Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001079.1 Kokia drynarioides strain JFW-HI SEQ_112335, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3809
ACGTcount: A:0.32, C:0.14, G:0.16, T:0.38


Found at i:824 original size:22 final size:22

Alignment explanation


    Indices: 793--859  Score: 89
    Period size: 22  Copynumber: 3.0  Consensus size: 22

        783 ATAAATGGTC

                                  
        793 ACGTCACGATGTCGGGACCTTA
          1 ACGTCACGATGTCGGGACCTTA

                 *    *           
        815 ACGTCGCGATATCGGGACCTTA
          1 ACGTCACGATGTCGGGACCTTA

              *   *           *   
        837 ACATCATGATGTCGGGACATTA
          1 ACGTCACGATGTCGGGACCTTA

             
        859 A
          1 A

        860 TGTTGCTATG


Statistics
Matches: 38,  Mismatches: 7, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  22   38  1.00

ACGTcount: A:0.27, C:0.24, G:0.25, T:0.24


Consensus pattern (22 bp):   
ACGTCACGATGTCGGGACCTTA

Found at i:2159 original size:20 final size:20

Alignment explanation


    Indices: 2136--2174  Score: 53
    Period size: 20  Copynumber: 1.9  Consensus size: 20

       2126 AAATATATTT

                                 
       2136 TAAAAAGTATCAAT-AAATCC
          1 TAAAAAGTA-CAATGAAATCC

                *              
       2156 TAAACAGTACAATGAAATC
          1 TAAAAAGTACAATGAAATC

       2175 AACCAATATA


Statistics
Matches: 17,  Mismatches: 1, Indels: 2
        0.85            0.05        0.10

Matches are distributed among these distances:
  19    4  0.24
  20   13  0.76

ACGTcount: A:0.54, C:0.15, G:0.08, T:0.23


Consensus pattern (20 bp):   
TAAAAAGTACAATGAAATCC
Done.