Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01010720.1 Kokia drynarioides strain JFW-HI SEQ_125671, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 48951
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34
Found at i:14276 original size:19 final size:18
Alignment explanation
Indices: 14244--14279 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
14234 ATATATAGTA
*
14244 ACAATAAAAGAATTTAAT
1 ACAATAAAAAAATTTAAT
14262 ACAATTAAAAAAATTTAA
1 ACAA-TAAAAAAATTTAA
14280 ATGGGTTGAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.64, C:0.06, G:0.03, T:0.28
Consensus pattern (18 bp):
ACAATAAAAAAATTTAAT
Found at i:16728 original size:19 final size:20
Alignment explanation
Indices: 16704--16761 Score: 68
Period size: 19 Copynumber: 3.0 Consensus size: 20
16694 TGAATCGTTT
*
16704 TAATCAAAATATCA-CAAAA
1 TAATCAAAATATAATCAAAA
*
16723 TAATC-AAGTATAATCAAAA
1 TAATCAAAATATAATCAAAA
*
16742 TAATC-AAGTATAATCAAAA
1 TAATCAAAATATAATCAAAA
16761 T
1 T
16762 CAAGACTTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
18 6 0.17
19 30 0.83
ACGTcount: A:0.59, C:0.12, G:0.03, T:0.26
Consensus pattern (20 bp):
TAATCAAAATATAATCAAAA
Found at i:16735 original size:10 final size:10
Alignment explanation
Indices: 16722--16758 Score: 58
Period size: 10 Copynumber: 3.8 Consensus size: 10
16712 ATATCACAAA
16722 ATAATCAAGT
1 ATAATCAAGT
*
16732 ATAATCAA-A
1 ATAATCAAGT
16741 ATAATCAAGT
1 ATAATCAAGT
16751 ATAATCAA
1 ATAATCAA
16759 AATCAAGACT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
9 8 0.33
10 16 0.67
ACGTcount: A:0.57, C:0.11, G:0.05, T:0.27
Consensus pattern (10 bp):
ATAATCAAGT
Found at i:16765 original size:16 final size:18
Alignment explanation
Indices: 16720--16759 Score: 71
Period size: 19 Copynumber: 2.2 Consensus size: 18
16710 AAATATCACA
16720 AAATAATCAAGTATAATC
1 AAATAATCAAGTATAATC
16738 AAAATAATCAAGTATAATC
1 -AAATAATCAAGTATAATC
16757 AAA
1 AAA
16760 ATCAAGACTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 3 0.14
19 18 0.86
ACGTcount: A:0.60, C:0.10, G:0.05, T:0.25
Consensus pattern (18 bp):
AAATAATCAAGTATAATC
Found at i:17599 original size:36 final size:36
Alignment explanation
Indices: 17558--17628 Score: 142
Period size: 36 Copynumber: 2.0 Consensus size: 36
17548 CCAATGCCTC
17558 ATCGGATGGTTCGAAGCAATAAAGTGACACCCAGTA
1 ATCGGATGGTTCGAAGCAATAAAGTGACACCCAGTA
17594 ATCGGATGGTTCGAAGCAATAAAGTGACACCCAGT
1 ATCGGATGGTTCGAAGCAATAAAGTGACACCCAGT
17629 GTCTCATCGG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (36 bp):
ATCGGATGGTTCGAAGCAATAAAGTGACACCCAGTA
Found at i:23508 original size:18 final size:18
Alignment explanation
Indices: 23482--23516 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
23472 GAGTTAAACG
* *
23482 AATCGAGTTGTTCGAGTT
1 AATCAAGTTATTCGAGTT
23500 AATCAAGTTATTCGAGT
1 AATCAAGTTATTCGAGT
23517 CAACTCGATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.11, G:0.23, T:0.37
