Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010763.1 Kokia drynarioides strain JFW-HI SEQ_125722, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4611
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.34

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:1371 original size:20 final size:20

Alignment explanation


    Indices: 1346--1393  Score: 78
    Period size: 20  Copynumber: 2.4  Consensus size: 20

       1336 ATTGCACCAA

                  *             
       1346 TGAATTCCCTTATTTGAATT
          1 TGAATTACCTTATTTGAATT

                    *           
       1366 TGAATTACTTTATTTGAATT
          1 TGAATTACCTTATTTGAATT

                    
       1386 TGAATTAC
          1 TGAATTAC

       1394 GCCACCAAAA


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  20   26  1.00

ACGTcount: A:0.29, C:0.10, G:0.10, T:0.50


Consensus pattern (20 bp):   
TGAATTACCTTATTTGAATT
Done.