genome.fa.s10790.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010790.1 Kokia drynarioides strain JFW-HI SEQ_125757, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  192150

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
899--941	21	2.0	21	90	0	68	25	16	37	20	1.93
947--1072	45	2.8	45	87	2	173	19	21	26	32	1.97
3942--3992	2	25.5	2	95	0	93	49	0	1	49	1.12
5156--5203	20	2.3	22	75	13	57	33	0	10	56	1.34
22242--22282	21	2.0	21	85	9	57	65	0	0	34	0.93
22259--22315	15	3.9	14	80	11	53	59	0	3	36	1.14
22242--22285	22	2.0	21	91	4	70	63	0	0	36	0.95
32923--32960	6	6.2	6	96	3	67	0	0	34	65	0.93
39982--40021	19	2.1	19	100	0	80	32	17	10	40	1.83
40931--40956	12	2.2	12	100	0	52	46	0	0	53	1.00
40957--41026	30	2.3	29	85	4	86	54	4	2	38	1.35
40957--41028	29	2.4	30	86	4	92	54	4	2	38	1.34
46681--46708	2	14.0	2	100	0	56	50	0	0	50	1.00
48413--48468	21	2.7	21	88	5	60	44	0	7	48	1.30
53624--53661	17	2.3	17	81	4	51	65	7	0	26	1.19
54920--55100	90	2.0	90	94	0	317	30	18	25	24	1.98
72720--72756	19	2.0	19	89	5	58	21	13	16	48	1.80
72730--72791	29	2.1	29	96	0	115	19	9	20	50	1.76
75869--75903	12	3.0	12	91	4	54	20	8	14	57	1.63
76198--76222	13	1.9	13	100	0	50	24	24	8	44	1.80
76523--76556	16	2.1	16	94	0	59	44	23	23	8	1.81
84545--84570	13	2.0	13	100	0	52	0	15	0	84	0.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91302--91350	23	2.2	22	82	10	55	57	8	2	32	1.40
91632--91657	3	8.7	3	100	0	52	30	0	0	69	0.89
101782--101884	25	4.5	24	78	20	105	42	24	24	8	1.82
101781--101867	44	2.0	45	90	6	142	42	24	24	9	1.83
103310--103337	13	2.2	13	100	0	56	14	25	0	60	1.34
104642--104669	5	5.6	5	100	0	56	39	0	0	60	0.97
105675--105711	2	18.5	2	100	0	74	48	0	0	51	1.00
119364--119585	23	9.6	23	77	7	180	44	19	22	13	1.85
119364--119564	71	2.9	69	86	7	248	45	20	20	13	1.85
119367--119585	46	4.7	46	77	6	203	43	20	22	13	1.86
119413--119605	23	8.3	22	78	8	115	44	19	22	13	1.86
121713--121839	23	5.4	23	87	4	166	42	20	22	14	1.88
121711--121860	46	3.2	46	82	5	133	43	20	23	13	1.86
127784--127910	23	5.4	23	87	4	166	42	20	22	14	1.88
127782--127931	46	3.2	46	82	5	133	43	20	23	13	1.86
132804--133326	60	8.7	58	71	13	265	27	18	16	38	1.91
132749--133435	59	11.5	58	71	13	358	29	17	15	37	1.91
132749--133408	123	5.5	120	77	8	553	29	17	14	37	1.90
132852--133401	244	2.3	240	81	6	657	30	17	14	37	1.90
137233--137280	12	3.7	12	77	20	51	54	0	6	39	1.26
137395--138029	84	7.5	85	93	2	996	43	4	5	47	1.45
139221--139265	20	2.4	19	85	10	65	22	6	4	66	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
139293--139353	22	2.7	22	69	2	59	40	8	3	47	1.49
140427--140518	30	3.1	30	90	0	130	26	7	5	60	1.45
141342--141918	60	9.5	60	75	8	454	36	14	19	29	1.92
141381--141911	122	4.4	122	83	4	630	35	14	19	29	1.91
147193--147262	37	1.9	37	85	8	99	45	1	2	50	1.25
147506--147679	88	2.0	88	90	0	276	38	10	18	32	1.85
155985--156011	2	13.5	2	100	0	54	48	0	0	51	1.00
156505--156545	20	2.1	19	86	9	55	34	0	0	65	0.93
156772--156823	18	3.0	18	81	10	56	48	0	0	51	1.00
160674--160721	23	2.1	23	100	0	96	52	20	4	22	1.64
161494--161570	35	2.2	36	83	9	104	35	7	20	36	1.82
161510--161583	35	2.2	33	83	9	89	29	6	24	39	1.81
168583--168673	36	2.6	36	77	5	105	26	10	9	52	1.67
168850--168915	27	2.5	25	72	15	62	66	13	1	18	1.32
169462--169501	18	2.2	19	86	4	55	32	2	2	62	1.22
186562--186595	5	7.0	5	90	3	52	44	0	55	0	0.99
189969--190072	23	4.4	23	85	7	138	10	26	22	40	1.86
189969--190073	48	2.2	48	86	6	144	11	26	21	40	1.87
189990--190092	48	2.1	48	85	3	136	12	28	21	37	1.90
190780--190851	27	2.7	27	80	0	90	26	19	25	29	1.99

Tables:   1

The End!