Consensus pattern (18 bp):
AATCAAGTTATTCGAGTT
Found at i:23833 original size:19 final size:20
Alignment explanation
Indices: 23793--23832 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
23783 CAAAAACACT
*
23793 CAAAATTTTTTATTTTTCCC
1 CAAAATTTTTTATCTTTCCC
23813 CAAAA-TTTTTACTCTTTCCC
1 CAAAATTTTTTA-TCTTTCCC
23833 ACTTTCTCTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.25, C:0.25, G:0.00, T:0.50
Consensus pattern (20 bp):
CAAAATTTTTTATCTTTCCC
Found at i:28170 original size:97 final size:97
Alignment explanation
Indices: 28050--28247 Score: 317
Period size: 97 Copynumber: 2.0 Consensus size: 97
28040 GTAAAATTTG
*
28050 GTACATGTACTTTTATAAAATATTTAATGTGATAAATG-TACTTTGAAAACTTTAAATGCGGTAC
1 GTACATGTACTTTTATAAAATATTTAATGTGAT-AATGATACTTTGAAAACGTTAAATGCGGTAC
*
28114 ATAAACTATGAATTTGTTTATTATTTGGTACTT
65 ATAAACTATGAATTTGTTTATTACTTGGTACTT
* * * *
28147 GTACATGTGCTTTTATAAAATATTTAATGTGATATTGATACTTTGAAAACGTTAAATGTGGTACC
1 GTACATGTACTTTTATAAAATATTTAATGTGATAATGATACTTTGAAAACGTTAAATGCGGTACA
*
28212 TAAAGTATGAATTTGTTTATTACTTGGTACTT
66 TAAACTATGAATTTGTTTATTACTTGGTACTT
28244 GTAC
1 GTAC
28248 TTTCATAAAA
Statistics
Matches: 93, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
96 3 0.03
97 90 0.97
ACGTcount: A:0.33, C:0.09, G:0.15, T:0.43
Consensus pattern (97 bp):
GTACATGTACTTTTATAAAATATTTAATGTGATAATGATACTTTGAAAACGTTAAATGCGGTACA
TAAACTATGAATTTGTTTATTACTTGGTACTT
Found at i:28303 original size:91 final size:91
Alignment explanation
Indices: 28184--28392 Score: 260
Period size: 91 Copynumber: 2.3 Consensus size: 91
28174 TGTGATATTG
* * * * * *
28184 ATACTTTGAAAACGTTAAATGTGGTACCTAAAGTATGAATTTGTTTATTACTTGGTACTTGTACT
1 ATACTTTGAAAATGTTCAATGTGGTACCTAAAGTATCAATTTATGTATCACTTGGTACTTGTACT
*
28249 TTCATAAAA-GATCCAATGTAGTA-TCT
66 TTCATAAAATG-TCCAATATAGTACT-T
* * *
28275 ATACTTTGAAAATGTTCAATGTGGTACCTGAATTATCAATTTATGTATCATTTGGTACTTGTACT
1 ATACTTTGAAAATGTTCAATGTGGTACCTAAAGTATCAATTTATGTATCACTTGGTACTTGTACT
*
28340 TTCATAAAATGTCCAATATGGTACTT
66 TTCATAAAATGTCCAATATAGTACTT
* * *
28366 ATCCTTTGAAAATGTTCATTATGGTAC
1 ATACTTTGAAAATGTTCAATGTGGTAC
28393 TTGAACTATC
Statistics
Matches: 102, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
91 100 0.98
92 2 0.02
ACGTcount: A:0.32, C:0.13, G:0.15, T:0.41
Consensus pattern (91 bp):
ATACTTTGAAAATGTTCAATGTGGTACCTAAAGTATCAATTTATGTATCACTTGGTACTTGTACT
TTCATAAAATGTCCAATATAGTACTT
Found at i:28362 original size:31 final size:29
Alignment explanation
Indices: 28327--28395 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
28317 ATGTATCATT
*
28327 TGGTACTTGTACTTTCATAAAATGTCCAATA
1 TGGTACTTGTACTTT--GAAAATGTCCAATA
* * * *
28358 TGGTACTTATCCTTTGAAAATGTTCATTA
1 TGGTACTTGTACTTTGAAAATGTCCAATA
28387 TGGTACTTG
1 TGGTACTTG
28396 AACTATCAAT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
29 19 0.59
31 13 0.41
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (29 bp):
TGGTACTTGTACTTTGAAAATGTCCAATA
