Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010726.1 Kokia drynarioides strain JFW-HI SEQ_125679, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 745

Length: 1243
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.42


Found at i:797 original size:4 final size:4

Alignment explanation


    Indices: 788--832  Score: 81
    Period size: 4  Copynumber: 11.2  Consensus size: 4

        778 TTACTGTCAA

                                      *                             
        788 ACAT ACAT ACAT ACAT ACAT ATAT ACAT ACAT ACAT ACAT ACAT A
          1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT A

        833 ATCATCTAAT


Statistics
Matches: 39,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   4   39  1.00

ACGTcount: A:0.51, C:0.22, G:0.00, T:0.27


Consensus pattern (4 bp):   
ACAT

Found at i:1124 original size:19 final size:19

Alignment explanation


    Indices: 1102--1146  Score: 56
    Period size: 19  Copynumber: 2.4  Consensus size: 19

       1092 TTTTATTAGG

                                
       1102 ATTTAATATTTAAGATAT-T
          1 ATTTAATATTTAA-ATATGT

                 *         *   
       1121 ATTTATTATTTAAATTTGT
          1 ATTTAATATTTAAATATGT

                   
       1140 ATTTAAT
          1 ATTTAAT

       1147 TTAATTTTAT


Statistics
Matches: 22,  Mismatches: 3, Indels: 2
        0.81            0.11        0.07

Matches are distributed among these distances:
  18    3  0.14
  19   19  0.86

ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58


Consensus pattern (19 bp):   
ATTTAATATTTAAATATGT
Done.