genome.fa.s10841.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010841.1 Kokia drynarioides strain JFW-HI SEQ_125808, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  268051

Tables:   1   

This is table  1  of  1  ( 100 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4690--4903	75	2.9	75	87	1	304	18	28	20	32	1.96
5798--6008	75	2.8	75	90	1	325	17	27	22	32	1.96
8633--8657	12	2.1	12	100	0	50	16	16	0	68	1.22
11434--11476	18	2.4	18	88	7	61	46	0	0	53	1.00
13191--13234	22	2.0	22	86	0	61	25	11	4	59	1.51
25847--25881	3	11.7	3	93	0	61	31	0	34	34	1.58
32076--32130	21	2.6	21	97	0	101	58	0	0	41	0.98
32076--32143	21	3.3	20	84	8	84	52	0	0	47	1.00
34739--34853	37	3.1	37	84	9	162	10	17	32	40	1.83
34742--35004	40	6.7	40	81	1	214	14	19	29	36	1.92
35195--35276	40	2.0	40	97	0	155	31	17	7	43	1.76
42332--42376	15	3.0	15	83	0	54	6	11	15	66	1.42
45167--45238	23	3.1	22	78	7	72	13	16	40	29	1.87
51276--51305	14	2.2	14	94	5	53	30	16	10	43	1.81
61743--61772	14	2.2	14	94	5	53	30	16	10	43	1.81
62691--62743	26	2.0	26	100	0	106	39	7	18	33	1.79
78956--78997	16	2.6	17	81	11	52	54	2	2	40	1.26
79100--79151	19	2.8	19	85	8	63	57	5	0	36	1.23
79218--79280	27	2.3	27	100	0	126	52	3	3	41	1.33
79489--79617	9	13.6	10	70	19	55	34	0	3	61	1.17
79499--79613	9	12.4	9	73	11	90	33	0	3	61	1.19
79553--79617	20	3.6	18	80	13	80	38	0	1	60	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95171--95212	22	2.0	21	90	4	66	28	2	0	69	1.01
95246--95280	13	2.8	13	95	4	63	65	0	20	14	1.26
107492--107549	22	2.5	23	80	8	64	48	6	8	36	1.61
109509--109554	17	2.5	19	79	10	51	56	0	13	30	1.37
110488--110540	19	2.7	20	80	11	65	41	11	1	45	1.51
110595--110642	21	2.3	20	75	10	51	41	4	2	52	1.32
110632--110682	20	2.5	20	90	0	75	47	9	0	43	1.36
110547--110789	113	2.2	110	85	6	312	46	8	1	42	1.44
110751--110790	19	2.0	21	85	9	57	45	12	0	42	1.42
111666--112354	42	16.4	42	84	2	701	36	21	18	23	1.95
118595--118640	4	11.5	4	85	0	65	45	0	28	26	1.54
123214--123259	17	2.5	19	79	10	51	56	0	13	30	1.37
123448--123479	16	2.0	16	100	0	64	68	6	6	18	1.32
124032--124489	154	3.0	154	80	11	489	41	9	3	45	1.54
124329--124388	19	3.0	21	77	20	74	43	8	0	48	1.33
126494--126553	21	2.8	22	82	7	70	35	23	6	35	1.81
127356--127548	51	3.8	51	83	2	208	28	20	14	36	1.92
127363--127548	102	1.8	103	85	1	266	27	20	15	36	1.92
131097--131289	51	3.8	51	84	0	242	27	22	14	35	1.93
133738--133790	28	1.9	28	88	3	81	7	18	22	50	1.72
133960--134010	12	4.0	13	75	12	52	45	0	0	54	0.99
134061--134097	6	6.0	6	87	6	56	0	62	0	37	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
134061--134097	13	3.0	12	88	7	56	0	62	0	37	0.96
137270--137303	2	17.5	2	93	6	61	47	0	0	52	1.00
138263--138379	62	1.9	62	84	5	159	50	4	4	41	1.41
138983--139058	37	2.1	37	97	0	143	59	6	18	15	1.58