Found at i:29391 original size:29 final size:29
Alignment explanation
Indices: 29358--29419 Score: 97
Period size: 29 Copynumber: 2.1 Consensus size: 29
29348 ATCTGTTGAC
* *
29358 ATTTGTTTGACCTGTTAACACTGTTTGGG
1 ATTTGTTTGACCTGTTAACACTATTTAGG
*
29387 ATTTGTTTGATCTGTTAACACTATTTAGG
1 ATTTGTTTGACCTGTTAACACTATTTAGG
29416 ATTT
1 ATTT
29420 AGGGTTAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.21, C:0.11, G:0.19, T:0.48
Consensus pattern (29 bp):
ATTTGTTTGACCTGTTAACACTATTTAGG
Found at i:29537 original size:11 final size:13
Alignment explanation
Indices: 29513--29542 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
29503 TTATAGATAC
29513 ATATGCTCTATAT
1 ATATGCTCTATAT
*
29526 ATATGCTTTATAT
1 ATATGCTCTATAT
29539 ATAT
1 ATAT
29543 TGCCCAGGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.33, C:0.10, G:0.07, T:0.50
Consensus pattern (13 bp):
ATATGCTCTATAT
Found at i:31650 original size:11 final size:11
Alignment explanation
Indices: 31610--31665 Score: 51
Period size: 11 Copynumber: 5.0 Consensus size: 11
31600 GCTGTATTTC
*
31610 GTTGGCTTGAT
1 GTTGGCTTTAT
* *
31621 GATGACTTTAT
1 GTTGGCTTTAT
31632 GTCT-GCTTTAT
1 GT-TGGCTTTAT
31643 GTTGGCTTTAAT
1 GTTGGCTTT-AT
*
31655 GTTGGATTTAT
1 GTTGGCTTTAT
31666 ATTGAATGAT
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
10 1 0.03
11 24 0.67
12 11 0.31
ACGTcount: A:0.16, C:0.09, G:0.25, T:0.50
Consensus pattern (11 bp):
GTTGGCTTTAT
Found at i:32559 original size:12 final size:12
Alignment explanation
Indices: 32532--32566 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
32522 ATTGTTGTTC
*
32532 TGAACTGTTT-T
1 TGAACTTTTTGT
32543 TGAACTTTTTGT
1 TGAACTTTTTGT
32555 TGAACTTTTTGT
1 TGAACTTTTTGT
32567 AAAGTTTCCT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 9 0.41
12 13 0.59
ACGTcount: A:0.17, C:0.09, G:0.17, T:0.57
Consensus pattern (12 bp):
TGAACTTTTTGT
Found at i:32869 original size:13 final size:13
Alignment explanation
Indices: 32851--32875 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32841 CTTTTTGTAA
32851 AGTTTCCTATCAT
1 AGTTTCCTATCAT
32864 AGTTTCCTATCA
1 AGTTTCCTATCA
32876 AATTTGGCAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.24, G:0.08, T:0.44
Consensus pattern (13 bp):
AGTTTCCTATCAT
Found at i:33528 original size:3 final size:3
Alignment explanation
Indices: 33520--33568 Score: 89
Period size: 3 Copynumber: 16.3 Consensus size: 3
33510 TTGCCCGAAA
*
33520 TCT TCT TCT TCT TCT TCT TCT TCT TCT TTT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
33568 T
1 T
33569 ATGCCCTAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TCT
Found at i:34124 original size:30 final size:29
Alignment explanation
Indices: 34068--34124 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 29
34058 TAAAATTACT
*
34068 TTTAAAAATATAAAAATTTGATTTATTCC
1 TTTAAAAATATAAAAATATGATTTATTCC
34097 TTTAAAAATTATAAAAATAT-ATGTTATT
1 TTTAAAAA-TATAAAAATATGAT-TTATT
