Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010820.1 Kokia drynarioides strain JFW-HI SEQ_125787, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13503
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32


Found at i:8866 original size:76 final size:76

Alignment explanation


    Indices: 8768--8908  Score: 167
    Period size: 76  Copynumber: 1.9  Consensus size: 76

       8758 GGTAAACGCT

                  *          *     *    *  **            *        *          
       8768 CCGTCTTTTCAAATCCATCCTTAGTATGGTTTTACACAACCAACATCTACGACAGACTAAATTTT
          1 CCGTCTATTCAAATCCACCCTTAATATGATTCCACACAACCAACAACTACGACAAACTAAATTTT

                       
       8833 AGGCAAACACA
         66 AGGCAAACACA

                                               *              * *            
       8844 CCGTCTATTCAAA-CTCACCCTTAATATGATTCCATACAACCAACAACTATGGCAAACTAAATTT
          1 CCGTCTATTCAAATC-CACCCTTAATATGATTCCACACAACCAACAACTACGACAAACTAAATTT

             
       8908 T
         65 T

       8909 TGTTTTAGGC


Statistics
Matches: 53,  Mismatches: 11, Indels: 2
        0.80            0.17        0.03

Matches are distributed among these distances:
  75    1  0.02
  76   52  0.98

ACGTcount: A:0.35, C:0.27, G:0.09, T:0.29


Consensus pattern (76 bp):   
CCGTCTATTCAAATCCACCCTTAATATGATTCCACACAACCAACAACTACGACAAACTAAATTTT
AGGCAAACACA

Found at i:11270 original size:24 final size:25

Alignment explanation


    Indices: 11214--11263  Score: 84
    Period size: 25  Copynumber: 2.0  Consensus size: 25

      11204 ATTTTAACTC

                                     
      11214 TCAAA-TTTTTTTTAAATAAATACT
          1 TCAAACTTTTTTTTAAATAAATACT

                          *          
      11238 TCAAACTTTTTTTTTAATAAATACT
          1 TCAAACTTTTTTTTAAATAAATACT

             
      11263 T
          1 T

      11264 GAACTTTAAC


Statistics
Matches: 24,  Mismatches: 1, Indels: 1
        0.92            0.04        0.04

Matches are distributed among these distances:
  24    5  0.21
  25   19  0.79

ACGTcount: A:0.38, C:0.10, G:0.00, T:0.52


Consensus pattern (25 bp):   
TCAAACTTTTTTTTAAATAAATACT
Done.