Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01010873.1 Kokia drynarioides strain JFW-HI SEQ_125841, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 48668
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Found at i:651 original size:216 final size:215
Alignment explanation
Indices: 13--7486 Score: 6279
Period size: 216 Copynumber: 34.5 Consensus size: 215
3 GTTTTCAAAG
* * * * * * * *
13 CGATCCATTCCTTCGAGAAATTTT-TCAAACTTTCCTTACTCTGTAAATCGCATCGTTTGGTTTA
1 CGATCCATTCTTTCGAGAAATTTTCT-GAACATTCCATACTCAGGAAATCGCATCATTTGGTCTA
* * *
77 AATAGTTTGTC-TGTTTGTAAACAAGTTTTAGTCTTTGAATTACAAACTTATTTACCTGAGAATT
65 AATAGTTTGTCAT-TTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATT
* * * * * * *
141 GTCTCTCTCTTGGTTCATGGATGAACTTCCGCACTTGTCAAACTTTTACGAGTTCTTTTACGACT
129 GTTTCTCTCTTGGTTCTTGCACGAACTTCC-AAATTGTCAAACTTTTACGAGTTCTTTTACAACT
* * *
206 TCGGTTACTTAAAGTTTTCAGGA
193 TCGGTTCCTTAAAGTATTCAAGA
* * *
229 CGATCCATTCCTTCGAGAAATTTTCTGAACATTTCATGCTC-GAGAAATCGCATCATTTGGTCTA
1 CGATCCATTCTTTCGAGAAATTTTCTGAACATTCCATACTCAG-GAAATCGCATCATTTGGTCTA
* * * * * * * * *
293 AA-ATTTTGTCAAATTT-TAAAAAACTTTTGGTTTTTGAATTACAAACTTATTTGCATTAGAA-T
65 AATAGTTTGTC-ATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATT
* * * *
355 -TTT-TCTCTTAGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
129 GTTTCTCTCTTGGTTCTTGCACGAACTTCC-AAATTGTCAAACTTTTACGAGTTCTTTTACAACT
418 TCGGTTCCTTAAAGTATTCAAG-
193 TCGGTTCCTTAAAGTATTCAAGA
* * * *
440 CTGATCCATTCTTTCGAGCAATATTCTGAACATTCCATACTCAGGAAATCGTATAATTTGGTCTA
1 C-GATCCATTCTTTCGAGAAATTTTCTGAACATTCCATACTCAGGAAATCGCATCATTTGGTCTA
* * * * *
505 AATATTTTGTTATTTTGTAAACAAGTTTTGGTCTTGGAATTAAAAACTTAATTACGTTAGAATTG
65 AATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG
* * *
570 TTTCTCTCTTGGTTCTTGCACAAACTTCCAAATTAGTCAAACTTTTACGAGTTCCTTCACAACTT
130 TTTCTCTCTTGGTTCTTGCACGAACTTCCAAATT-GTCAAACTTTTACGAGTTCTTTTACAACTT
* * *
635 CTGTCCCTTGAAGTATTCAAGA
194 CGGTTCCTTAAAGTATTCAAGA
* * * *
657 CAATCCATTCCTTT-GAGCAATTTT-TCGAACATTTCATGCTC-GAGAAATCGCATCATTTGGTC
1 CGATCCATT-CTTTCGAGAAATTTTCT-GAACATTCCATACTCAG-GAAATCGCATCATTTGGTC
** * * * ** * *
719 TAAATAGTTTACCATTTTTTAAACAAGTTTTTGTCTTTGAAATAAAAACTTACCTAGGTGGGAAT
63 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * * *
784 TGTTTCTCTCTTGGAT-TTGCACGAACTTCAAAACATGTCAAACTTTTACGAGTTCTTTTATAAC
128 TGTTTCTCTCTTGGTTCTTGCACGAACTTCCAAA-TTGTCAAACTTTTACGAGTTCTTTTACAAC
* *
848 TTTGGTT-TTGTAAAGTATTCAAGA
192 TTCGGTTCCT-TAAAGTATTCAAGA
* * * * * * * *
872 CGATCCGTTCCTTCGAGAAATTTACTGAACATACCTTGCTCAGGAAATCGCATCATTTAGTTTAA
1 CGATCCATTCTTTCGAGAAATTTTCTGAACATTCCATACTCAGGAAATCGCATCATTTGGTCTAA
* ** * *
937 ATAGTTTGTCATTTTGT-AGCAAGTTTTTAAT-TTTGAATTAAAAACATATTTACATGAGAATTG
66 ATAGTTTGTCATTTTGTAAACAAG-TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG
