Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010706.1 Kokia drynarioides strain JFW-HI SEQ_125655, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 710

Length: 1184
ACGTcount: A:0.26, C:0.15, G:0.13, T:0.37

Warning! 108 characters in sequence are not A, C, G, or T


Found at i:818 original size:214 final size:216

Alignment explanation


    Indices: 598--1184  Score: 632
    Period size: 216  Copynumber: 2.7  Consensus size: 216

        588 ACTTTTACGG

                            * *  *                                           
        598 GTTCTTTTATAACTTCTGCTCGTTAAAGTA-T-AAGACGATCCATTCC-TTCAGGCAATTTTTCG
          1 GTTCTTTTATAACTTCGGATCATTAAAGTATTCAAGACGATCCATTCCTTTCA-GCAATTTTTCG

                  ** *            *                                      *   
        660 AACATTTGATGCTCGAGAAATCGCATCATTTCGTCTAAATCT-TTTGTCATTTTGTAAACAGCAT
         65 AACATTCCACGCTCGAGAAATCACATCATTTCGTCTAAAT-TGTTTGTCATTTTGTAAACAACAT

                               *        *      *                             
        724 TTGGTCTTT-GAATTAAAATCTTATTTATGTGACAGTTATTTCTCTCTTGAATCTTGGACAAACT
        129 TTGGTCTTTGGAA-TAAAAACTTATTTACGTGACAATTATTTCTCTCTTGAATCTTGGACAAACT

                                    
        788 TCTGATCTTATCAAATTTTTATGA
        193 TCTGATCTTATCAAATTTTTATGA

                                                                          *  
        812 GTTCTTTTATAACTTCGGATCATTAAAGTATTCAAGACGATCCATTCCTTTCAGCAATTTTTTGA
          1 GTTCTTTTATAACTTCGGATCATTAAAGTATTCAAGACGATCCATTCCTTTCAGCAATTTTTCGA

                          *               *      *                       *   
        877 ACATTCCACGCTCGGGAAATCACATCATTTGGTCTAAGTTGTTTGTCATTTTGTAAACAACTTTT
         66 ACATTCCACGCTCGAGAAATCACATCATTTCGTCTAAATTGTTTGTCATTTTGTAAACAACATTT

                                *         *    *            *    *  **      *
        942 GGTCTTTGGAATAAAAACTTGTTTACGTGAGAATTGTTTCTCTCTTGATTCTTTGATGAACTTCC
        131 GGTCTTTGGAATAAAAACTTATTTACGTGACAATTATTTCTCTCTTGAATCTTGGACAAACTTCT

            * *   *    **     ** 
       1007 AAACTTGTCAAGCTTTTACAA
        196 GATCTTATCAAATTTTTATGA

            *                 *  **                   *        *  *  *     * 
       1028 TTTCTTTTATAACTTCGGTTCCGTAAAGTATTCAAGACGATCTATTCCTTTGAGAAAATTTTCAA
          1 GTTCTTTTATAACTTCGGATCATTAAAGTATTCAAGACGATCCATTCCTTTCAGCAATTTTTCGA

                    * *          *        *  *     *    *               **   
       1093 ACATTCCATGATC-AG-AA-CGCATCATTTGGTTTAAATAGTTTTTCATTTTGTAAACAAGTTTT
         66 ACATTCCACGCTCGAGAAATCACATCATTTCGTCTAAATTGTTTGTCATTTTGTAAACAACATTT

            *  *                          
       1155 TGTGTTTGGAATAAAAACTTATTTACGTGA
        131 GGTCTTTGGAATAAAAACTTATTTACGTGA


Statistics
Matches: 315,  Mismatches: 53, Indels: 11
        0.83            0.14        0.03

Matches are distributed among these distances:
 213   66  0.21
 214   29  0.09
 215    3  0.01
 216  210  0.67
 217    7  0.02

ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41


Consensus pattern (216 bp):   
GTTCTTTTATAACTTCGGATCATTAAAGTATTCAAGACGATCCATTCCTTTCAGCAATTTTTCGA
ACATTCCACGCTCGAGAAATCACATCATTTCGTCTAAATTGTTTGTCATTTTGTAAACAACATTT
GGTCTTTGGAATAAAAACTTATTTACGTGACAATTATTTCTCTCTTGAATCTTGGACAAACTTCT
GATCTTATCAAATTTTTATGA

Done.