Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010798.1 Kokia drynarioides strain JFW-HI SEQ_125765, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2930
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32


Found at i:1282 original size:22 final size:22

Alignment explanation


    Indices: 1257--1312  Score: 58
    Period size: 22  Copynumber: 2.5  Consensus size: 22

       1247 TATTTTTTAC

                   *              
       1257 AAATATTTTTTTTACATTTTCG
          1 AAATATTATTTTTACATTTTCG

                  *  ***          
       1279 AAATATAATAAATACATTTTCG
          1 AAATATTATTTTTACATTTTCG

                   *    
       1301 AAATATTGTTTT
          1 AAATATTATTTT

       1313 ACAAAAAAAA


Statistics
Matches: 24,  Mismatches: 10, Indels: 0
        0.71            0.29        0.00

Matches are distributed among these distances:
  22   24  1.00

ACGTcount: A:0.38, C:0.07, G:0.05, T:0.50


Consensus pattern (22 bp):   
AAATATTATTTTTACATTTTCG

Found at i:2436 original size:29 final size:29

Alignment explanation


    Indices: 2375--2464  Score: 94
    Period size: 29  Copynumber: 3.1  Consensus size: 29

       2365 TCCGTTTACT

                             *     * * *  
       2375 TTTTAAATTTAATTTGTAATTTCGTTTTTA
          1 TTTTAAATTTAATTT-TTATTTCCTGTATA

                             *           
       2405 TTTTAAATTTAATTTTTGTTTCCTGTATA
          1 TTTTAAATTTAATTTTTATTTCCTGTATA

                                           
       2434 TTTTAAATTT--TTTTCTAATTTCCTGTATA
          1 TTTTAAATTTAATTTT-T-ATTTCCTGTATA

              
       2463 TT
          1 TT

       2465 GTAATTATTT


Statistics
Matches: 52,  Mismatches: 6, Indels: 5
        0.83            0.10        0.08

Matches are distributed among these distances:
  27    4  0.08
  28    1  0.02
  29   32  0.62
  30   15  0.29

ACGTcount: A:0.24, C:0.07, G:0.06, T:0.63


Consensus pattern (29 bp):   
TTTTAAATTTAATTTTTATTTCCTGTATA
Done.