Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010860.1 Kokia drynarioides strain JFW-HI SEQ_125828, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4869
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.37


Found at i:2896 original size:29 final size:29

Alignment explanation


    Indices: 2854--2912  Score: 100
    Period size: 29  Copynumber: 2.0  Consensus size: 29

       2844 ATTGAAAATC

                   *                     
       2854 TACTACTTGAAATAAGCACGTTTACTTTG
          1 TACTACTGGAAATAAGCACGTTTACTTTG

                                    *    
       2883 TACTACTGGAAATAAGCACGTTTATTTTG
          1 TACTACTGGAAATAAGCACGTTTACTTTG

             
       2912 T
          1 T

       2913 GCTGGAAAAG


Statistics
Matches: 28,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  29   28  1.00

ACGTcount: A:0.31, C:0.15, G:0.15, T:0.39


Consensus pattern (29 bp):   
TACTACTGGAAATAAGCACGTTTACTTTG
Done.