genome.fa.s10824.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010824.1 Kokia drynarioides strain JFW-HI SEQ_125791, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  153398

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4758--4802	22	2.0	23	83	12	58	55	0	2	42	1.12
19251--19299	17	2.9	17	96	0	89	61	12	14	12	1.58
19479--19513	9	3.8	9	85	7	52	45	20	22	11	1.82
28753--28819	33	2.0	33	100	0	134	49	11	17	20	1.79
31896--31950	27	2.0	27	100	0	110	43	18	10	27	1.83
33878--34269	43	9.1	43	85	1	473	28	28	17	24	1.98
33871--34259	128	3.0	127	85	5	480	28	28	17	24	1.98
33878--34245	171	2.1	171	83	0	457	28	28	18	24	1.98
34564--34630	21	3.2	21	78	0	80	1	41	19	37	1.61
36607--36673	35	1.9	35	100	0	134	49	11	7	31	1.67
37037--37177	46	3.0	46	84	9	187	37	2	31	28	1.69
37037--37190	48	3.3	45	83	11	193	35	1	32	30	1.69
38989--39083	41	2.3	42	83	3	120	17	29	18	33	1.95
39053--39164	41	2.7	41	97	0	206	18	25	28	27	1.98
38953--39195	123	2.0	126	81	4	287	19	26	22	30	1.98
42802--42897	47	2.0	47	100	0	192	31	10	33	25	1.89
46001--46060	26	2.3	27	82	8	70	60	31	0	8	1.27
46313--46347	16	2.2	17	90	10	56	85	0	14	0	0.59
67161--67203	18	2.4	18	80	7	52	51	0	2	46	1.13
67622--67679	22	2.5	24	83	8	68	31	0	3	65	1.09
67618--67677	24	2.5	23	78	10	66	31	0	1	66	1.01
75201--75227	14	1.9	14	100	0	54	11	0	0	88	0.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76488--76555	31	2.3	31	76	16	72	63	0	0	36	0.95
76489--76547	7	8.4	7	81	10	50	62	0	0	37	0.95
76938--77010	37	1.9	37	83	10	94	41	0	4	54	1.19
85171--85217	16	2.9	16	80	3	58	55	0	25	19	1.43
85171--85224	16	3.5	15	80	12	56	55	0	24	20	1.43
86119--86187	34	2.0	34	91	0	111	28	26	4	40	1.75
87054--87108	21	2.6	21	85	0	74	29	25	23	21	1.99
87785--87813	13	2.3	13	94	5	51	65	0	0	34	0.93
89328--89390	30	2.1	29	85	2	81	44	3	15	36	1.63
89335--89416	30	2.8	29	83	7	94	41	4	20	32	1.74
89420--89607	29	6.6	29	77	7	161	30	4	27	37	1.76
89417--89607	57	3.3	56	77	7	179	30	4	28	36	1.78
89420--89667	57	4.3	56	76	10	175	32	3	27	37	1.74
89420--89607	86	2.2	85	80	8	200	30	4	27	37	1.76
89559--89878	29	10.9	30	76	8	245	35	2	25	35	1.69
91669--91748	17	4.8	17	81	1	99	56	3	1	38	1.25
92247--92296	16	3.3	15	81	10	57	72	4	4	20	1.18
92250--92309	16	3.8	16	76	10	52	73	3	3	20	1.12
92250--92309	10	5.6	10	79	13	66	73	3	3	20	1.12
92823--92864	22	2.0	21	90	4	66	35	4	2	57	1.33
92913--92946	18	1.9	18	88	5	52	47	8	0	44	1.34
92959--93004	21	2.2	21	84	7	58	45	6	0	47	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93018--93084	31	2.1	32	83	2	82	56	5	4	32	1.43
92846--93224	145	2.7	143	77	12	359	43	8	3	44	1.51
96760--96823	26	2.5	26	76	5	76	64	4	7	23	1.40
96993--97057	28	2.2	30	83	5	89	64	1	10	23	1.33
96991--97055	30	2.2	31	86	5	89	66	1	10	21	1.31
98077--98107	3	10.3	3	92	0	53	32	3	0	64	1.09
104604--104668	3	21.0	3	81	6	67	60	0	1	38	1.07
105666--106017	30	11.9	29	75	8	271	34	25	2	38	1.70
105701--105992	59	4.9	59	82	5	313	35	24	1	38	1.66
105666--106017	59	5.9	59	80	5	302	34	25	2	38	1.70
113424--114695	641	2.0	631	100	0	2454	32	19	22	25	1.97
118458--119084	205	3.1	203	90	4	983	35	20	22	22	1.96
120364--120452	3	29.0	3	86	4	115	61	0	1	37	1.03
121467--121745	29	9.5	29	81	9	273	36	25	1	35	1.65
121466--121836	59	6.3	58	78	9	312	35	25	2	35	1.71
121554--121861	29	10.4	29	74	14	129	36	25	2	36	1.70
143248--143399	38	4.0	38	75	3	117	30	19	26	24	1.98
143246--143359	19	5.9	19	82	2	120	30	19	26	23	1.98
143246--143415	77	2.2	77	83	4	211	32	18	25	24	1.97
147878--147922	22	2.0	22	82	0	54	6	4	15	73	1.21
148702--148726	8	3.1	8	100	0	50	76	0	0	24	0.80
149479--149573	50	1.9	50	82	8	122	47	7	13	31	1.71

Tables:   1

The End!