Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010712.1 Kokia drynarioides strain JFW-HI SEQ_125662, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 633

Length: 1056
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32


Found at i:368 original size:15 final size:15

Alignment explanation


    Indices: 344--378  Score: 52
    Period size: 15  Copynumber: 2.3  Consensus size: 15

        334 GTTATATTTT

                 *     *   
        344 AATAATAATAATAAG
          1 AATAAGAATAAAAAG

                           
        359 AATAAGAATAAAAAG
          1 AATAAGAATAAAAAG

                 
        374 AATAA
          1 AATAA

        379 AGAAATTCTG


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  15   18  1.00

ACGTcount: A:0.71, C:0.00, G:0.09, T:0.20


Consensus pattern (15 bp):   
AATAAGAATAAAAAG
Done.