genome.fa.s10871.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010871.1 Kokia drynarioides strain JFW-HI SEQ_125839, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  230448

Tables:   1   

This is table  1  of  1  ( 96 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4209--4286	6	13.3	6	76	10	72	41	0	3	55	1.18
4205--4286	29	3.0	29	67	22	77	39	0	4	56	1.21
4182--4286	17	6.1	17	82	5	95	39	0	5	55	1.24
4176--4283	35	3.1	35	80	12	116	36	0	7	56	1.27
4209--4286	11	6.7	11	74	12	59	41	0	3	55	1.18
4965--5002	13	3.0	13	84	3	51	57	7	7	26	1.54
5012--5086	37	2.0	39	84	5	100	54	2	1	41	1.23
6163--6407	29	8.3	29	74	9	176	37	26	2	33	1.71
6163--6413	59	4.3	59	81	9	284	38	25	2	32	1.71
15194--15400	115	1.8	114	91	3	344	35	19	22	22	1.96
15300--15714	206	2.0	205	89	1	634	35	19	22	22	1.96
15768--16325	192	2.8	194	84	5	705	34	19	23	22	1.97
16649--16759	17	6.4	17	81	7	125	42	0	4	53	1.21
16668--16759	6	15.8	6	75	15	86	43	0	3	53	1.17
16649--16759	35	3.2	34	84	7	134	42	0	4	53	1.21
17438--17523	12	7.0	12	74	10	75	54	6	3	34	1.44
17439--17562	12	10.1	12	71	14	74	54	4	3	37	1.38
17531--17582	16	3.2	16	75	5	52	61	0	0	38	0.96
18654--18902	29	8.5	29	75	12	188	38	25	2	34	1.67
18645--18930	117	2.4	118	83	9	336	37	25	3	34	1.72
18645--19027	59	6.5	59	79	10	292	35	25	3	35	1.74
18828--18931	29	3.5	28	73	10	100	34	25	5	33	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19006--19063	28	2.1	28	90	0	89	34	29	8	27	1.87
22801--22881	31	2.7	30	79	12	78	56	8	2	32	1.43
27352--27376	13	1.9	13	100	0	50	8	20	8	64	1.46
29880--29950	25	2.8	27	75	14	80	38	16	4	40	1.68
31367--31560	39	5.0	39	87	0	226	35	21	18	24	1.95
31369--31595	78	2.9	78	80	2	233	35	21	18	25	1.95
32084--32131	23	2.1	23	88	0	69	50	12	6	31	1.65
36289--36395	23	4.6	23	83	2	133	47	14	3	34	1.61
36374--36521	10	15.2	10	72	12	96	41	19	2	36	1.66
36374--36521	20	7.6	20	72	17	116	41	19	2	36	1.66
36372--36450	40	2.0	38	95	4	140	43	18	2	35	1.64
36482--36521	19	2.1	19	90	0	62	40	17	2	40	1.63
36415--36570	68	2.3	67	84	2	204	41	19	2	36	1.65
36501--36619	49	2.4	49	91	0	184	42	17	3	36	1.66
36488--36685	59	3.5	58	78	14	218	40	19	3	36	1.69
36508--36619	24	4.6	23	73	16	84	41	17	3	36	1.67
36651--36685	10	3.4	10	92	4	52	45	20	0	34	1.51
36760--36888	66	2.0	66	80	0	150	42	24	13	20	1.87
37152--37516	36	10.1	36	88	0	523	37	24	8	29	1.85
43493--43519	13	2.1	13	100	0	54	7	22	7	62	1.46
44184--44216	14	2.4	14	100	0	66	24	12	21	42	1.86
44207--44244	15	2.5	15	100	0	76	21	18	5	55	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45565--45953	52	7.5	52	88	2	541	36	23	13	26	1.92
48430--48464	2	17.5	2	100	0	70	48	0	0	51	1.00
