Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010779.1 Kokia drynarioides strain JFW-HI SEQ_125743, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1670
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.27


Found at i:542 original size:216 final size:216

Alignment explanation


    Indices: 32--1670  Score: 1522
    Period size: 216  Copynumber: 7.6  Consensus size: 216

         22 TGAAAGTTAA

                   *                      * *      *    *        *        *  
         32 TCCAAGATCCAAGAGAGAAA-ATATTCTCATGCAAATAAATTTTAAATTCAAACACCAAAAGCTG
          1 TCCAAGAACCAAGAGAGAAACA-ATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTG

                 * *              *           * *           *                
         96 TTTACCATATGACAAACTATTTTGACCAAATGATACAATTT-TCCGAGAATGGAATGTTCGAAAA
         65 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCT-CGAGCATGGAATGTTCGAAAA

                   *         *  **    *                                  *   
        160 ATTGG-TTGAAGGAATGCATCTTCTTAAATACTATT-AGGAACCAAAGTTATAAAAGAACTTGTA
        129 A-TGGCTCGAAGGAATGGATAGTCTTGAATACT-TTAAGGAACCAAAGTTATAAAAGAACTCGTA

              **                     *
        223 AATTTTTGGA-AAG-T--TAAGTTCA
        192 AAAGTTT-GACAAGTTCGTAAGTTCG

                     ***                       *                             
        245 TCCAAGAACTGGGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGT
          1 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGT

                     *                                                 *     
        310 TTACAAAATAACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGCAAAAT
         66 TTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAAT

                 *  *  *                                  *                  
        375 GGCTCAAATGAGTGGATAGTCTTGAATACTTTAAGGAACCAAAGTTGTAAAAGAACTCGTAAAAG
        131 GGCTCGAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAG

                  *              
        440 TTTGACTAGTTCGTAAGTTCG
        196 TTTGACAAGTTCGTAAGTTCG

               *                                            *       *        
        461 TCCGAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAGACCTAAA-TT-T
          1 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGT

                       *                                                     
        524 TCTGACAAAATCACAAACTATTTAGACCGAAA-GATGCGATTT-TCGGAGCATGGAATGTTC-AG
         66 T-T-ACAAAATGACAAACTATTTAGACC-AAATGATGCGATTTCTC-GAGCATGGAATGTTCGA-

                      *          *               *            *              
        586 AAAATGGCTCAAAGGAATGGACAGTCTTGAATACTTTGAGGAACCAAAGTGATAAAAGAACTCGT
        126 AAAATGGCTCGAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT

                        *              
        651 AAAAGTTCT-ACTAGTTCGTAAGTTCG
        191 AAAAGTT-TGACAAGTTCGTAAGTTCG

              **                        *         *           * *   *        
        677 TCGTAGAACCACA-AGAGAAACAATTCTAACGTAAATAGGTTTTTAATTCGACGACTAAAAGTTG
          1 TCCAAGAACCA-AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTG

                  *         * *        *   *  *       *   *       *          
        741 TTTACATAATGACAAAGTTTTTAGACCGAATAATACGA-TTCCCGAACATGGAAAGTTCGAAAAA
         65 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAA

                                        *    * *      **      *      *  **   
        805 TTGG-TCGAAGGAATGGATCA-TCTTGAGTACTCTCAGGAACTTAAGTTACAAAAGAGCTATTAA
        130 -TGGCTCGAAGGAATGGAT-AGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAA

            **    *       *  *      *
        868 GTGTTCCG-CAAGTACGGAAGTTCA
        193 AAGTT-TGACAAGTTCGTAAGTTCG

                 *     **         *      *                              *    
        892 TCCAAAAACCATTAGAGAAACATTTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAATTGT
          1 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGT

               *       *  *                                                  
        957 TTAGAAAATGATAACCTATTTAGACCAAATGATGTC-ATTTCTCGAGCATGGAATGCTT-GAAAA
         66 TTACAAAATGACAAACTATTTAGACCAAATGATG-CGATTTCTCGAGCATGGAATG-TTCGAAAA

              *  * *              *         *           *          *     *   
       1020 ATTGCACAAAGGAATGGATCA-CCGTT-AATAGTTTAAGGAACCGAAGTTATAAAGGAACTGGTA
        129 ATGGCTCGAAGGAATGGAT-AGTC-TTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT-

                    *        *         
       1083 AAAAGTTTAACAAGTTTAG-AAGTTCG
        191 AAAAGTTTGACAAG-TTCGTAAGTTCG

                                     *   *   *    *                *        *
       1109 TCCAAGAACCAAGAGAGAAACAATTGTCATGTAGAT-ATTTTTTAATTCAAAGACGAAAAGTTGA
          1 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGT

                                              * *     * *   * *         *    
       1173 TTACAAAATGGA-AAACTATTTAGACCAAATGATTCAATTTCCCAAGCGTAGAATGTTCGGAAAA
         66 TTACAAAAT-GACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAA

             *             *  *        *           ***                 **    
       1237 TTGCTCGAAGGAATGAATCGTCTTGAAAACTTTAAGGAATTGAAGTTATAAAAGAACTCACAAAA
        130 TGGCTCGAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAA

             *        *   *        
       1302 GCTTGACAAGCTCGAAAGTTCAG
        195 GTTTGACAAGTTCGTAAGTTC-G

                     *          * *                     *         *          
       1325 -CCAAGAACAAAGAGAGAAATAGTTCTCACGTAAATAAGTTTTTGATTCAAAGAGCAAAAGTTGT
          1 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGT

               **                         *                   *              
       1389 TTATGAAATGACAAACTATTTAGACCAAATAATGCGATTT-TCAGAGCATTGAATGTTCGAAAAA
         66 TTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTC-GAGCATGGAATGTTCGAAAAA

                                * *        *           *                     
       1453 CTGG-TCGAAGG-ATAGGATCGGCTTGAATAATTTAAGGAACCGAAGTTATAAAAGAACTCGTAA
        130 -TGGCTCGAAGGAAT-GGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAA

                        *   *      *
       1516 AAGTTTGACAAGCTCGGAAGTTCA
        193 AAGTTTGACAAGTTCGTAAGTTCG

                 *                        *            *                     
       1540 TCCAAAAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTCAATTCAAAGACCAAAAGTTGT
          1 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGT

                       * *            ***              *             *       
       1605 TTACAAAATTAAAAAAAC-ATTTAGAATGAATGATGCGATTTCCCGAGCATGGAATGCTCGAAAA
         66 TTACAAAA-T-GACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAA

              
       1669 AT
        129 AT


Statistics
Matches: 1159,  Mismatches: 219, Indels: 93
        0.79            0.15        0.06

Matches are distributed among these distances:
 212    7  0.01
 213  158  0.14
 214    7  0.01
 215  224  0.19
 216  653  0.56
 217  100  0.09
 218   10  0.01

ACGTcount: A:0.40, C:0.15, G:0.18, T:0.27


Consensus pattern (216 bp):   
TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGT
TTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAAT
GGCTCGAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAG
TTTGACAAGTTCGTAAGTTCG

Done.