genome.fa.s10829.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010829.1 Kokia drynarioides strain JFW-HI SEQ_125796, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  380201

Tables:   1   

This is table  1  of  1  ( 114 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
599--633	18	1.9	18	94	0	61	42	20	5	31	1.75
1686--1734	17	2.9	16	79	8	53	26	6	0	67	1.14
5697--5735	20	1.9	20	84	5	51	38	12	2	46	1.56
5908--6186	145	1.9	145	81	2	337	34	23	18	23	1.96
12140--12186	20	2.3	20	96	3	85	61	4	14	19	1.49
12655--12712	30	1.9	30	86	6	82	41	8	6	43	1.62
18477--18542	30	2.2	29	78	7	71	27	7	3	62	1.37
19179--19250	19	3.6	19	78	10	65	52	0	0	47	1.00
19180--19246	22	3.2	21	72	18	59	52	0	0	47	1.00
25334--25422	17	5.4	17	72	26	75	53	2	2	41	1.25
30102--30136	18	1.9	18	88	0	52	8	34	5	51	1.56
37967--38040	38	1.9	39	88	2	114	37	22	16	22	1.93
43637--43773	23	6.0	23	86	0	186	43	18	4	34	1.70
44871--44909	18	2.1	19	90	4	62	33	2	5	58	1.33
44915--44939	13	1.9	13	100	0	50	32	12	0	56	1.36
50875--50900	13	2.0	13	100	0	52	53	15	0	30	1.42
52179--52309	45	3.0	43	67	22	101	54	3	2	39	1.31
55625--55654	15	1.9	16	93	6	53	70	23	0	6	1.11
61637--61676	19	2.1	19	90	0	62	62	5	0	32	1.17
61759--61834	37	2.1	36	85	11	102	39	2	2	55	1.28
61759--61834	11	6.8	11	68	24	52	39	2	2	55	1.28
64421--64463	15	2.9	14	83	13	50	34	9	13	41	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73660--73744	20	4.2	20	76	1	80	27	15	10	47	1.78
74497--75034	96	5.5	95	71	9	364	36	17	18	27	1.93
74449--75117	197	3.4	197	85	1	829	35	17	19	28	1.94
74592--74928	101	3.4	101	71	10	289	38	16	18	27	1.91
74450--74927	50	9.7	49	65	19	120	37	16	19	27	1.93
76791--76839	16	3.1	15	85	8	62	18	4	0	77	0.92
76790--76839	15	3.3	15	76	20	50	20	4	0	76	0.95
76885--76972	43	2.1	41	81	8	97	25	3	6	64	1.34
76924--77023	28	3.6	27	71	26	75	25	4	2	69	1.17
78707--78739	17	1.9	17	88	11	50	69	3	9	18	1.28
80460--80516	21	2.7	21	79	12	55	10	17	3	68	1.33
92187--92219	17	1.9	17	88	11	50	72	3	6	18	1.18
93815--93939	64	2.0	64	90	3	198	40	22	14	23	1.90
94390--94420	10	3.1	10	100	0	62	61	0	9	29	1.28
96295--96368	37	2.0	37	100	0	148	29	13	10	45	1.77
105201--105257	17	3.4	16	79	11	60	14	22	12	50	1.75
106564--106589	10	2.6	10	100	0	52	53	0	46	0	1.00
111643--111692	21	2.4	21	96	0	91	32	8	18	42	1.79
112012--112046	17	2.0	18	88	5	54	54	0	0	45	0.99
112044--112108	30	2.2	29	81	8	69	47	4	1	46	1.32
112574--112610	19	1.9	19	100	0	74	21	0	5	72	1.04
112886--113059	59	2.9	58	81	6	190	54	8	8	29	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112878--113051	60	2.9	58	81	6	199	54	8	8	29	1.58
113140--113165	9	2.9	9	100	0	52	23	11	34	30	1.90
115431--115721	148	2.0	150	87	2	426	36	8	17	37	1.80
119316--119502	52	3.6	51	86	1	230	37	26	11	24	1.89
126428--126614	52	3.6	52	79	2	196	37	23	11	26	1.89
130944--130987	23	1.9	23	81	9	54	4	4	47	43	1.44
137895--137949	21	2.7	21	85	2	76	36	16	20	27	1.93
138039--138073	18	1.9	18	100	0	70	17	0	31	51	1.45
139655--139688	15	2.2	16	89	5	52	67	0	32	0	0.91
161415--161468	25	2.2	25	89	0	81	38	9	22	29	1.85
162032--162075	23	2.0	22	86	4	61	45	15	0	38	1.47
166441--166475	3	11.7	3	100	0	70	65	0	34	0	0.93
