genome.fa.s10864.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010864.1 Kokia drynarioides strain JFW-HI SEQ_125832, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  152727

Tables:   1   

This is table  1  of  1  ( 82 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5193--5244	5	10.0	5	79	6	50	25	0	3	71	1.03
5206--5250	20	2.2	21	88	4	65	26	2	4	66	1.22
5764--5888	60	2.1	60	85	7	164	51	1	4	43	1.30
5886--5950	33	2.0	33	96	0	121	40	1	0	58	1.07
5892--5974	43	1.9	43	87	4	123	38	2	0	59	1.11
7468--7519	27	1.9	27	84	0	68	51	3	3	40	1.38
11134--11186	18	3.0	18	77	2	63	49	0	1	49	1.12
12291--12347	30	1.9	30	89	7	89	35	3	26	35	1.74
12369--12487	29	4.1	29	79	7	116	37	1	23	36	1.65
12359--12488	59	2.2	58	80	8	140	39	1	23	35	1.65
13364--13398	18	1.9	18	88	0	52	37	2	0	60	1.12
13369--13413	14	3.2	14	78	12	56	37	4	2	55	1.32
14073--14130	6	10.0	6	79	7	66	53	1	0	44	1.10
14073--14130	17	3.4	17	85	2	80	53	1	0	44	1.10
16136--16164	5	5.8	5	100	0	58	20	58	0	20	1.39
21210--21247	19	2.0	20	84	5	51	26	26	0	47	1.52
21464--21556	34	2.7	36	80	12	115	41	4	3	50	1.38
21464--21553	36	2.6	35	81	11	107	42	4	3	50	1.39
22194--22252	24	2.4	26	75	16	63	23	10	5	61	1.48
29335--29368	6	5.8	6	93	6	61	52	0	17	29	1.45
29334--29370	11	3.3	11	92	7	65	54	0	18	27	1.44
29335--29368	17	1.9	18	94	5	61	52	0	17	29	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39957--40013	6	9.5	6	96	0	105	19	31	0	49	1.49
50459--50628	59	2.9	59	81	6	159	40	5	24	30	1.77
50530--50747	29	7.4	29	70	12	115	40	2	23	33	1.69
50552--50747	29	6.7	28	74	15	130	40	2	23	33	1.66
50518--50764	59	4.2	59	84	7	263	39	2	25	32	1.69
50610--50770	29	5.4	29	78	10	166	39	0	23	36	1.60
52515--52619	6	18.2	6	68	10	67	52	4	0	42	1.22
52546--52619	17	4.4	16	80	8	76	55	2	0	41	1.14
52547--52607	11	5.4	11	81	11	61	55	3	0	40	1.16
53030--53511	147	3.3	146	82	6	525	18	24	18	39	1.92
53053--53509	98	4.7	98	83	5	457	18	24	17	39	1.92
53030--53573	49	11.1	49	74	7	410	18	24	18	39	1.92
54177--54231	23	2.4	23	96	0	101	20	20	10	49	1.78
65394--65760	29	12.5	30	72	11	224	39	2	24	33	1.71
65394--65747	58	6.1	58	80	9	271	39	3	24	32	1.71
65405--65753	116	3.0	115	79	7	357	39	3	24	32	1.71
65394--65771	30	12.9	30	71	10	223	38	3	24	33	1.72
66776--66816	3	13.7	3	100	0	82	34	0	0	65	0.93
67532--67594	17	3.7	18	83	14	80	50	4	1	42	1.32
67532--67594	33	1.9	33	93	0	108	50	4	1	42	1.32
80825--80890	26	2.5	26	85	0	87	43	13	9	33	1.76
86199--86417	82	2.7	82	87	2	298	38	9	14	37	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87954--88007	21	2.6	21	79	5	65	33	25	11	29	1.91
88150--88200	21	2.4	21	96	0	93	29	25	19	25	1.99
93858--93938	33	2.5	33	97	0	153	45	13	7	33	1.71
95704--95746	18	2.3	19	84	4	61	69	0	0	30	0.88
95705--95769	18	3.9	16	71	20	53	69	1	1	27	1.07
95739--95796	22	2.5	23	83	8	73	74	3	5	17	1.15
100743--101407	344	1.9	338	92	2	1107	29	15	20	34	1.94
105351--105465	58	2.0	58	89	3	178	33	0	20	45	1.57
105677--105724	25	1.9	25	83	8	62	41	18	10	29	1.84
107940--107976	5	7.8	5	96	3	60	0	13	0	86	0.57
113809--113901	9	10.4	9	68	15	59	31	3	2	63	1.22
113802--113857	19	2.9	19	84	5	69	35	0	0	64	0.94
113783--113882	46	2.2	46	85	1	130	37	3	1	59	1.20
115232--115292	31	2.0	31	83	0	77	52	4	6	36	1.49
123012--123051	18	2.2	19	90	4	64	60	15	2	22	1.47
124024--124062	17	2.3	18	82	13	55	74	0	23	2	0.94
124119--124144	7	3.7	7	100	0	52	46	0	38	15	1.46
130038--130090	21	2.5	22	78	9	65	30	26	11	32	1.91
132733--132807	21	3.6	20	81	13	80	46	10	18	24	1.80
135351--135522	23	7.4	23	74	11	129	44	19	23	12	1.85
135403--135522	45	2.6	46	80	7	127	43	20	23	12	1.86
135351--135499	70	2.1	67	84	12	187	44	19	22	13	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
146610--146667	19	3.2	17	79	20	64	24	0	3	72	1.00
146630--146662	16	2.0	17	88	5	50	24	0	0	75	0.80
146621--146671	9	5.4	10	75	20	56	25	0	1	72	0.95
147258--147299	10	4.2	10	87	6	59	59	0	0	40	0.97
147258--147320	20	3.0	21	77	13	67	58	0	0	41	0.98
147250--147326	23	3.5	22	71	15	61	59	1	0	38	1.06
147356--147380	12	2.1	12	100	0	50	76	0	0	24	0.80
147948--148004	30	2.0	30	83	13	75	36	1	1	59	1.18
147949--148127	9	19.2	9	66	20	57	31	2	3	61	1.28
147968--148040	19	3.8	19	68	14	53	32	1	4	61	1.23
148028--148082	19	2.8	19	86	8	67	38	3	3	54	1.36
149546--149598	20	2.6	20	77	14	63	45	7	0	47	1.31
150868--150949	28	2.9	29	87	5	105	58	6	6	29	1.46
150888--150949	28	2.2	29	97	2	117	64	3	4	27	1.29
150899--150949	16	3.4	16	71	23	56	62	3	5	27	1.36
151672--151735	26	2.4	27	84	5	78	29	3	1	65	1.17

Tables:   1

The End!