genome.fa.s1075.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01001075.1 Kokia drynarioides strain JFW-HI SEQ_112331, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45330

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3238--3294	29	1.9	30	85	3	80	45	10	12	31	1.76
6118--6206	44	2.0	43	89	2	133	51	3	4	40	1.39
6175--6207	17	2.0	17	88	5	50	54	9	0	36	1.32
8689--8748	15	4.0	14	79	14	66	83	1	11	3	0.84
8689--8748	29	2.1	28	87	9	86	83	1	11	3	0.84
9461--9539	17	4.7	17	77	3	88	40	0	6	53	1.26
9460--9554	50	1.9	49	91	2	154	41	0	6	52	1.27
11352--11481	30	4.4	30	75	11	115	30	27	6	35	1.83
11394--11522	59	2.2	59	84	4	163	34	28	5	31	1.80
11342--11699	29	12.2	30	71	12	151	36	25	5	32	1.79
11428--11614	59	3.2	58	73	12	132	38	28	3	29	1.74
11765--11847	17	4.9	17	78	0	94	38	2	3	55	1.30
12528--12593	3	21.7	3	90	3	105	66	1	1	30	1.10
13852--14305	29	15.6	28	69	16	151	36	26	3	33	1.74
14203--14311	28	3.8	28	74	16	98	33	30	3	32	1.75
13784--14305	59	8.9	57	73	10	328	35	26	4	34	1.76
18272--18375	48	2.1	49	92	1	174	26	20	4	48	1.69
19675--19719	22	2.1	22	87	4	65	77	2	13	6	1.05
20799--21307	97	5.2	97	90	2	781	37	20	25	16	1.93
22750--22788	3	12.7	3	83	5	51	66	2	2	28	1.18
23189--23226	19	2.1	19	90	5	60	78	2	10	7	1.04
24034--24093	29	2.1	29	90	3	95	36	23	5	35	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24019--24086	29	2.3	30	82	14	88	36	23	4	35	1.75
24040--24107	29	2.3	29	82	5	84	36	29	4	29	1.77
24134--24330	59	3.3	58	82	4	225	32	23	4	38	1.75
24199--24292	29	3.2	29	69	8	73	35	22	5	37	1.77
25400--25485	29	2.9	30	84	6	97	34	27	4	32	1.78
25418--25638	29	7.6	29	75	9	155	33	25	6	34	1.81
25449--25638	58	3.3	58	87	1	256	33	24	6	35	1.82
35338--36554	210	5.8	210	90	0	1808	37	17	22	22	1.94
36894--36973	17	4.7	17	77	0	88	38	1	7	52	1.38
38729--39279	29	18.9	29	73	13	312	35	25	4	34	1.76
38736--38807	28	2.5	28	80	10	83	37	29	2	30	1.72
38729--39307	88	6.6	87	75	7	405	35	25	4	34	1.76
38729--39061	59	5.7	59	73	10	170	36	26	3	33	1.75
38841--39246	175	2.3	172	79	10	414	36	25	3	34	1.73
39171--39303	58	2.3	59	83	8	166	31	24	7	36	1.83
39145--39308	29	5.6	30	79	12	139	32	25	6	35	1.81
45231--45275	19	2.3	19	85	11	56	31	11	20	37	1.87

Tables:   1

The End!