCATTCGTGCCTC
* *
3472 GAATTTAAATGTAAATATACCCAAATAATGCTCGGGAAGACGTA
650 GAATTTGAATGTAAATATACCCAAAAAATGCTCGGGAAGACGTA
** * * * * *
3516 TTTTCGTAGATAAAAACAAAATACAAATACGCTAATAAAGTCCATTTATCCCATGAAGTTTTACT
1 TTTTCGCGGATAAAAATAAAATAAAAATACGCTAATAATGTCCATATATCCCATGAAGCTTTACT
* * * * *
3581 ATTTCACAAAATT-CTAAATTTGCGATAAATAAAATAATACAAAATG-AGAAAAA-AAAATGAGG
66 ATTTCGCAAAATTGC-AAATTTACGATAAATAAAATAATACAAAAGGAAAAAAAACAAAAAGA-G
*
3643 GGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTA-AACTCTCACCCAAGCACGCTTA
129 GGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACAACTCTCGCCCAAGCACGCTTA
* ** * * * *
3707 TCAAC-AGAGTTCTAATGGGATCCGGTGCATTAGTGCTGGAATGATCGCACTCATTATGTTTTGC
194 ACTGCGA-AGTTCTGATGGGATCCGATGCATTAGTGCTGGTATGATCGCACCCATTATGTTTTGC
* * *
3771 GCAATCTATTTACATAAAGGCTACCTTTCAACCCATTCGTGCCTCAAATTTGAATGTAAATATAC
258 GCAATCTATTTACATAAAGGTTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAAATATAC
* ** *
3836 CCAAATAATGCTCGGGAAGACGTATTTTTGCGGATAAAAATAAAATAAATATACGCTAATAATGT
323 CCAAATAATGCTCGGGAAGAAGTATTTTCACGGATAAAAATAAAATAAAAATACGCTAATAATGT
* * *
3901 CCATATATCCCATGAAGCTTTACTATTTCGCAAAATTACAAATTCACGATATATAAAATAATACA
388 CCATATATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAATTTACGATAAATAAAATAATACA
* * * *
3966 ATCAGAA-AAAAAAAATAAAAAGAGGGGTGCAACATC-AGGACTCCCCAGGAGGTCACTCGTCCT
453 A--A-AAGAAAAAAAACAAAAAGAGGGGTGCAACA-CGAGGACTTCCCAGGAGGTCACCCATCCT
* * * * * *
4029 TGTACTAGTCTCGCCCAAGCACACTTAACTGCGGAGTTCTAATGGGATCCGATGCATTACTGCTA
514 AGTACTACTCTCGCCCAAGCACACTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTG
* * * * * *
4094 GTATGATCGCACCCATTATGTTTTCCGCAATCTATTTACATAATGGATACCTTTCAACCCATTTG
579 GTATGATCGCACCCATTATGTTCTGCGCAATCTATTTACATAAAGGTTACCTTTCATCCCATTCG
*
4159 TGCCTCGAATTTGAATGTAAATATACCCAAAAAATGCTTGGGAAGACGTA
644 TGCCTCGAATTTGAATGTAAATATACCCAAAAAATGCTCGGGAAGACGTA
* * * * *
4209 TTTTCGTGGATAACAATAAAATAAAAATATGCTAATAATGCCCATATATCCCATGAAGCTTTATT
1 TTTTCGCGGATAAAAATAAAATAAAAATACGCTAATAATGTCCATATATCCCATGAAGCTTTACT
*
4274 ATTTCGCAAAATTGCAAATTTACAATAAATAAAATAATAC-AAAGAGAAAAAAAAGCAAAAAGAA
66 ATTTCGCAAAATTGCAAATTTACGATAAATAAAATAATACAAAAG-GAAAAAAAA-CAAAAAG-A
* * * *
4338 GGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTTGTACTAGTCTCGCCCAAGCACGCAT
128 GGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACAACTCTCGCCCAAGCACGCTT
* * * * *
4403 AATTGCTG-AGTTCTAATGTGATCCGATGCATTACTGCTAGTATGATCGCACCCATTATG
193 AACTGC-GAAGTTCTGATGGGATCCGATGCATTAGTGCTGGTATGATCGCACCCATTATG
Statistics
Matches: 3257, Mismatches: 426, Indels: 164
0.85 0.11 0.04
Matches are distributed among these distances:
689 1 0.00
690 84 0.03
691 416 0.13
692 647 0.20
693 483 0.15
694 180 0.06
695 189 0.06
696 292 0.09
697 66 0.02
698 5 0.00
699 288 0.09
702 4 0.00
732 3 0.00
735 3 0.00
736 293 0.09
737 1 0.00
739 2 0.00
740 299 0.09
741 1 0.00
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.27
Consensus pattern (693 bp):
TTTTCGCGGATAAAAATAAAATAAAAATACGCTAATAATGTCCATATATCCCATGAAGCTTTACT
ATTTCGCAAAATTGCAAATTTACGATAAATAAAATAATACAAAAGGAAAAAAAACAAAAAGAGGG
TGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACAACTCTCGCCCAAGCACGCTTAAC
TGCGAAGTTCTGATGGGATCCGATGCATTAGTGCTGGTATGATCGCACCCATTATGTTTTGCGCA
ATCTATTTACATAAAGGTTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAAATATACCCA
AATAATGCTCGGGAAGAAGTATTTTCACGGATAAAAATAAAATAAAAATACGCTAATAATGTCCA
TATATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAATTTACGATAAATAAAATAATACAAAA
AGAAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTA
CTCTCGCCCAAGCACACTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGAT
CGCACCCATTATGTTCTGCGCAATCTATTTACATAAAGGTTACCTTTCATCCCATTCGTGCCTCG
AATTTGAATGTAAATATACCCAAAAAATGCTCGGGAAGACGTA
Done.