Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010850.1 Kokia drynarioides strain JFW-HI SEQ_125817, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5716
ACGTcount: A:0.36, C:0.13, G:0.12, T:0.39


Found at i:2861 original size:21 final size:19

Alignment explanation


    Indices: 2837--2876  Score: 53
    Period size: 21  Copynumber: 2.0  Consensus size: 19

       2827 ATTTTTTCTT

                                 
       2837 AATTTATTAATTTAATATTTA
          1 AATTTATTAA-TTAA-ATTTA

                 *             
       2858 AATTTTTTAATTAAATTTA
          1 AATTTATTAATTAAATTTA

       2877 GTTATCAAAA


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  19    5  0.28
  20    4  0.22
  21    9  0.50

ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57


Consensus pattern (19 bp):   
AATTTATTAATTAAATTTA
Done.