genome.fa.s10808.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010808.1 Kokia drynarioides strain JFW-HI SEQ_125775, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  274830

Tables:   1   

This is table  1  of  1  ( 100 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2023--2192	68	2.5	69	84	3	211	22	17	18	41	1.90
7501--7566	30	2.3	30	89	7	102	34	3	6	56	1.40
7558--7590	13	2.4	14	90	5	50	27	0	0	72	0.85
7968--8002	17	2.0	18	88	5	54	42	0	0	57	0.99
12361--12671	31	10.4	31	81	9	285	32	18	7	41	1.79
12361--12671	60	5.2	60	81	9	355	32	18	7	41	1.79
12419--12470	17	3.4	17	67	25	51	38	19	7	34	1.80
12360--12643	29	9.5	29	79	8	243	33	18	8	40	1.80
12359--12671	120	2.6	120	83	6	402	32	18	7	40	1.79
14097--14384	52	5.6	51	87	2	398	28	13	23	34	1.92
14100--14381	103	2.7	104	87	2	399	28	13	24	34	1.93
14097--14384	155	1.9	156	90	0	461	28	13	23	34	1.92
14333--14450	60	2.0	60	88	3	175	31	15	22	31	1.94
14827--14899	34	2.1	34	97	0	137	32	12	15	39	1.84
16239--16278	20	2.0	20	100	0	80	45	10	5	40	1.60
28595--28628	17	2.0	17	88	0	50	52	0	23	23	1.47
29489--29538	11	4.7	11	80	9	59	22	32	0	46	1.52
29804--29865	30	2.1	30	96	0	115	24	38	4	32	1.76
32327--32381	21	2.4	23	85	8	69	38	27	10	23	1.88
32989--33172	52	3.6	52	94	0	316	32	24	15	27	1.96
40687--40761	24	3.1	24	84	1	105	25	6	10	57	1.57
42651--42726	24	3.1	24	90	1	116	23	11	9	55	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42651--42745	48	2.0	49	82	2	120	24	11	10	53	1.68
45982--46019	19	2.0	20	89	5	60	18	18	18	44	1.87
51061--51098	19	2.0	19	94	0	67	39	15	13	31	1.86
60028--60079	19	2.7	20	82	11	72	48	3	11	36	1.58
60028--60086	19	3.1	19	78	11	66	45	5	10	38	1.60
60986--61059	20	3.8	20	75	13	73	41	2	9	45	1.50
65853--65886	18	1.9	17	88	5	50	50	11	5	32	1.63
69830--69882	25	2.0	27	86	13	76	60	3	3	32	1.32
72028--72068	19	2.4	18	84	15	52	43	7	0	48	1.30
78878--78915	14	2.8	14	88	4	51	18	18	5	57	1.58
79121--79171	21	2.4	21	80	6	59	29	27	15	27	1.96
80064--80450	52	7.6	52	88	5	513	36	23	13	26	1.92
80349--80434	44	2.0	44	97	0	163	37	23	12	26	1.91
85497--85787	52	5.6	52	90	0	460	34	23	14	27	1.94
85447--85787	104	3.3	104	87	2	474	35	22	14	27	1.93
85447--85789	156	2.2	155	87	4	487	35	22	14	27	1.93
90329--90410	39	2.1	39	86	2	112	37	4	26	30	1.77
94360--94392	7	4.7	7	88	11	50	54	12	0	33	1.37
97066--97333	137	2.0	137	93	0	455	36	19	18	25	1.94
98311--98353	18	2.4	18	92	0	68	41	23	16	18	1.89
102649--102686	17	2.3	17	95	4	69	68	0	0	31	0.90
108427--108711	145	2.0	147	85	5	391	42	9	7	40	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108427--108796	145	2.5	146	80	9	351	42	10	7	39	1.67
110837--110868	3	10.7	3	100	0	64	0	0	31	68	0.90
112551--112650	43	2.3	43	91	3	166	32	12	11	45	1.76
113103--113136	6	5.7	6	92	0	50	41	23	35	0	1.55