* * * * * * ** *
1000 TTTCTCTCTTGGTTCTTAG-ATGTACTTCTGC-ATTTATGAGACTTTTACGACCTCTTTTAAAAC
130 TTTCTCTCTTGGTTCTT-GCACGAACTTC--CAAATTGTCAAACTTTTACGAGTTCTTTTACAAC
* * * *
1063 TTTGGTTCATTAAAGTGTTTAAGA
192 TTCGGTTCCTTAAAGTATTCAAGA
* * ** * * *
1087 CGATCCCTTCCTTCGAGAAATTTT-TCGAACATTCCATACTCAATAAATCACATCTTTTGGTTTA
1 CGATCCATTCTTTCGAGAAATTTTCT-GAACATTCCATACTCAGGAAATCGCATCATTTGGTCTA
* * *
1151 AATAGTTTGTCAATTTGTAAACAAG-TTT-GTCTTTGAATTAAAAACTTGTTTACTTGAGAATTG
65 AATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG
* * * * * ** *
1214 TCTCTCTCTTGGTTCATGGACGAACTTCCGCACTTGTCAAACTTTTTTGAGTTCTTTTACGACTT
130 TTTCTCTCTTGGTTCTTGCACGAACTTCC-AAATTGTCAAACTTTTACGAGTTCTTTTACAACTT
* * * *
1279 CGAG-TACTTAAAGTTTTTAGGA
194 CG-GTTCCTTAAAGTATTCAAGA
* * * ** *
1301 CGATCCATTCCTTCGAGAAATTTTCTTAACATTCCATGCTTGGGAAATCGGATCATTTGGTCTAA
1 CGATCCATTCTTTCGAGAAATTTTCTGAACATTCCATACTCAGGAAATCGCATCATTTGGTCTAA
* * * * * *
1366 ATAGTTTGTCATTTTTTAAACAACTTTTGGTTTTTGAATTATAAACTTATTTGCATGAGAATT-T
66 ATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGT
* * * * * *
1430 TT-TCTCTTAGTTCATGGACAAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
131 TTCTCTCTTGGTTCTTGCACGAACTTCC-AAATTGTCAAACTTTTACGAGTTCTTTTACAACTTC
*
1494 GGTTCCTTGAAGTATTCAAG-
195 GGTTCCTTAAAGTATTCAAGA
* * * * *** *
1514 CTGATCCATTCTTTTGAGCAATATTCTGAACATTCCATACTCAAGAAATCATGTAATTTGGTCTA
1 C-GATCCATTCTTTCGAGAAATTTTCTGAACATTCCATACTCAGGAAATCGCATCATTTGGTCTA
* * * *
1579 AATATTTTGTTATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTAATTACGTTAGAATTG
65 AATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG
* * * * *
1644 TTTCTCTTTTGGTTCTTGC-CGGAGCTTCCAAACTAGTCAAACTTTTACGAGTTCCTTCACAACT
130 TTTCTCTCTTGGTTCTTGCAC-GAACTTCCAAA-TTGTCAAACTTTTACGAGTTCTTTTACAACT
* * *
1708 TTGATTCCTTAATGTATTCAAGA
193 TCGGTTCCTTAAAGTATTCAAGA
* * * * *
1731 CAATCCATTCCTTT-GAGCAATTTT-TCGAACATTTCATGCTC-GAGAAATCCCATC-TTCTGGT
1 CGATCCATT-CTTTCGAGAAATTTTCT-GAACATTCCATACTCAG-GAAATCGCATCATT-TGGT
** * * *
1792 CTAAATAGTTTAACATTTTGTAAACAAGTTTTGGTCTTTGAAATAAAAACTCACTTACGTGAGAA
62 CTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
* * * * * * *
1857 TTGTTTCTCTCTTGGTTC-TACACAAACTTCAAAACATGTCAAACTTTTACAAGTTCTTTTATAT
127 TTGTTTCTCTCTTGGTTCTTGCACGAACTTCCAAA-TTGTCAAACTTTTACGAGTTCTTTTACAA
*
1921 CTTCGGATT--TGTAAAGTAGTCAAGA
191 CTTCGG-TTCCT-TAAAGTATTCAAGA
* * * * * * * ** *
1946 TGATCCGTTCCTTCGAGAATTTTTCTGAACATACCATGCTCAGGAAATCACATCATTTACTTTAA
1 CGATCCATTCTTTCGAGAAATTTTCTGAACATTCCATACTCAGGAAATCGCATCATTTGGTCTAA
** ** **** * *
2011 ATAGTTTGTCATTTTGT-AACAAGTTTTAATCTTTTTATTATTTCGCATCATTTA-GTTTA-AAT
66 ATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA-AAAAC-TTATTTACG-TGAGAAT
* * * * ** *** *** *
