Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001085.1 Kokia drynarioides strain JFW-HI SEQ_112344, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3681
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29


Found at i:3172 original size:17 final size:17

Alignment explanation


    Indices: 3135--3174  Score: 55
    Period size: 17  Copynumber: 2.4  Consensus size: 17

       3125 CACATTTCGT

                         *   
       3135 TTGTCACTGCATTTTTC
          1 TTGTCACTGCATTCTTC

                             
       3152 TTGTCACTGCA-TCTTC
          1 TTGTCACTGCATTCTTC

                   
       3168 ATTGTCA
          1 -TTGTCA

       3175 TTTCATTTCC


Statistics
Matches: 21,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  16    4  0.19
  17   17  0.81

ACGTcount: A:0.15, C:0.25, G:0.12, T:0.47


Consensus pattern (17 bp):   
TTGTCACTGCATTCTTC
Done.