142215--142246	15	2.1	15	94	0	55	75	3	6	15	1.14
142875--142934	3	20.0	3	78	13	61	0	28	1	70	0.97
142878--142931	18	3.1	17	86	5	72	0	27	1	70	0.98
142875--142933	21	2.8	21	78	17	68	0	28	1	69	0.98
148834--148883	18	2.8	18	78	0	55	18	14	26	42	1.87
173751--173875	17	7.2	17	78	6	126	40	3	3	53	1.33
173751--173846	6	16.7	6	69	16	69	40	2	3	54	1.28
173751--173870	35	3.5	35	79	6	127	40	3	3	53	1.34
173799--173846	23	2.1	23	84	7	62	43	2	4	50	1.33
175592--176018	29	14.7	29	72	12	279	34	25	3	37	1.73
175559--176018	59	7.9	58	81	5	439	34	24	3	36	1.74
183580--183620	17	2.4	17	95	0	73	60	9	2	26	1.40
184691--184804	49	2.3	49	96	0	210	32	15	26	25	1.96
184527--185021	258	1.9	258	87	3	719	35	18	23	22	1.95
184740--185260	209	2.5	208	85	4	717	36	17	23	22	1.95
185587--185701	6	20.2	6	73	16	102	43	1	1	53	1.21
185572--185701	17	7.2	17	78	10	125	40	2	2	54	1.26
185603--185672	23	3.1	22	89	4	104	44	0	1	54	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
185607--185703	11	9.1	11	72	18	71	41	1	2	55	1.18
185595--185659	22	3.0	22	86	6	96	41	1	0	56	1.08
185587--185701	45	2.5	45	82	10	135	43	1	1	53	1.21
187525--187663	30	4.8	28	71	23	99	35	20	2	41	1.68
187525--188013	59	8.4	57	82	7	502	32	24	3	38	1.74
195671--195782	42	2.6	42	80	4	109	41	8	22	27	1.81
195764--195840	40	1.9	40	86	0	109	40	9	24	25	1.85
205971--206019	15	3.2	15	80	5	62	73	2	0	24	0.94
208753--208825	31	2.4	31	88	0	101	39	5	5	49	1.49
216245--216275	2	15.5	2	100	0	62	51	0	0	48	1.00
219523--219585	5	11.6	5	78	21	65	25	0	0	74	0.82
219512--219588	12	6.5	12	74	15	54	25	0	0	74	0.83
219524--219578	17	3.2	17	97	2	101	27	0	0	72	0.85
219512--219588	34	2.5	30	75	22	79	25	0	0	74	0.83
236174--236216	22	2.0	22	81	9	52	60	11	6	20	1.54
236397--236433	15	2.5	15	90	0	56	70	10	2	16	1.27
236689--236729	21	2.0	21	85	0	55	70	9	0	19	1.14
238283--238887	102	5.9	102	78	7	427	25	19	17	37	1.94
238268--238890	213	3.0	203	76	7	493	25	18	18	37	1.94
238562--238780	111	2.0	111	87	3	316	26	19	16	36	1.93
239726--240286	102	5.6	102	83	3	625	24	19	18	37	1.94
240881--240928	20	2.4	20	85	0	60	47	16	14	20	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
240939--240995	20	2.8	20	83	0	69	59	5	10	24	1.51
253675--253866	96	2.0	96	95	0	348	27	23	25	22	2.00
254354--254407	27	2.0	27	89	7	83	38	7	9	44	1.65
255278--255314	18	2.1	18	85	14	51	54	0	2	43	1.14
265145--265533	30	13.2	29	76	10	218	36	26	1	34	1.66
265127--265509	89	4.3	87	81	5	367	37	26	1	34	1.66
265193--265524	89	3.7	89	83	2	373	37	27	1	33	1.66
265127--265524	59	6.7	59	81	6	387	37	26	1	34	1.66
267248--267570	59	5.4	59	82	4	353	32	2	29	36	1.71
267261--267570	29	10.4	30	74	12	196	31	2	29	36	1.71
267248--267570	119	2.7	119	81	6	386	32	2	29	36	1.71
267282--267571	30	9.8	28	74	14	192	32	2	29	36	1.69

Tables:   1

The End!