2073 AGTTTGTCAT-TTTGTAACAAGCTTTAATCTT-TTTATTGTTTAATACTTATTTACATGAGAATT
128 TGTTTCTC-TCTTGGT-TCTTGCACGAA-CTTCCAAATTG-TCAA-AC-T-TTTAC--GAG--TT
* * *
2136 GTTTCT-C-TCTT-GGTT-CTT-AGGTGCACTTCTACATTTG-
182 CTTT-TACAACTTCGGTTCCTTAAAGT--A-TTC-A-A---GA
* ** * *** ** ** * * * * *
2173 TGAAAC-TT-TTACGAGCTGTTTT-AAAAC-TTCGGTTCCTTAAAGTGTTTAAGTCAATCCATTC
1 CGATCCATTCTTTCGAGAAATTTTCTGAACATTC-CATAC-T-CAG-G---AAATC---GCATC-
** * *
2234 CTAACATTCCATACTCAGTAAATCGCATCATTTGGTTTAAATAGTTTGTCAATTTGTAAACAAGT
55 -----ATT---TGGTC--T-AA----AT-AGTT--------T-G----TCATTTTGTAAACAAGT
* * * * *
2299 TTTAGTCTTTGAATTAAAAACTTATTT-CCTGAGAATTGTCTC-CTTGTTGGCTCATTG-ACGAA
91 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC-TCTTGGTTC-TTGCACGAA
* * * * * * *
2361 CTTTTGC-ACTTGTCAAACTTTTACGAGTTCTTTTACGACTTCGGGTACTTAGAA-TTTTCAGGA
154 C--TTCCAAATTGTCAAACTTTTACGAGTTCTTTTACAACTTCGGTTCCTTA-AAGTATTCAAGA
* * * * *
2424 CGATCCATTCCTTCGAGAAATTTTCTGAACATTCAATGCTCGGGAAATCGTATCATTTGGTCTAA
1 CGATCCATTCTTTCGAGAAATTTTCTGAACATTCCATACTCAGGAAATCGCATCATTTGGTCTAA
* * * * * *
2489 ATAGTTTGTCATTTTTTAAAC-AGCTTTTGGT-TTTAAAATTATAGACTTATTTGCATGAGAATT
66 ATAGTTTGTCATTTTGTAAACAAG-TTTTGGTCTTT-GAATTAAAAACTTATTTACGTGAGAATT
* * * * * *
2552 G-TT-TCTCATAGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAATTCTTTTATAACT
129 GTTTCTCTCTTGGTTCTTGCACGAACTTCC-AAATTGTCAAACTTTTACGAGTTCTTTTACAACT
2615 TCGGTTCCTTAAAGTATTCAAGA
193 TCGGTTCCTTAAAGTATTCAAGA
* * * * *
2638 TGATCCATTCTTTCGAGCAATATTCTGAACATTCCATACTCAGGATATCGCATAATTTGGTCTAA
1 CGATCCATTCTTTCGAGAAATTTTCTGAACATTCCATACTCAGGAAATCGCATCATTTGGTCTAA
* * * * *
2703 ATATTTTGTTATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAATTTAATTACGTTAGAATTGT
66 ATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGT
* * * * * * * *
2768 TTCTCTCTTGGTTATTGCATGCACTTCCAAACTAGTCATACTTTTATGAGTTCCTTCACAACTTC
131 TTCTCTCTTGGTTCTTGCACGAACTTCCAAA-TTGTCAAACTTTTACGAGTTCTTTTACAACTTC
2833 GGTTCCTTAAAGTATTCAAGA
195 GGTTCCTTAAAGTATTCAAGA
* * * *
2854 CAATCCATTCCTTT-GAGCAATTTTCTGAACATTTCA-AGCTC-GAGAAATCGCATCATTTGATC
1 CGATCCATT-CTTTCGAGAAATTTTCTGAACATTCCATA-CTCAG-GAAATCGCATCATTTGGTC
* * * * *
2916 TAAATAGTTTATCATTTTGTAAACATGTTTTGGTCTTTGAAATAAAAACTCATTTGCGTGAGAAT
63 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * ** ** * *
2981 TGTTTCTCTCTTCGTTC-TGCATGAACTTGAAAACACGTTAAACTTTTACGAGTTCTTTTATAAC
128 TGTTTCTCTCTTGGTTCTTGCACGAACTTCCAAA-TTGTCAAACTTTTACGAGTTCTTTTACAAC
* * **
3045 TTTGGTT-TTGTACCGTATTCAAGA
192 TTCGGTTCCT-TAAAGTATTCAAGA
* * * * * * *
3069 CGATTCATTCCTTCGAGAAATTTTTTGAACATACCA-AGCTCAAGAAATCGCATCATTTAGTTTA
1 CGATCCATTCTTTCGAGAAATTTTCTGAACATTCCATA-CTCAGGAAATCGCATCATTTGGTCTA
* ** *
3133 AATAGTTTGTCATTTTGT-AACTAGTTTTAAT-TTTGAATTAAAAACTTATTTACATGAGAATTG
65 AATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG
