Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010795.1 Kokia drynarioides strain JFW-HI SEQ_125762, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7175
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.34

Warning! 158 characters in sequence are not A, C, G, or T


Found at i:1652 original size:19 final size:18

Alignment explanation


    Indices: 1628--1680  Score: 54
    Period size: 19  Copynumber: 2.9  Consensus size: 18

       1618 TAAAGTATAC

                              
       1628 TTATTATTTATTTTTAAA
          1 TTATTATTTATTTTTAAA

                       **      
       1646 TTTATTA-TTAAATTTAAA
          1 -TTATTATTTATTTTTAAA

                 *           
       1664 TTATTTTTATATTTTTA
          1 TTATTATT-TATTTTTA

       1681 TATACTACCT


Statistics
Matches: 27,  Mismatches: 5, Indels: 4
        0.75            0.14        0.11

Matches are distributed among these distances:
  17    5  0.19
  18   10  0.37
  19   12  0.44

ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66


Consensus pattern (18 bp):   
TTATTATTTATTTTTAAA

Found at i:2025 original size:24 final size:26

Alignment explanation


    Indices: 1974--2025  Score: 63
    Period size: 24  Copynumber: 2.1  Consensus size: 26

       1964 CATGGGTATA

                                   *  
       1974 AAAAATTCTAATTAAATAATTATTTT
          1 AAAAATTCTAATTAAATAATTATATT

                   *          *       
       2000 AAAAATTGTAA-T-AATATTTATATT
          1 AAAAATTCTAATTAAATAATTATATT

              
       2024 AA
          1 AA

       2026 TATAATTATA


Statistics
Matches: 23,  Mismatches: 3, Indels: 2
        0.82            0.11        0.07

Matches are distributed among these distances:
  24   12  0.52
  25    1  0.04
  26   10  0.43

ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44


Consensus pattern (26 bp):   
AAAAATTCTAATTAAATAATTATATT
Done.