167557--167596	12	3.3	12	83	10	55	80	0	20	0	0.72
167561--167591	16	1.9	16	93	0	53	74	0	25	0	0.82
181765--181805	21	2.0	21	85	0	55	19	9	26	43	1.82
186650--186679	12	2.5	12	94	0	51	66	0	33	0	0.92
201808--201846	21	1.9	20	84	5	51	64	7	12	15	1.49
223139--223270	37	3.6	37	78	6	108	28	25	15	31	1.95
223264--223317	26	2.1	26	92	0	90	29	18	20	31	1.96
225282--225319	12	3.2	12	78	14	51	65	0	31	2	1.06
229533--229609	26	2.9	27	82	3	95	22	22	25	29	1.99
241002--241048	18	2.8	17	81	12	62	76	0	19	4	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
241001--241051	17	3.1	17	72	13	52	74	0	17	7	1.05
244615--244663	21	2.3	21	92	0	80	36	16	12	34	1.86
248264--248288	13	1.9	13	100	0	50	16	0	8	76	1.02
250146--250195	20	2.4	21	90	3	75	28	10	22	40	1.86
264467--264501	16	2.2	16	89	0	52	17	5	2	74	1.14
282379--282416	18	2.0	20	85	10	53	39	15	15	28	1.89
282579--282633	21	2.6	21	82	0	65	20	3	40	36	1.70
282789--282952	82	2.0	81	96	1	301	44	28	17	9	1.79
284039--284065	13	2.1	13	100	0	54	14	48	22	14	1.81
284696--286000	434	3.0	434	91	0	2045	31	23	16	28	1.96
289871--289918	16	2.8	17	84	6	62	2	20	2	75	1.02
292832--292870	20	1.9	21	94	5	71	69	5	12	12	1.35
301006--301038	2	16.5	2	87	12	50	48	3	0	48	1.17
301153--301185	6	5.5	6	86	13	50	81	0	3	15	0.80
301153--301185	13	2.8	12	86	13	50	81	0	3	15	0.80
302232--302266	14	2.5	14	85	0	52	34	22	22	20	1.97
302300--302344	20	2.2	21	92	4	74	17	4	40	37	1.70
302300--302349	21	2.5	20	90	3	73	18	4	40	38	1.69
308696--308728	6	5.5	6	86	13	50	81	0	3	15	0.80
308695--308724	13	2.3	13	94	0	51	83	0	3	13	0.77
309796--309847	19	2.7	19	90	0	77	13	15	44	26	1.84
309855--309908	21	2.6	21	88	5	74	20	5	37	37	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
314824--314863	21	2.0	20	85	5	53	37	2	0	60	1.11
315658--315730	29	2.5	29	86	8	112	39	4	8	47	1.52
319430--319488	22	2.7	22	86	0	73	40	15	13	30	1.86
325384--325428	18	2.4	19	82	14	58	62	0	2	35	1.08
325812--325855	17	2.6	17	100	0	88	27	34	0	38	1.57
328688--328727	21	1.9	21	85	10	55	35	22	7	35	1.82
332379--332432	21	2.4	21	76	11	54	1	38	0	59	1.08
338481--338536	18	3.1	18	87	5	60	21	17	28	32	1.96
346550--346595	21	2.1	21	84	8	56	41	8	4	45	1.55
350763--350801	3	13.0	3	100	0	78	0	33	0	66	0.92
351725--351778	28	1.9	28	92	0	90	31	14	29	24	1.95
356621--356785	30	5.5	30	77	2	161	37	4	26	32	1.76
356689--356821	60	2.2	60	82	1	151	35	4	24	35	1.76
357919--357952	14	2.5	14	90	4	52	61	0	0	38	0.96
358495--358548	24	2.3	25	78	12	69	40	3	14	40	1.64
359060--359268	39	5.4	38	71	11	156	22	18	34	24	1.96
359043--359269	78	2.9	78	82	6	262	22	19	33	25	1.97
359216--359329	60	1.9	60	90	0	183	23	18	35	22	1.96
359302--359405	39	2.7	39	87	1	147	25	21	29	24	1.99
359279--359599	116	2.8	115	81	6	369	26	19	30	23	1.98
359457--359677	77	2.8	78	86	4	311	26	21	29	21	1.99
359269--359638	116	3.2	112	75	10	316	26	20	30	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
359318--359679	39	9.3	39	73	15	205	26	20	30	22	1.98
366767--366889	6	19.0	6	83	12	138	51	0	47	0	1.06
377454--377484	11	2.8	11	90	0	53	64	3	0	32	1.09
378056--378252	110	1.8	109	85	3	254	26	23	13	37	1.91

Tables:   1

The End!