49614--49669	25	2.2	25	90	0	85	39	26	14	19	1.90
49636--49727	24	3.8	24	80	1	94	36	20	15	27	1.92
54166--54215	25	2.0	26	92	4	84	44	24	14	18	1.86
54171--54261	24	3.8	24	80	4	85	35	26	16	21	1.95
54589--54709	56	2.2	56	95	1	217	38	15	15	30	1.89
58323--58508	52	3.6	52	86	5	243	37	25	12	25	1.91
64122--64171	26	2.0	24	81	14	57	46	2	2	50	1.24
79194--79233	21	1.9	21	84	0	53	22	25	17	35	1.95
79206--79249	13	3.3	13	87	3	61	13	22	22	40	1.89
80299--80336	19	2.0	18	90	10	58	23	0	7	68	1.16
85517--85570	23	2.3	23	84	9	65	37	0	5	57	1.22
85919--85953	17	2.0	18	88	5	54	48	0	0	51	1.00
86617--86726	29	3.7	30	83	7	145	51	0	1	46	1.11
119650--119693	9	4.7	9	80	8	52	86	2	11	0	0.66
119658--119696	6	6.3	6	85	5	51	87	0	12	0	0.55
119650--119696	19	2.5	19	92	0	76	85	2	12	0	0.70
122255--122283	2	14.5	2	100	0	58	48	0	0	51	1.00
124116--124156	19	2.2	19	100	0	82	43	29	4	21	1.73
131895--131942	25	2.0	23	84	8	60	22	4	6	66	1.32
132972--133023	24	2.2	24	86	6	70	19	53	7	19	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
139370--139446	18	4.5	17	68	12	50	27	28	20	23	1.99
163268--163552	144	2.0	144	88	1	428	27	18	17	36	1.93
176597--176648	19	2.7	20	88	11	81	55	13	9	21	1.66
177042--177089	25	1.9	25	83	8	62	75	0	25	0	0.81
182734--182763	5	6.0	5	96	0	51	23	0	0	76	0.78
188828--188863	18	1.9	19	94	5	65	44	2	2	50	1.31
192503--192539	18	2.1	18	89	0	56	48	0	27	24	1.51
199638--199690	21	2.6	19	75	16	52	35	20	11	32	1.88
199748--199804	21	2.5	24	80	8	66	38	26	5	29	1.78
200431--200668	100	2.4	102	84	6	301	27	22	15	33	1.95
200431--200668	51	4.8	51	87	4	301	27	22	15	33	1.95
206785--206824	21	1.9	21	100	0	80	17	15	12	55	1.70
211166--211191	3	8.7	3	100	0	52	34	34	0	30	1.58
212908--212947	21	1.9	21	84	0	53	50	15	15	20	1.79
216713--216764	26	2.0	27	88	11	81	46	1	0	51	1.12
217566--217599	17	2.0	17	88	0	50	52	2	0	44	1.16
218602--218636	18	2.0	18	94	5	63	65	0	17	17	1.27
218772--218802	16	1.9	16	93	0	53	61	0	0	38	0.96
219129--219188	22	2.8	21	85	9	77	70	1	11	16	1.25
219154--219183	15	1.9	16	93	6	53	70	0	13	16	1.18
219991--220033	19	2.3	19	84	8	52	58	2	0	39	1.11
220631--220817	100	1.9	100	83	4	243	26	25	12	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
221521--221567	4	11.8	4	78	17	53	74	0	6	19	1.03
221519--221569	16	3.2	16	84	10	70	76	0	5	17	0.98
224608--224633	12	2.2	12	100	0	52	50	15	0	34	1.45
226353--226400	24	2.0	24	100	0	96	50	25	20	4	1.66
226977--227002	12	2.2	12	100	0	52	50	15	0	34	1.45
228722--228769	24	2.0	24	100	0	96	50	25	20	4	1.66
229571--229631	22	2.8	22	85	11	74	73	1	9	14	1.16
229597--229626	15	1.9	16	93	6	53	70	0	13	16	1.18

Tables:   1

The End!