Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010751.1 Kokia drynarioides strain JFW-HI SEQ_125709, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2062
ACGTcount: A:0.39, C:0.09, G:0.19, T:0.32


Found at i:521 original size:33 final size:33

Alignment explanation


    Indices: 478--556  Score: 117
    Period size: 33  Copynumber: 2.4  Consensus size: 33

        468 GTTTTGTATG

                                        *     
        478 AAATTGAAGAGAAAGAAAAGAAGGAGAAGGACTC
          1 AAATTGAAGAGAAAGAAAAGAAGGAGAAAGAC-C

                         *                   
        512 -AATTGAAGAGAATGAAAAGAAGGAGAAAGACC
          1 AAATTGAAGAGAAAGAAAAGAAGGAGAAAGACC

                          
        544 AAATTGAAG-GAAA
          1 AAATTGAAGAGAAA

        557 AAGTAAAGGA


Statistics
Matches: 41,  Mismatches: 3, Indels: 4
        0.85            0.06        0.08

Matches are distributed among these distances:
  32    4  0.10
  33   37  0.90

ACGTcount: A:0.57, C:0.05, G:0.28, T:0.10


Consensus pattern (33 bp):   
AAATTGAAGAGAAAGAAAAGAAGGAGAAAGACC

Found at i:1688 original size:18 final size:18

Alignment explanation


    Indices: 1665--1701  Score: 56
    Period size: 18  Copynumber: 2.1  Consensus size: 18

       1655 TTTGTGATCA

                              
       1665 AAATTGAAAGTGAAAGTG
          1 AAATTGAAAGTGAAAGTG

                  *  *        
       1683 AAATTGGAATTGAAAGTG
          1 AAATTGAAAGTGAAAGTG

             
       1701 A
          1 A

       1702 TATGAATTGT


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.49, C:0.00, G:0.27, T:0.24


Consensus pattern (18 bp):   
AAATTGAAAGTGAAAGTG
Done.