34125 AAAATTGTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
29 10 0.40
30 15 0.60
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.46
Consensus pattern (29 bp):
TTTAAAAATATAAAAATATGATTTATTCC
Found at i:40194 original size:28 final size:32
Alignment explanation
Indices: 40163--40227 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 32
40153 AGTTAATATT
*
40163 TTTTTTA-ATTTTTAA-AATATT-AAAT-TAA
1 TTTTTTACATTTATAATAATATTAAAATATAA
40191 TTTTTTATCATTTATAATAATATTAAAATATAA
1 TTTTTTA-CATTTATAATAATATTAAAATATAA
40224 TTTT
1 TTTT
40228 ATTTTTATTA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
28 7 0.23
30 7 0.23
31 6 0.19
32 4 0.13
33 7 0.23
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.57
Consensus pattern (32 bp):
TTTTTTACATTTATAATAATATTAAAATATAA
Found at i:42431 original size:9 final size:9
Alignment explanation
Indices: 42384--42521 Score: 77
Period size: 10 Copynumber: 14.9 Consensus size: 9
42374 TAATATTTTC
42384 TTATAAAAA
1 TTATAAAAA
*
42393 TGATTAAAAA
1 TTA-TAAAAA
*
42403 TCATAAAAA
1 TTATAAAAA
* *
42412 TAAAAATAAAA
1 T-TATA-AAAA
42423 TTATCAAAAA
1 TTAT-AAAAA
42433 -TATAAAAA
1 TTATAAAAA
*
42441 TTATTAAATA
1 TTA-TAAAAA
42451 TTA-AAAAA
1 TTATAAAAA
*
42459 -TATGAAAA
1 TTATAAAAA
* *
42467 TAAATATAAAC
1 T-TATA-AAAA
42478 TTATAAAAA
1 TTATAAAAA
*
42487 TTTTAAAATA
1 TTATAAAA-A
*
42497 TTGTAAAAA
1 TTATAAAAA
42506 -TATAAAAA
1 TTATAAAAA
*
42514 ATATAAAA
1 TTATAAAA
42522 GTAAAAAATA
Statistics
Matches: 100, Mismatches: 17, Indels: 24
0.71 0.12 0.17
Matches are distributed among these distances:
7 2 0.02
8 20 0.20
9 32 0.32
10 36 0.36
11 10 0.10
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (9 bp):
TTATAAAAA
Found at i:42467 original size:55 final size:54
Alignment explanation
Indices: 42390--42528 Score: 140
Period size: 55 Copynumber: 2.5 Consensus size: 54
42380 TTTCTTATAA
*
42390 AAATGATT-AAAAATCATAAAAATAAAAATAAAATTATCAAAAA-TATAAAA-ATTATT
1 AAAT-ATTAAAAAAT-AT-AAAATAAAAATAAAATTAT-AAAAATTATAAAATATT-GT
* * *
42446 AAATATTAAAAAATATGAAAATAAATATAAACTTATAAAAATTTTAAAATATTGT
1 AAATATTAAAAAATAT-AAAATAAAAATAAAATTATAAAAATTATAAAATATTGT
*
42501 AAAAATATAAAAAATATAAAAGTAAAAA
1 AAATAT-TAAAAAATATAAAA-TAAAAA
42529 ATATATTTAA
Statistics
Matches: 71, Mismatches: 7, Indels: 10
0.81 0.08 0.11
Matches are distributed among these distances:
54 5 0.07
55 38 0.54
56 28 0.39
ACGTcount: A:0.66, C:0.02, G:0.03, T:0.29
Consensus pattern (54 bp):
AAATATTAAAAAATATAAAATAAAAATAAAATTATAAAAATTATAAAATATTGT
Found at i:42538 original size:46 final size:45
Alignment explanation
Indices: 42406--42548 Score: 132
Period size: 46 Copynumber: 3.1 Consensus size: 45
42396 TTAAAAATCA
* *
42406 TAAAAATA-AAAATAAAATTATCAAAAATATAAAAATTATT-AAATATT
1 TAAAAATATAAAAT-AAA-TAT-AAAAGTAAAAAAATT-TTAAAATATT
* ** *
42453 AAAAAATATGAAAATAAATATAAACTTATAAAAATTTTAAAATATT
1 TAAAAATAT-AAAATAAATATAAAAGTAAAAAAATTTTAAAATATT