113103--113136	12	2.8	12	90	0	59	41	23	35	0	1.55
113569--113627	14	4.2	14	76	8	57	20	0	30	49	1.49
113569--113622	21	2.6	21	80	13	67	20	0	29	50	1.49
116743--116799	27	2.1	27	86	0	78	21	29	15	33	1.94
119242--119352	31	3.7	29	75	10	89	33	10	12	43	1.78
120219--120261	22	2.0	22	85	0	59	65	6	2	25	1.30
121188--121291	46	2.3	45	88	1	145	39	15	19	25	1.91
122513--122547	14	2.5	14	90	0	61	42	34	0	22	1.54
122513--122620	40	2.7	41	80	13	125	46	30	0	22	1.58
122484--122620	20	6.7	20	69	21	70	46	29	1	22	1.61
122513--122609	14	7.1	14	70	19	53	45	31	1	21	1.59
122563--122670	35	3.1	35	81	6	121	48	28	0	22	1.57
138566--138627	28	2.2	28	85	5	81	59	6	3	30	1.38
143024--143077	27	2.0	27	88	0	81	11	20	24	44	1.83
154959--155022	30	2.1	31	85	2	85	48	7	3	40	1.48
157425--157459	17	2.1	17	88	0	52	77	2	0	20	0.90
163360--163552	62	3.1	62	89	3	307	31	12	22	34	1.91
165519--165628	39	2.8	39	81	2	132	40	17	15	27	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
169140--169192	23	2.3	24	75	18	58	62	18	3	15	1.47
169151--169242	23	4.0	23	74	7	78	67	16	5	10	1.39
169181--169279	12	8.3	12	81	1	74	70	12	5	12	1.31
169239--169288	24	2.2	23	86	10	68	74	10	4	12	1.21
169276--169350	22	3.4	22	80	7	89	69	18	5	6	1.30
171725--171762	19	2.1	19	90	5	60	57	7	0	34	1.28
175511--175556	11	4.3	11	81	13	51	73	4	2	19	1.10
180476--180682	102	2.0	102	100	0	414	38	19	15	26	1.92
181451--181484	3	11.0	3	93	6	59	0	35	0	64	0.94
182065--182094	8	3.8	8	100	0	60	26	0	0	73	0.84
182178--182222	20	2.2	21	92	4	74	35	0	6	57	1.25
182992--183038	20	2.3	21	85	10	62	55	0	4	40	1.19
184792--184896	26	4.0	26	83	4	106	26	21	22	28	1.99
184775--184896	52	2.3	52	81	12	126	25	21	24	28	1.99
193412--193451	22	1.9	20	90	10	62	57	0	7	35	1.27
197101--197370	134	2.0	134	99	0	531	31	12	13	42	1.81
197351--197389	19	2.0	20	85	10	53	43	0	5	51	1.24
204647--204821	24	7.4	24	78	3	185	34	17	21	26	1.95
204648--204821	47	3.7	48	82	2	210	35	17	20	26	1.95
204647--204821	71	2.5	70	81	2	206	34	17	21	26	1.95
207831--207911	40	2.0	40	90	0	126	37	19	17	25	1.94
217467--217563	43	2.3	43	81	3	124	47	14	21	16	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
219141--219165	6	4.2	6	100	0	50	16	68	0	16	1.22
226289--226328	20	2.0	20	85	9	55	5	22	0	72	1.04
231060--231258	67	3.0	67	96	0	371	20	11	20	48	1.80
241277--241307	6	5.2	6	100	0	62	16	67	16	0	1.23
241557--241620	22	2.9	22	97	2	119	39	4	4	51	1.44
244334--244379	23	2.0	23	100	0	92	34	8	0	56	1.30
246180--246258	28	2.9	27	77	17	83	62	1	0	36	1.04
246197--246243	16	2.9	17	75	18	55	63	0	0	36	0.94
256307--256378	36	2.0	36	100	0	144	25	16	22	36	1.94
267880--267941	24	2.6	24	87	2	90	33	22	14	29	1.94
270485--270530	21	2.1	23	88	8	69	43	2	30	23	1.66
272534--272578	19	2.4	19	85	7	56	42	2	2	53	1.25

Tables:   1

The End!