genome.fa.s10866.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010866.1 Kokia drynarioides strain JFW-HI SEQ_125834, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  164310

Tables:   1   

This is table  1  of  1  ( 101 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
649--732	23	3.6	23	82	9	80	11	25	22	40	1.88
670--737	23	2.9	23	86	4	91	13	22	22	42	1.87
707--770	34	1.9	33	90	3	101	14	17	21	46	1.83
18090--18316	79	2.9	76	82	4	224	42	9	14	33	1.78
18173--18321	77	1.9	78	89	2	230	44	10	11	34	1.74
22272--22297	4	6.5	4	100	0	52	23	0	26	50	1.50
27010--27052	8	5.2	8	81	15	52	34	2	0	62	1.08
27010--27039	15	1.9	16	93	6	53	33	0	0	66	0.92
27017--27056	18	2.2	18	86	8	55	35	2	0	62	1.09
32640--32702	24	2.8	23	77	15	60	60	7	0	31	1.26
32946--33010	27	2.4	27	84	0	85	12	20	36	30	1.89
33110--33160	26	2.0	26	88	0	75	50	3	21	23	1.65
34593--34947	58	6.0	58	74	10	247	36	4	25	33	1.76
34630--34785	29	5.3	29	66	17	106	36	3	26	33	1.73
34593--34814	119	1.9	115	83	7	286	37	4	26	31	1.78
34708--34873	29	5.7	29	71	14	94	35	3	27	34	1.72
34824--34949	30	4.2	30	78	8	130	34	4	23	36	1.76
34835--34947	60	1.9	60	83	3	147	35	3	23	38	1.72
35927--35968	3	14.0	3	100	0	84	33	0	0	66	0.92
36705--36772	6	11.8	6	74	13	63	52	2	1	42	1.25
43436--43627	96	2.0	96	81	9	223	37	14	19	28	1.91
43908--44249	29	11.8	28	76	14	245	33	3	29	33	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43973--44249	58	4.7	59	81	8	325	33	2	29	33	1.73
43973--44246	117	2.4	117	84	7	337	33	2	29	33	1.73
43998--44249	87	2.9	87	81	10	284	32	3	30	33	1.74
45314--45367	12	4.2	12	75	13	54	38	5	1	53	1.35
46051--46104	6	9.0	6	79	6	56	53	3	0	42	1.18
46058--46103	18	2.6	18	89	3	67	56	4	0	39	1.19
46059--46137	17	4.5	17	78	13	72	55	7	0	36	1.28
46473--47070	200	3.0	200	89	0	863	21	23	19	36	1.95
58034--58072	3	12.7	3	94	5	69	35	0	0	64	0.94
58780--58861	29	2.8	30	80	12	98	54	3	0	41	1.18
58780--58890	35	3.2	34	80	10	100	54	5	0	40	1.24
58780--58890	17	6.4	17	81	7	116	54	5	0	40	1.24
58780--58857	6	13.3	6	77	10	81	53	2	0	43	1.14
74664--74708	20	2.2	20	92	0	72	64	8	0	26	1.23
78670--78861	30	6.5	29	69	9	120	40	20	2	36	1.65
78671--78861	60	3.2	59	81	7	183	40	20	2	36	1.65
78905--79043	59	2.4	60	80	6	160	34	28	6	30	1.82
78865--79044	29	6.1	29	73	11	134	33	28	7	30	1.85
79024--79079	29	1.9	29	85	0	76	37	19	1	41	1.62
81023--81071	4	12.2	4	95	0	62	51	0	8	40	1.32
81071--81096	2	13.0	2	100	0	52	50	0	50	0	1.00
81857--81881	5	5.0	5	100	0	50	20	0	0	80	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81856--81910	15	3.8	15	72	15	53	21	1	1	74	1.01
82974--83015	2	21.0	2	90	0	66	50	4	0	45	1.23
83244--83269	2	13.0	2	100	0	52	0	50	0	50	1.00
84986--85053	20	3.1	23	76	19	83	38	4	16	41	1.68
84988--85059	23	3.3	23	80	18	82	36	4	15	44	1.66