* * * * * * *
3196 TTTCTATCTTGGTTCTTAG-ATGTACTTCTGC-ATTTGTGAAACTTTTACGAGCTCTTTTAAAAC
130 TTTCTCTCTTGGTTCTT-GCACGAACTTC--CAAATTGTCAAACTTTTACGAGTTCTTTTACAAC
* * *
3259 TTCGGTTCCTTAAAGTGTTTAGGA
192 TTCGGTTCCTTAAAGTATTCAAGA
* * * *
3283 CGATCCGTT-TCTTCGAGAAATTTT-TCGAACATTGCATACTCAGTAAATCGCATCATTTGGTTT
1 CGATCCATTCT-TTCGAGAAATTTTCT-GAACATTCCATACTCAGGAAATCGCATCATTTGGTCT
* * * * *
3346 AAATAGTTTTTAAATTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACCTGAGAATT
64 AAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATT
* * * * *
3411 GTCTCTCTCTTGGTTCATGGACGAACTTCCGCACTTGTCAAACTTTTACGAGTTCTTTTACAACT
129 GTTTCTCTCTTGGTTCTTGCACGAACTTCC-AAATTGTCAAACTTTTACGAGTTCTTTTACAACT
* * *
3476 TCGGGTACTTAAAG-ATTTCAGGA
193 TCGGTTCCTTAAAGTA-TTCAAGA
* * * ** * *
3499 CGAACCATTCCTTCGAGAAATTTTCTTAACATTCCATGTTTAGGAAATTGCATCATTTGGTCTAA
1 CGATCCATTCTTTCGAGAAATTTTCTGAACATTCCATACTCAGGAAATCGCATCATTTGGTCTAA
* * * * * * *
3564 ATAGTTTGTCATTTTTTAAACAACTTTTGGTTTTTGAATTATAAACTTATTTGCATGAGAATTGA
66 ATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGT
* * * * * * * *
3629 TTCT-T-TTAGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTGCGAGTTCCTTTATAACTTC
131 TTCTCTCTTGGTTCTTGCACGAAC-TTCCAAATTGTCAAACTTTTACGAGTTCTTTTACAACTTC
3692 GGTTCCTTAAAGTATTCAAGA
195 GGTTCCTTAAAGTATTCAAGA
* * * * * * *
3713 TGATCCACTCTTTCGAGTAATATTCTGAACATTTCATACTCAAGAAATCGCATAATTTGGTCTAA
1 CGATCCATTCTTTCGAGAAATTTTCTGAACATTCCATACTCAGGAAATCGCATCATTTGGTCTAA
* * * * * *
3778 ATATTTTTTTATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTAATTACGTTAGAATTTT
66 ATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGT
* * * * * * *
3843 TTCTCTCTTGGTTATTGCATGCACTTCCAAACTAGTCATACTTTTACGAGTTCCTTCACAACTTC
131 TTCTCTCTTGGTTCTTGCACGAACTTCCAAA-TTGTCAAACTTTTACGAGTTCTTTTACAACTTC
3908 GGTTCCTTAAAGTATTCAAGA
195 GGTTCCTTAAAGTATTCAAGA
* * * *
3929 CAATCCATTCCTTT-GAGCAATTTTCTGAACATTTCA-ATCTCAAGAAATCGCATCATTTGGTCT
1 CGATCCATT-CTTTCGAGAAATTTTCTGAACATTCCATA-CTCAGGAAATCGCATCATTTGGTCT
* * * * *
3992 AAAATAGTTTATCATTTTGTAAACATGTTTTGGTCTTTGAAATAAAAACTCATTTGCGTGAGAAT
64 -AAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * ** *
4057 TGTTTCTCTCTTTGTTC-TGCACGAACTT-GAGAACACGTCAAACTTTTACGAGTTCTTTTATAA
128 TGTTTCTCTCTTGGTTCTTGCACGAACTTCCA-AA-TTGTCAAACTTTTACGAGTTCTTTTACAA
* * **
4120 CTTTGGTT-TTGTACCGTATTCAAGA
191 CTTCGGTTCCT-TAAAGTATTCAAGA
* * * *
4145 CGATCCATTCCTTT-GAGAAAGTTTT-TGAACATACCA-AGCTCAAGAAATCGCATCATTTAGTT
1 CGATCCATT-CTTTCGAGAAA-TTTTCTGAACATTCCATA-CTCAGGAAATCGCATCATTTGGTC
* ** *
4207 TAAATAGTTTGTCATTTTGT-AACTAGTTTTAAT-TTTGAATTAAAAACTTATTTACATGAGAAT
63 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * * * * * * *
4270 TGTTTCTATCTTGGTTCTTAG-ATGTACTTCTGC-ATTTGTGAAAATTTTACGAGCTCTTTTAAA
128 TGTTTCTCTCTTGGTTCTT-GCACGAACTTC--CAAATTGTCAAACTTTTACGAGTTCTTTTACA
