Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001072.1 Kokia drynarioides strain JFW-HI SEQ_112326, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 34951
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.33


Found at i:9241 original size:19 final size:19

Alignment explanation


    Indices: 9217--9255  Score: 55
    Period size: 18  Copynumber: 2.1  Consensus size: 19

       9207 GCAAGTGTGA

                                
       9217 TTTTTTATT-TTA-CTTGAG
          1 TTTTTT-TTGTTATCTTGAG

                               
       9235 TTTTTTTTGTTATCTTGAG
          1 TTTTTTTTGTTATCTTGAG

              
       9254 TT
          1 TT

       9256 ATGGAATGCT


Statistics
Matches: 19,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  17    2  0.11
  18    9  0.47
  19    8  0.42

ACGTcount: A:0.13, C:0.05, G:0.13, T:0.69


Consensus pattern (19 bp):   
TTTTTTTTGTTATCTTGAG

Found at i:14577 original size:55 final size:55

Alignment explanation


    Indices: 14517--14627  Score: 222
    Period size: 55  Copynumber: 2.0  Consensus size: 55

      14507 TTCCTTGTAA

                                                                   
      14517 TGCCTTTTAATCTAACTAACACTCCGACCGCCTTCATGGACTTAATGAATCGTGT
          1 TGCCTTTTAATCTAACTAACACTCCGACCGCCTTCATGGACTTAATGAATCGTGT

                                                                   
      14572 TGCCTTTTAATCTAACTAACACTCCGACCGCCTTCATGGACTTAATGAATCGTGT
          1 TGCCTTTTAATCTAACTAACACTCCGACCGCCTTCATGGACTTAATGAATCGTGT

             
      14627 T
          1 T

      14628 TTCTAAACCT


Statistics
Matches: 56,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  55   56  1.00

ACGTcount: A:0.25, C:0.27, G:0.14, T:0.33


Consensus pattern (55 bp):   
TGCCTTTTAATCTAACTAACACTCCGACCGCCTTCATGGACTTAATGAATCGTGT

Found at i:24793 original size:13 final size:13

Alignment explanation


    Indices: 24775--24800  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

      24765 ATTTGTTTAA

                         
      24775 AAATTCTTTTGAT
          1 AAATTCTTTTGAT

                         
      24788 AAATTCTTTTGAT
          1 AAATTCTTTTGAT

      24801 TTTAAGTTAT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.31, C:0.08, G:0.08, T:0.54


Consensus pattern (13 bp):   
AAATTCTTTTGAT
Done.