Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010748.1 Kokia drynarioides strain JFW-HI SEQ_125706, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 982

Length: 1638
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.41


Found at i:397 original size:215 final size:215

Alignment explanation


    Indices: 1--1624  Score: 1864
    Period size: 215  Copynumber: 7.6  Consensus size: 215

                                     *             *             *           
          1 CTTCGATTCCTTAAAGTATTCAAGATGATCCATTCCTTCAAGCAATTTTTTGAGCATTCCATGCT
          1 CTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTTGAACATTCCATGCT

               *             *                 *      *      *       *   *   
         66 CGAAAAATCACATCATTCGGTCTAAATAGTTTGTCTTTTTGCGAAA-AAGTTTTGGTGTTTAAAT
         65 CGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTG-TAAACAACTTTTGGTCTTTGAAT

             *                       * *                  *           *      
        130 CGAAAA-CTTATTTACGTGAGAATTGTCTCTCTCTTGGTTCTTGGATGAACTTCCGATGTTGTCA
        129 -TAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCA

                                   
        194 AACTTTTACGAGTTCTTTTATAA
        193 AACTTTTACGAGTTCTTTTATAA

                 *   *     * *                       *          *          * 
        217 CTTCGGTTCATTAAATTGTTCAAGACGATCCATTCCTTCGATCAATTTTTGAGCATTCCATGCAC
          1 CTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTGAACATTCCATGCTC

             *      *   *                    *              *                
        282 GGGAAATCGCATAATTTGGTCTAAATAGTTTGTAATTTTGTAAACAACATTTGGTCTTTGAATTA
         66 GAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA

                                             *                               
        347 AAATCTTATTTACGTGAGAATTATTTCTCTCTTTGTTCTTGGACGAACTT-CGATCTTGTCAAAC
        131 AAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAAC

                                
        411 TTTTACGAGTTCTTTTATAA
        196 TTTTACGAGTTCTTTTATAA

                      *                *              *        *   *   *     
        431 CTTCGGA-TCATTAAAGTATTCAAGACTATCCATTCCTTCGATCAATTTTCCGAATATTTCATGC
          1 CTTC-GATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT-TGAACATTCCATGC

               *                                 *    *       *            * 
        495 TCGTGAAAT-AGCATCATTTGGTCTAAATAGTTTGTCTTTTTTTAAACAAGTTTTGGTCTTTGGA
         64 TCGAGAAATCA-CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA

                  *            *     *                                  *    
        559 TTAAAAACTTATTTACGTGGGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CGATCTCGTCA
        128 TTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCA

                      *            
        623 AACTTTTACGGGTTCTTTTATAA
        193 AACTTTTACGAGTTCTTTTATAA

                *          *                       * *            *        * 
        646 CTTCAATTCCTTAAAATATTCAAGACGATCCATTCCTTCCATCAATTTTTCGAATATTCCATTAC
          1 CTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTT-GAACATTCCA-TGC

               *      * * *               *                  **            **
        711 -CGTGAAATCGCGTTATTTGGTCTAAATAGATTGTCATATTT-TAAA-ATGTTTTGGTCTTTGGT
         64 TCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCAT-TTTGTAAACAACTTTTGGTCTTTGAA

                      *     *  *                 **                    *   * 
        773 TTAAAGA-CTCATTTATGTAAGAATTATTTCTCTCTTAATTCTAT-GACGAACTTCCGAACTTTT
        128 TTAAA-ATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCT-TGGACGAACTTCCGATCTTGT

            *          *         *   
        836 AAAACTTTTACAAGTTCTTTTGTAA
        191 CAAACTTTTACGAGTTCTTTTATAA

                 *   *               *                 *       *  *          
        861 CTTC-CTTCGTTAAAGT-TTCAAGATGATCCATTCC-TCTGAGAAATTTTCCGAGCATTCCATGC
          1 CTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTC-GAGCAATTTT-TGAACATTCCATGC

               *           *      *                  *                       
        923 TCGGGAAATCACATCGTTTGGTATAAATAGTTTGTCATTTTATAAACAACTTTTGGTCTTTGAAT
         64 TCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT

                           *              **   *           *      *         *
        988 TAAAATCTTATTTACATGAGAATTATTTCTGACATGGGTT-TTGGACAAACTTCTGATCTTGTCG
        129 TAAAATCTTATTTACGTGAGAATTATTTCTCTC-TTGGTTCTTGGACGAACTTCCGATCTTGTCA

                                   
       1052 AACTTTTACGAGTTCTTTTATAA
        193 AACTTTTACGAGTTCTTTTATAA

            *                 * *        *     *                             
       1075 ATTCGATTCCTTAAAGTAATGAAGACGATGCATTCTTTCGAGCAATTTTTTGAACATTCCATGCT
          1 CTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTTGAACATTCCATGCT

              *                         *                           *        
       1140 CGGGAAATCACATCATTTGGTCTAAATATTTTGTCATTTTGTAAACAACTTTTGGTGTTTGAATT
         65 CGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT

                *   *          *   *                            *  *     *   
       1205 AAAAACTTGTTTACGTGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTGAAA
        130 AAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAA

                    *            
       1270 CTTTTACGGGTTCTTTTATAA
        195 CTTTTACGAGTTCTTTTATAA

                *    *                             * *                **     
       1291 CTTCTATTCGTTAAAGTA-T-AAGACGATCCATTCCTTCAACCAATTTTTCGAACATTTGATGCT
          1 CTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTT-GAACATTCCATGCT

                               *                    *        *               
       1354 CGAGAAATCACATCATTTGCTCTAAATAGTTTGTCATTTTTTAAACAACATTTGGTCTTTGAATT
         65 CGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT

                                                                             
       1419 AAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTT-CGATCTTGTCAAA
        130 AAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAA

                         *  *    
       1483 CTTTTACGAGTTCCTTCATAA
        195 CTTTTACGAGTTCTTTTATAA

                *                    *                  *                    
       1504 CTTCAATTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAGTTTTTCGAACATTCCATGCT
          1 CTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTT-GAACATTCCATGCT

               *             *   *          *                *       
       1569 CGAAAAATCACATCATTCGGTGTAAATAGTTTTTCATTTTGTGAAA-AAGTTTTGGT
         65 CGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAACAACTTTTGGT

       1625 GTTTAAATCA


Statistics
Matches: 1190,  Mismatches: 188, Indels: 61
        0.83            0.13        0.04

Matches are distributed among these distances:
 212    7  0.01
 213  117  0.10
 214  368  0.31
 215  473  0.40
 216  219  0.18
 217    6  0.01

ACGTcount: A:0.27, C:0.17, G:0.15, T:0.41


Consensus pattern (215 bp):   
CTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTGAACATTCCATGCTC
GAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
AAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAAC
TTTTACGAGTTCTTTTATAA

Done.