* * *
4333 ACTTCGGTTCCTTAAAGTGTTTAGGA
190 ACTTCGGTTCCTTAAAGTATTCAAGA
* * * * * *
4359 CGATCCGTTCCTTCGAGAAATTTTCCGAACATTGCATACTCAGTAAATCGCATCATTTGGTTTAA
1 CGATCCATTCTTTCGAGAAATTTTCTGAACATTCCATACTCAGGAAATCGCATCATTTGGTCTAA
* * * *
4424 ATAGTTTTTCAATTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACCTGAGAATTGT
66 ATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGT
* * * *
4489 CTCTCTCTTGGTTCATGGACGAACTTTCGC-ACTTGTCAAACTTTTACGAGTTCTTTTACAACTT
131 TTCTCTCTTGGTTCTTGCACGAAC-TTC-CAAATTGTCAAACTTTTACGAGTTCTTTTACAACTT
* * * *
4553 CGGGTACTTAAAGTTTTCAGGA
194 CGGTTCCTTAAAGTATTCAAGA
* * * * * ** * *
4575 CGAACCAGTCCTTCAAGAAATTTTCTGAACATTTCATGTTAAGGAAATTGCATCATTTGGTCTAA
1 CGATCCATTCTTTCGAGAAATTTTCTGAACATTCCATACTCAGGAAATCGCATCATTTGGTCTAA
* * * * * * * *
4640 ATACTTTGTCATTTTTTAAACAACTTTTGGTTTTTGAATTATAAACTTATTTGCATGAGAATTGA
66 ATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGT
* * * * ** * *
4705 TTCT-T-TTAGTTCTTGGACGAACTTCCGAACTTGTCTAACTTTTGTGAGTTCCTTTATAACTTC
131 TTCTCTCTTGGTTCTTGCACGAACTTCC-AAATTGTCAAACTTTTACGAGTTCTTTTACAACTTC
4768 GGTTCCTTAAAGTATTCAAGA
195 GGTTCCTTAAAGTATTCAAGA
* ** * *
4789 TGATCCACACTTTCGAGTAATATTT-TGAACATTCCATACTCAGGAAATCGCATAATTTGGTCTA
1 CGATCCATTCTTTCGAGAAAT-TTTCTGAACATTCCATACTCAGGAAATCGCATCATTTGGTCTA
* * * * *
4853 AATATTTTATTATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTAATTACGTTAGAATTG
65 AATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG
* * * *
4918 TTTCTCTCTTAGTTCTTGCACGAACTTCCAAACTAGTCAAACTTTTACGAGTTCCTTCACAACTT
130 TTTCTCTCTTGGTTCTTGCACGAACTTCCAAA-TTGTCAAACTTTTACGAGTTCTTTTACAACTT
4983 CGGTTCCTTAAAGTATTCAAGA
194 CGGTTCCTTAAAGTATTCAAGA
** * * * ** * * *
5005 TAATCCATTCCTTT-GAGCAATTTTGTGAACATTTCACGCTC-GAGAAATTGCAACGTTTGGTCT
1 CGATCCATT-CTTTCGAGAAATTTTCTGAACATTCCATACTCAG-GAAATCGCATCATTTGGTCT
* * * * *
5068 AAATAGTTTATCATTTTGTAAACAAGTTTTTGTTTTTGAAATAAAAACATATTTACGTGAGAATT
64 AAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATT
* * *
5133 GTTTCTCTCTTGGTTC-TGCACGAACTTCAAAACCTGTCAAACTTTTACGAGTTCTTTTATAACT
129 GTTTCTCTCTTGGTTCTTGCACGAACTTCCAAA-TTGTCAAACTTTTACGAGTTCTTTTACAACT
* *
5197 TCGGTT-TTGTAAAGTTTTCAAGA
193 TCGGTTCCT-TAAAGTATTCAAGA
* * * * * *
5220 CGATCCATTCGTTCAAGAAATTTTCTGAACATACCATGCTCAGGAAATCGCATCATTTAGTTTAA
1 CGATCCATTCTTTCGAGAAATTTTCTGAACATTCCATACTCAGGAAATCGCATCATTTGGTCTAA
** * * *
5285 ATAGTTTGTCATTTTGT-AACAAGTTTTAATCATTGAATTAAAAACTGATTTACATGAGAATTGT
66 ATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGT
* * * * * * * *
5349 TTCTCTCTTGGTTCTTAG-ATGTAGTTCTGC-ATTTGTGAAACTTTTTCGAGCTCTTTTAAAACT
131 TTCTCTCTTGGTTCTT-GCACGAACTTC--CAAATTGTCAAACTTTTACGAGTTCTTTTACAACT
* *
5412 TCGGTTCCTTAAAGTGTTTAAGA
193 TCGGTTCCTTAAAGTATTCAAGA
* * * * * *
