Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010778.1 Kokia drynarioides strain JFW-HI SEQ_125742, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2992
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.31

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:1160 original size:5 final size:5

Alignment explanation


    Indices: 1150--1200  Score: 52
    Period size: 5  Copynumber: 9.8  Consensus size: 5

       1140 AGTGCATAAC

                                                                     
       1150 TAAAA TAAAA TTAAAA -AAAA -AAAGA TAAAA TAAAA TAAAA TTGAAAA
          1 TAAAA TAAAA -TAAAA TAAAA TAAA-A TAAAA TAAAA TAAAA -T-AAAA

                
       1197 TAAA
          1 TAAA

       1201 TATACTAATT


Statistics
Matches: 41,  Mismatches: 0, Indels: 10
        0.80            0.00        0.20

Matches are distributed among these distances:
   4    7  0.17
   5   20  0.49
   6   10  0.24
   7    4  0.10

ACGTcount: A:0.76, C:0.00, G:0.04, T:0.20


Consensus pattern (5 bp):   
TAAAA

Found at i:1286 original size:4 final size:4

Alignment explanation


    Indices: 1277--1306  Score: 53
    Period size: 4  Copynumber: 7.8  Consensus size: 4

       1267 CATGAAAGTA

                                                  
       1277 AAAT AAAT AAAT AAAT AAAT AAAT -AAT AAA
          1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA

       1307 AACACTCGGG


Statistics
Matches: 25,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
   3    3  0.12
   4   22  0.88

ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23


Consensus pattern (4 bp):   
AAAT

Done.