42499 GTAAAAATAT-AAA-AAATATAAAAGTAAAAAATATATTTAAAATATT
1 -TAAAAATATAAAATAAATATAAAAGTAAAAAA-AT-TTTAAAATATT
42545 TAAA
1 TAAA
42549 TATTTATAAA
Statistics
Matches: 83, Mismatches: 7, Indels: 14
0.80 0.07 0.13
Matches are distributed among these distances:
44 15 0.18
45 11 0.13
46 31 0.37
47 18 0.22
48 3 0.04
49 5 0.06
ACGTcount: A:0.65, C:0.01, G:0.02, T:0.31
Consensus pattern (45 bp):
TAAAAATATAAAATAAATATAAAAGTAAAAAAATTTTAAAATATT
Found at i:43110 original size:20 final size:20
Alignment explanation
Indices: 43070--43110 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
43060 TTTATATCAA
* * *
43070 TTTTAATTTTTTAATATTTT
1 TTTTAAATTTTTAAGAATTT
43090 TTTTAAATTTTTAAGAATTT
1 TTTTAAATTTTTAAGAATTT
43110 T
1 T
43111 AATATGTTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.68
Consensus pattern (20 bp):
TTTTAAATTTTTAAGAATTT
Found at i:43158 original size:9 final size:8
Alignment explanation
Indices: 43146--43237 Score: 51
Period size: 9 Copynumber: 10.5 Consensus size: 8
43136 TTTAAATGAG
43146 TTTTATTAA
1 TTTTA-TAA
*
43155 TTTTATAT
1 TTTTATAA
43163 TTTTATAA
1 TTTTATAA
43171 TATTTATAAA
1 T-TTTAT-AA
*
43181 TTTTCATAT
1 TTTT-ATAA
43190 TTTTAATAA
1 TTTT-ATAA
43199 GTTTATATCAAA
1 -TTT-TAT--AA
*
43211 TTTAATAA
1 TTTTATAA
*
43219 TTTT-TAT
1 TTTTATAA
*
43226 TTTTACAA
1 TTTTATAA
43234 TTTT
1 TTTT
43238 TTCTGATTTT
Statistics
Matches: 65, Mismatches: 10, Indels: 17
0.71 0.11 0.18
Matches are distributed among these distances:
7 6 0.09
8 20 0.31
9 21 0.32
10 12 0.18
11 4 0.06
12 2 0.03
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.61
Consensus pattern (8 bp):
TTTTATAA
Found at i:43168 original size:17 final size:17
Alignment explanation
Indices: 43146--43178 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
43136 TTTAAATGAG
43146 TTTTATTAAT-TTTATAT
1 TTTTA-TAATATTTATAT
43163 TTTTATAATATTTATA
1 TTTTATAATATTTATA
43179 AATTTTCATA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (17 bp):
TTTTATAATATTTATAT
Found at i:43203 original size:27 final size:27
Alignment explanation
Indices: 43049--43224 Score: 97
Period size: 29 Copynumber: 6.2 Consensus size: 27
43039 TTTTTATGTT
*
43049 TTTTTTATAAGTTTATATCAATTTTAAT-
1 TTTTTAATAAGTTTATA--AATTTTAATA
** * *
43077 TTTTTAATATTTTTTTTAAATTTTTAAGA
1 TTTTTAATA-AGTTTATAAA-TTTTAATA
* * *
43106 ATTTTAATATGTTTTTTAAATTTTAAATA
1 TTTTTAATAAG-TTTATAAATTTT-AATA
* * * *
43135 CTTTAAATGAGTTTTATTAATTTT-ATA
1 TTTTTAATAAG-TTTATAAATTTTAATA
* *
43162 TTTTT-ATAATATTTATAAATTTTCATA
1 TTTTTAATAA-GTTTATAAATTTTAATA
*
43189 TTTTTAATAAGTTTATATCAAATTTAATAA
1 TTTTTAATAAGTTTATA--AATTTTAAT-A
43219 TTTTTA
1 TTTTTA
43225 TTTTTACAAT
Statistics
Matches: 115, Mismatches: 22, Indels: 20
0.73 0.14 0.13
Matches are distributed among these distances:
26 14 0.12
27 22 0.19
28 23 0.20
29 49 0.43
30 7 0.06
ACGTcount: A:0.35, C:0.02, G:0.03, T:0.59
Consensus pattern (27 bp):
TTTTTAATAAGTTTATAAATTTTAATA
Done.