Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010760.1 Kokia drynarioides strain JFW-HI SEQ_125719, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 939

Length: 1566
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32


Found at i:460 original size:43 final size:43

Alignment explanation


    Indices: 378--462  Score: 118
    Period size: 43  Copynumber: 2.0  Consensus size: 43

        368 ATTAACATGT

                                  *        *           
        378 TAAATTATATTACTTGACTCGTGTTAATATGGTTGCATGTTAC
          1 TAAATTATATTACTTGACTCGTATTAATATGCTTGCATGTTAC

                               **                      
        421 TAAATTATATTACTTGACTTTTATTAATAT-CTTGACATGTTA
          1 TAAATTATATTACTTGACTCGTATTAATATGCTTG-CATGTTA

        463 TTAATTGTGT


Statistics
Matches: 37,  Mismatches: 4, Indels: 2
        0.86            0.09        0.05

Matches are distributed among these distances:
  42    3  0.08
  43   34  0.92

ACGTcount: A:0.31, C:0.11, G:0.12, T:0.47


Consensus pattern (43 bp):   
TAAATTATATTACTTGACTCGTATTAATATGCTTGCATGTTAC
Done.