89258--89477	86	2.6	86	85	2	309	39	21	18	20	1.93
89727--89770	19	2.6	17	83	16	56	63	0	0	36	0.95
90226--90337	38	2.9	38	80	12	115	36	0	2	60	1.11
90235--90318	9	10.0	8	71	25	50	35	0	2	61	1.09
90263--90343	19	4.2	20	70	12	53	41	0	2	55	1.13
96021--96329	104	3.0	104	97	2	581	30	24	14	31	1.94
96437--96509	17	4.4	17	87	1	103	43	0	2	53	1.15
96442--96509	6	11.8	6	72	20	56	44	0	2	52	1.16
96511--96535	13	1.9	13	100	0	50	52	16	8	24	1.70
96529--96584	15	3.7	15	83	9	78	42	26	12	17	1.85
97200--97224	7	3.6	7	100	0	50	44	0	0	56	0.99
98375--98841	59	7.9	59	87	2	663	34	30	3	31	1.75
98405--98868	30	15.7	29	69	15	103	34	29	3	31	1.75
99739--99800	28	2.2	28	88	5	90	45	9	12	32	1.75
102065--102123	30	1.9	32	83	13	79	25	8	0	66	1.20
102154--102203	17	2.8	18	74	20	52	22	6	4	68	1.29
102447--102737	109	2.7	108	88	2	404	33	12	13	40	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102447--102771	109	3.0	107	83	5	393	34	12	13	40	1.81
109819--110231	49	8.4	49	82	4	438	34	17	27	20	1.95
109838--110211	149	2.5	147	85	3	484	34	17	29	19	1.94
112801--113121	112	2.9	109	84	5	421	31	10	15	42	1.82
113749--113792	12	3.5	12	88	11	70	72	6	18	2	1.17
114205--114261	28	2.0	28	96	0	105	26	17	24	31	1.97
118946--119045	43	2.3	43	89	0	146	43	11	14	32	1.80
120408--120475	21	3.2	21	89	4	109	55	11	0	32	1.36
120421--120480	22	2.5	26	84	10	74	60	8	0	31	1.27
122172--122211	19	2.1	19	86	9	55	50	17	0	32	1.47
124190--124346	85	1.8	85	88	0	242	21	25	15	37	1.93
124190--124727	208	2.6	207	86	3	744	23	22	16	37	1.94
124604--124854	85	3.0	84	92	1	403	25	23	14	36	1.93
124398--125015	292	2.1	293	88	2	893	23	22	15	38	1.93
124688--125234	207	2.6	207	84	2	702	24	21	15	37	1.93
124896--125061	84	2.0	84	84	1	215	24	22	15	36	1.93
125461--125670	49	4.3	49	75	3	183	17	31	16	34	1.92
125348--125735	98	3.9	98	75	9	292	17	30	17	34	1.93
125349--125735	197	2.0	197	82	5	478	17	30	17	34	1.93
126677--126713	7	5.4	7	84	15	51	0	16	0	83	0.64
126676--126713	19	2.0	20	94	5	69	0	18	0	81	0.69
126677--126712	12	2.8	13	87	8	56	0	16	0	83	0.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126677--126729	27	2.0	25	85	7	70	5	13	0	81	0.86
150081--150130	12	4.2	12	81	0	55	62	0	36	2	1.07
157540--157757	59	3.7	58	72	14	153	33	4	27	35	1.76
157656--157876	29	7.6	29	78	8	225	30	3	29	36	1.73
157637--157888	59	4.3	59	85	6	284	29	3	30	36	1.74
157644--157888	88	2.8	89	78	10	254	30	3	30	35	1.75
158906--158951	21	2.3	21	88	7	69	41	6	2	50	1.40
159564--159607	15	2.9	15	86	0	61	18	15	25	40	1.90
159641--159725	17	5.1	16	82	4	89	51	4	0	43	1.22
159641--159720	34	2.4	33	87	2	115	51	3	0	45	1.19
159639--159708	6	12.2	6	73	19	60	51	2	0	45	1.16
160047--161112	206	5.2	203	82	7	1073	21	23	19	35	1.96
161678--161737	27	2.2	27	90	3	93	56	8	16	18	1.64

Tables:   1

The End!