genome.fa.s10852.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010852.1 Kokia drynarioides strain JFW-HI SEQ_125820, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  156044

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2476--3007	49	10.9	50	72	11	383	39	19	24	16	1.91
2534--2890	146	2.4	146	81	7	420	40	18	24	16	1.91
2680--3008	97	3.4	96	85	7	400	39	18	24	17	1.92
3409--3453	17	2.6	18	89	3	65	42	2	0	55	1.12
3409--3458	6	8.5	6	77	4	57	42	2	0	56	1.11
5375--5555	28	6.3	29	76	17	148	35	27	3	33	1.75
5375--5556	29	6.3	29	75	16	141	35	28	3	32	1.75
5375--5576	58	3.5	57	84	9	241	33	27	3	35	1.76
5645--5705	28	2.1	29	90	3	97	29	27	13	29	1.94
5645--5715	29	2.5	29	86	6	83	29	26	11	32	1.91
6961--7185	108	2.1	108	98	0	432	36	2	36	24	1.68
10526--10591	33	2.0	33	100	0	132	33	3	9	54	1.47
21355--21389	17	2.1	17	88	0	52	25	2	5	65	1.28
21390--21427	15	2.4	16	82	8	51	50	7	0	42	1.31
24407--24436	15	2.0	15	93	0	51	36	0	0	63	0.95
24340--24459	51	2.4	50	79	6	118	45	0	0	53	1.12
30720--30770	20	2.6	19	84	9	59	41	0	0	58	0.98
30738--30773	18	1.9	19	88	5	56	44	0	0	55	0.99
47387--47425	19	2.0	19	90	5	60	56	0	0	43	0.99
47537--47604	29	2.3	29	80	12	75	35	1	2	60	1.21
48859--48901	2	21.5	2	100	0	86	0	0	48	51	1.00
51023--51068	21	2.3	19	85	7	56	52	2	6	39	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54241--54305	31	2.1	31	91	0	103	43	15	7	33	1.75
62518--62583	21	3.0	22	77	16	75	9	1	19	69	1.23
62579--62630	12	4.4	12	80	4	61	11	1	13	73	1.19
62555--62630	23	3.3	23	77	3	64	11	1	14	72	1.19
64656--66467	43	42.1	43	77	4	1262	35	23	17	23	1.95
69704--69741	12	3.2	12	85	3	51	55	0	0	44	0.99
70768--70805	12	3.2	12	88	0	58	0	44	0	55	0.99
70772--70805	6	5.7	6	92	0	50	0	44	0	55	0.99
70768--70805	18	2.1	18	95	0	67	0	44	0	55	0.99
76804--76832	2	14.5	2	100	0	58	48	0	0	51	1.00
77086--77131	22	2.1	22	84	8	58	41	4	4	50	1.42
77593--77645	17	3.0	18	91	8	83	69	1	0	28	0.99
77613--77679	22	3.0	24	78	12	79	71	0	0	28	0.86
77592--77662	18	3.7	18	70	23	54	67	1	0	30	0.99
78124--78165	17	2.5	17	77	14	50	35	0	4	59	1.19
80094--80197	23	4.4	23	82	7	129	10	23	23	43	1.84
80115--80222	48	2.3	46	82	9	119	12	22	23	42	1.86
84014--84045	16	2.0	16	93	0	55	53	0	18	28	1.45
84464--84540	27	2.8	27	78	9	84	27	12	22	37	1.91
84522--84590	23	3.0	23	82	2	84	27	21	23	27	1.99
92161--92209	6	8.2	6	86	0	62	44	46	4	4	1.41
92161--92209	18	2.7	18	87	0	71	44	46	4	4	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96919--96971	24	2.2	24	80	9	65	33	1	1	62	1.17
103826--103902	38	2.0	38	100	0	154	35	12	20	31	1.91
110272--110319	21	2.3	21	89	7	71	41	25	6	27	1.79
118838--118878	3	13.7	3	100	0	82	34	0	0	65	0.93
124455--124524	19	3.6	18	73	19	61	82	1	15	0	0.73
124454--124523	13	5.5	13	78	11	65	82	1	15	0	0.73
124454--124522	20	3.5	20	79	13	72	82	1	15	0	0.74
124454--124525	8	8.6	8	76	13	56	81	1	16	0	0.75
124454--124524	14	4.9	14	76	19	65	83	1	15	0	0.73
125372--125513	49	2.9	49	81	0	167	36	19	26	17	1.94
125822--125859	20	2.0	20	84	5	51	36	15	7	39	1.77
125842--125965	40	3.1	40	70	11	110	34	20	17	26	1.95
125846--126179	79	4.2	79	84	2	420	31	23	17	27	1.96
125876--126178	39	7.7	40	70	12	151	31	23	17	27	1.97
128710--128743	17	2.1	17	88	5	52	41	0	0	58	0.98
137399--137424	12	2.2	12	100	0	52	42	0	0	57	0.98
140364--140409	19	2.4	18	79	10	56	63	4	0	32	1.14
141226--141259	17	1.9	18	88	5	52	76	0	0	23	0.79
142533--142620	19	4.7	19	75	16	87	36	1	0	62	1.03
142523--142620	38	2.6	39	81	12	116	34	2	1	62	1.14
142533--142606	20	3.8	20	73	18	75	37	1	0	60	1.05
142534--142620	9	9.4	9	69	18	63	35	1	0	63	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
146845--146869	8	3.1	8	100	0	50	24	0	12	64	1.27
154072--154105	16	2.1	16	89	10	52	50	11	0	38	1.39

Tables:   1

The End!