5435 CGATCCCTTCCTTCGAGAAATTTT-TCGAACATTGCATACTCAGTAAATCGCATAATTTGGTTTA
1 CGATCCATTCTTTCGAGAAATTTTCT-GAACATTCCATACTCAGGAAATCGCATCATTTGGTCTA
* * * *
5499 AATAGTTTGTCAATTTGTAAACAAG-TTTAGTCTTTGAATTAAAAACTTATTTACCTAAGAATTG
65 AATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG
* * * * * **
5563 TCTCTCTCTTGGTTCATGGACGAACTTACGC-ACTTGTCAAACTTTTACGACTTCTTTTACGGCT
130 TTTCTCTCTTGGTTCTTGCACGAACTT-C-CAAATTGTCAAACTTTTACGAGTTCTTTTACAACT
* * *
5627 TCGAG-TACTTAAAGTTTTCAGGA
193 TCG-GTTCCTTAAAGTATTCAAGA
* * * * * *
5650 TGATCCATTCCTTCGAGAAATTTTCAGAACATTTCATGCT-AGGGAAATCGCATAATTTGGTCTA
1 CGATCCATTCTTTCGAGAAATTTTCTGAACATTCCATACTCA-GGAAATCGCATCATTTGGTCTA
* * * * * *
5714 AATAGATTGTCATTTTTTTAAACAACTTTTGG-CTCTTGAATTATAAACTTATTTGCATGAGAAT
65 AATAGTTTGTCA-TTTTGTAAACAAGTTTTGGTCT-TTGAATTAAAAACTTATTTACGTGAGAAT
* * * * * *
5778 TG-TT-TCTCTTAGTTCTTGGACGAACTTCTGAACTTATCAAACTTTTACGAGTTCTTTTATAAC
128 TGTTTCTCTCTTGGTTCTTGCACGAACTTC-CAAATTGTCAAACTTTTACGAGTTCTTTTACAAC
* *
5841 TTCGGTTCCATAGAGTATTCAAGA
192 TTCGGTTCCTTAAAGTATTCAAGA
* * * * * * **
5865 TGATCCATTCTTTCGAGCAATATTCTGAACATTCCATTCCCAGGAAATCGCATAATTTCATCTAA
1 CGATCCATTCTTTCGAGAAATTTTCTGAACATTCCATACTCAGGAAATCGCATCATTTGGTCTAA
* * * * *
5930 ATATTTTGTTATTTTGTAAACAAGTTTTGGACTTTGAATTAAAAACTTAATTACGTTAGAATTGT
66 ATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGT
* * * *
5995 TTCTCTCTTGGTTTTTGCACGAACTTCCAAACTAGTCAAACTTTTACGAGTTCCTTCACAACTTC
131 TTCTCTCTTGGTTCTTGCACGAACTTCCAAA-TTGTCAAACTTTTACGAGTTCTTTTACAACTTC
6060 GGTTCCTTAAAGTATTCAAGA
195 GGTTCCTTAAAGTATTCAAGA
* * * * *
6081 CAATCCATTTCTTT-GAGCAATTTTTTGAACATTTCATGCTC-GAGAAATCGCATCATTTGGTCT
1 CGATCCA-TTCTTTCGAGAAATTTTCTGAACATTCCATACTCAG-GAAATCGCATCATTTGGTCT
* * *
6144 AAATAGTTTATCATTTTGTAAACAAGTTTTGGTCTTTAAAATAAAAACTTATTTACGTGAGAATT
64 AAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATT
* * * * * *
6209 GTTTCTCTCTTGGCTC-TGCACGAACTTCAAAACATGTCAAAGTTTTACGAGTTCTTTTATAAGT
129 GTTTCTCTCTTGGTTCTTGCACGAACTTCCAAA-TTGTCAAACTTTTACGAGTTCTTTTACAACT
* *
6273 TAGGTT-TTGTAAAGTATTCAAGA
193 TCGGTTCCT-TAAAGTATTCAAGA
* * * * * ** *
6296 TGATCCATTCGTTCGAGAAATTTTCTGAACATACCATGCTCAGGAAAT-GCGTCATTTATTTTAA
1 CGATCCATTCTTTCGAGAAATTTTCTGAACATTCCATACTCAGGAAATCGCATCATTTGGTCTAA
** ** *
6360 ATAGTTTGTCATTTTGT-AGTAAGTTTTAATCTTTGAATTAAAAACTTATTTACTTGAGAATTGT
66 ATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGT
* * * * * * * *
6424 TTCTCTATTGGTTCTT-CGATGTACTTCTGC-ATTTGTGAAACTTTTACGAGCTCTTTTAAAACA
131 TTCTCTCTTGGTTCTTGC-ACGAACTTC--CAAATTGTCAAACTTTTACGAGTTCTTTTACAACT
* *
6487 TCGGTTCCTTAAAGTGTTTAAGA
193 TCGGTTCCTTAAAGTATTCAAGA
* *** * * * * * *
6510 CGATCCGTTCCCCCGAGAAATTTT-TCGAACATTGCTTACTTAGTAAATCGCATCATTTGATTTA
1 CGATCCATTCTTTCGAGAAATTTTCT-GAACATTCCATACTCAGGAAATCGCATCATTTGGTCTA
* * * * * *
6574 AATAGTTTGTCAATTTATGAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACTTGAGAGTTG
65 AATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG
* * * * * *
6639 TCTT-TCTCTTGGTTCATGGACGAACTTCCACACTTGTCAAACTTTAAAGAGTTCTTTTACGACT
130 T-TTCTCTCTTGGTTCTTGCACGAACTTCCA-AATTGTCAAACTTTTACGAGTTCTTTTACAACT
* * *
6703 TCGGGTACC-TAAAGTTTTCAGGA
193 TC-GGTTCCTTAAAGTATTCAAGA
* * * *
6726 CGATCCATTCCTTCGAGAAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGATCTAA
1 CGATCCATTCTTTCGAGAAATTTTCTGAACATTCCATACTCAGGAAATCGCATCATTTGGTCTAA
* * * * * *
6791 ATAGTTTGTCATTTTTTAAACAACTTTTGGTTTTTGAATTATAAACTTATTTGCATGAGAATTG-
66 ATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGT
* * * *
6855 TT-TCTCTTAGTTCATGGACGAACTTCCCAACTTGTCAAACTTTTACGAGTTCTTTTACAACTTC
131 TTCTCTCTTGGTTCTTGCACGAACTT-CCAAATTGTCAAACTTTTACGAGTTCTTTTACAACTTC
6919 GGTTCCTTAAAGTATTCAAGA
195 GGTTCCTTAAAGTATTCAAGA
* * * * * * * *
6940 TGGTCCACTCTTTCGAGCAATATTCTAAACATTCCATACTTAGGAAATCGCATAATTTGGTCTAA
1 CGATCCATTCTTTCGAGAAATTTTCTGAACATTCCATACTCAGGAAATCGCATCATTTGGTCTAA
* * * ** *
7005 ATATTTTGTTATTTTGTAAACAAGTTTTGATCTTTGAATTAAAAACTTAAATACGTTAGAATTGT
66 ATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGT
* * ** * * *
7070 TTCTCTCTTGGTTCTTGCATGCACTTCCAAACAAGTCAAACTTTTACGAGTTCCTTCACAAATTC
131 TTCTCTCTTGGTTCTTGCACGAACTTCCAAA-TTGTCAAACTTTTACGAGTTCTTTTACAACTTC
*
7135 GGTTCCTTAAAGTATTCAACA
195 GGTTCCTTAAAGTATTCAAGA
* *
7156 CAATCCATTCCTTT-GAGAAATTTT-TCGAACATTTCA-AGCTC-GAGAAATCGCATCATTTGGT
1 CGATCCATT-CTTTCGAGAAATTTTCT-GAACATTCCATA-CTCAG-GAAATCGCATCATTTGGT
* * * *
7217 CTAAATAGTTTATCATTTTGTAAACAAGTTTTGGTCTTTCAAATAAAAACTTATTTGCGTGAGAA
62 CTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
* ** *** *
7282 TTGTTTCTCTCTTTGTTC-TGCACGAACTTGAAAACACATCAAACTTTTACGAGTTCTTTTATAA
127 TTGTTTCTCTCTTGGTTCTTGCACGAACTTCCAAA-TTGTCAAACTTTTACGAGTTCTTTTACAA
* *
7346 CTTCGATT-TTGTAAAGTATTCAAGA
191 CTTCGGTTCCT-TAAAGTATTCAAGA
* * * * *
7371 CGATCCATTCCTTCGAGAAATTTTCTGAACATACCA-AGCTCAAGAAATCGCATCATTTAGTTTA
1 CGATCCATTCTTTCGAGAAATTTTCTGAACATTCCATA-CTCAGGAAATCGCATCATTTGGTCTA
* **
7435 AATAGTTTGTCATTTTGT-AACGAGTTTTAAT-TTTGAATTAAAAACTTATTTA
65 AATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTA
7487 TGTCCGTTGT
Statistics
Matches: 5856, Mismatches: 1138, Indels: 531
0.78 0.15 0.07
Matches are distributed among these distances:
211 1 0.00
212 138 0.02
213 226 0.04
214 1564 0.27
215 1470 0.25
216 2072 0.35
217 156 0.03
218 5 0.00
219 2 0.00
220 9 0.00
221 3 0.00
222 6 0.00
223 8 0.00
224 11 0.00
225 12 0.00
226 4 0.00
227 5 0.00
228 4 0.00
229 2 0.00
230 4 0.00
233 5 0.00
234 1 0.00
236 3 0.00
239 6 0.00
242 4 0.00
244 1 0.00
245 4 0.00
248 4 0.00
249 2 0.00
250 4 0.00
251 4 0.00
252 3 0.00
253 11 0.00
254 12 0.00
255 9 0.00
256 6 0.00
