Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010844.1 Kokia drynarioides strain JFW-HI SEQ_125811, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7212
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33


Found at i:4236 original size:13 final size:14

Alignment explanation


    Indices: 4218--4250  Score: 50
    Period size: 13  Copynumber: 2.4  Consensus size: 14

       4208 GTCAGTATTT

                    *     
       4218 TATAATTAGTT-AA
          1 TATAATTACTTAAA

                          
       4231 TATAATTACTTAAA
          1 TATAATTACTTAAA

                  
       4245 TATAAT
          1 TATAAT

       4251 AACATTTAAT


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  13   10  0.56
  14    8  0.44

ACGTcount: A:0.48, C:0.03, G:0.03, T:0.45


Consensus pattern (14 bp):   
TATAATTACTTAAA

Found at i:4353 original size:11 final size:11

Alignment explanation


    Indices: 4337--4361  Score: 50
    Period size: 11  Copynumber: 2.3  Consensus size: 11

       4327 TTTAAAGAAT

                       
       4337 CAAAATGGGGA
          1 CAAAATGGGGA

                       
       4348 CAAAATGGGGA
          1 CAAAATGGGGA

               
       4359 CAA
          1 CAA

       4362 CAAAAGTCAG


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   14  1.00

ACGTcount: A:0.48, C:0.12, G:0.32, T:0.08


Consensus pattern (11 bp):   
CAAAATGGGGA

Found at i:6066 original size:18 final size:18

Alignment explanation


    Indices: 6034--6072  Score: 51
    Period size: 18  Copynumber: 2.2  Consensus size: 18

       6024 ACCGCCGATG

                      *       
       6034 TATCCTCCACCTCAAATA
          1 TATCCTCCACATCAAATA

                     *     *  
       6052 TATCCTCCATATCAATTA
          1 TATCCTCCACATCAAATA

               
       6070 TAT
          1 TAT

       6073 GGAAACAAAG


Statistics
Matches: 18,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.33, C:0.31, G:0.00, T:0.36


Consensus pattern (18 bp):   
TATCCTCCACATCAAATA
Done.