Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010838.1 Kokia drynarioides strain JFW-HI SEQ_125805, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1970
ACGTcount: A:0.32, C:0.17, G:0.13, T:0.37

Warning! 21 characters in sequence are not A, C, G, or T


Found at i:138 original size:24 final size:24

Alignment explanation


    Indices: 93--144  Score: 59
    Period size: 24  Copynumber: 2.2  Consensus size: 24

         83 CCCTTTTTTT

                   *                
         93 TTTCTTTCTCCTTCTTCCTTCTTC
          1 TTTCTTTATCCTTCTTCCTTCTTC

                      *  *   *     *
        117 TTTCTTTATCTTTTTTCTTTCTTT
          1 TTTCTTTATCCTTCTTCCTTCTTC

                
        141 TTTC
          1 TTTC

        145 CTTCATTTTT


Statistics
Matches: 23,  Mismatches: 5, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  24   23  1.00

ACGTcount: A:0.02, C:0.27, G:0.00, T:0.71


Consensus pattern (24 bp):   
TTTCTTTATCCTTCTTCCTTCTTC
Done.