Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010828.1 Kokia drynarioides strain JFW-HI SEQ_125795, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3719
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.31


Found at i:382 original size:27 final size:27

Alignment explanation


    Indices: 313--383  Score: 90
    Period size: 28  Copynumber: 2.6  Consensus size: 27

        303 TAAAACAACA

                            *   *      
        313 GTAAAGGAAGCCTTTGTGGCGATCTCT
          1 GTAAAGGAAGCCTTTGGGGCAATCTCT

                       *                
        340 GTTAAAGGAAGTCTTTGGGGCAATCTCT
          1 G-TAAAGGAAGCCTTTGGGGCAATCTCT

                             
        368 GTAAAGGACA-CCTTTG
          1 GTAAAGGA-AGCCTTTG

        384 TGGTGAACCT


Statistics
Matches: 38,  Mismatches: 4, Indels: 4
        0.83            0.09        0.09

Matches are distributed among these distances:
  27   13  0.34
  28   25  0.66

ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30


Consensus pattern (27 bp):   
GTAAAGGAAGCCTTTGGGGCAATCTCT
Done.