Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010865.1 Kokia drynarioides strain JFW-HI SEQ_125833, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 19556
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35

Warning! 100 characters in sequence are not A, C, G, or T


Found at i:12692 original size:17 final size:17

Alignment explanation


    Indices: 12655--12705  Score: 57
    Period size: 17  Copynumber: 2.9  Consensus size: 17

      12645 GGAGAGATTC

                       *  *   
      12655 ATTTATTTATATAACATA
          1 ATTTATTT-TAGAAAATA

                             
      12673 ATTTATTTTAGAAAATA
          1 ATTTATTTTAGAAAATA

               *     *      
      12690 ATTCATTTTCGAAAAT
          1 ATTTATTTTAGAAAAT

      12706 TTTGATGGAT


Statistics
Matches: 29,  Mismatches: 4, Indels: 1
        0.85            0.12        0.03

Matches are distributed among these distances:
  17   21  0.72
  18    8  0.28

ACGTcount: A:0.43, C:0.06, G:0.04, T:0.47


Consensus pattern (17 bp):   
ATTTATTTTAGAAAATA
Done.