Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010750.1 Kokia drynarioides strain JFW-HI SEQ_125708, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 729

Length: 1215
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.35


Found at i:991 original size:18 final size:18

Alignment explanation


    Indices: 970--1008  Score: 51
    Period size: 18  Copynumber: 2.2  Consensus size: 18

        960 GGGGTGAGGA

                 *       *    
        970 TGAGGGTAAAGGTGAAGG
          1 TGAGGATAAAGGTAAAGG

                   *          
        988 TGAGGATGAAGGTAAAGG
          1 TGAGGATAAAGGTAAAGG

               
       1006 TGA
          1 TGA

       1009 AGGTGAGGAT


Statistics
Matches: 18,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.36, C:0.00, G:0.46, T:0.18


Consensus pattern (18 bp):   
TGAGGATAAAGGTAAAGG

Found at i:994 original size:24 final size:24

Alignment explanation


    Indices: 962--1018  Score: 105
    Period size: 24  Copynumber: 2.4  Consensus size: 24

        952 CAGAATGAGG

                       *            
        962 GGTGAGGATGAGGGTAAAGGTGAA
          1 GGTGAGGATGAAGGTAAAGGTGAA

                                    
        986 GGTGAGGATGAAGGTAAAGGTGAA
          1 GGTGAGGATGAAGGTAAAGGTGAA

                     
       1010 GGTGAGGAT
          1 GGTGAGGAT

       1019 TCAAAAAAGG


Statistics
Matches: 32,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  24   32  1.00

ACGTcount: A:0.33, C:0.00, G:0.49, T:0.18


Consensus pattern (24 bp):   
GGTGAGGATGAAGGTAAAGGTGAA
Done.