257 3 0.00
258 7 0.00
259 3 0.00
260 3 0.00
261 10 0.00
262 20 0.00
263 9 0.00
264 20 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.40
Consensus pattern (215 bp):
CGATCCATTCTTTCGAGAAATTTTCTGAACATTCCATACTCAGGAAATCGCATCATTTGGTCTAA
ATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGT
TTCTCTCTTGGTTCTTGCACGAACTTCCAAATTGTCAAACTTTTACGAGTTCTTTTACAACTTCG
GTTCCTTAAAGTATTCAAGA
Found at i:1156 original size:430 final size:429
Alignment explanation
Indices: 13--7486 Score: 6515
Period size: 430 Copynumber: 17.3 Consensus size: 429
3 GTTTTCAAAG
* * * * * * * *
13 CGATCCATTCCTTCGAGAAATTTT-TCAAACTTTCCTTACTCTGTAAATCGCATCGTTTGGTTTA
1 CGATCCATTCCTTCGAGAAATTTTCT-GAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTA
* * *
77 AATAGTTTGTC-TGTTTGTAAACAAGTTTTAGTCTTTGAATTACAAACTTATTTACCTGAGAATT
65 AATAGTTTGTCAT-TTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATT
* * * * *
141 GTCTCTCTCTTGGTTCATGGATGAACTTCCGCACTTGTCAAACTTTTACGAGTTCTTTTACGACT
129 GTTTCTCTCTTGGTTC-TTGACGAACTTCTGCACTTGTCAAACTTTTACGAGTTCTTTTACAACT
* * * * * *
206 TCGGTTACTTAAAGTTTTCAGGACGATCCATTCCTTCGAGAAATTTTCTGAACATTTCATGCTCG
193 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTCTGAACATTCCATACTCA
* * * * *
271 AGAAATCGCATCATTTGGTCTAAA-ATTTTGTCAAATTT-TAAAAAACTTTTGGTTTTTGAATTA
258 AGAAATCGCATCATTTGGTCTAAATAGTTTGTC-ATTTTGTAAACAAGTTTTGGTCTTTGAATTA
* * * * * * * *
334 CAAACTTATTTGCATTAGAATT-TTTCTCT-TAGTTCTTGGACGAACTTCCGAACTTGTCAAACT
322 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGT-TTGCACGAACTTCCAAACTTGTCAAACT
397 TTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAG-
386 TTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
* * * * * *
440 CTGATCCATTCTTTCGAGCAATATTCTGAACATTCCATACTCAGGAAATCGTATAATTTGGTCTA
1 C-GATCCATTCCTTCGAGAAATTTTCTGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTA
* * * * *
505 AATATTTTGTTATTTTGTAAACAAGTTTTGGTCTTGGAATTAAAAACTTAATTACGTTAGAATTG
65 AATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG
* * * *
570 TTTCTCTCTTGGTTCTTGCACAAACTTC--CAAATTAGTCAAACTTTTACGAGTTCCTTCACAAC
130 TTTCTCTCTTGGTTCTTG-ACGAACTTCTGC-ACTT-GTCAAACTTTTACGAGTTCTTTTACAAC
* * * * * * * *
633 TTCTGTCCCTTGAAGTATTCAAGACAATCCATTCCTTTGAGCAATTTT-TCGAACATTTCATGCT
192 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTCT-GAACATTCCATACT
* ** * * *
697 CGAGAAATCGCATCATTTGGTCTAAATAGTTTACCATTTTTTAAACAAGTTTTTGTCTTTGAAAT
256 CAAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATT
** * * * *
762 AAAAACTTACCTAGGTGGGAATTGTTTCTCTCTTGGATTTGCACGAACTTCAAAACATGTCAAAC
321 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGG-TTTGCACGAACTTCCAAACTTGTCAAAC
* *
827 TTTTACGAGTTCTTTTATAACTTTGGTT-TTGTAAAGTATTCAAGA
385 TTTTACGAGTTCTTTTATAACTTCGGTTCCT-TAAAGTATTCAAGA
* * * * * *
872 CGATCCGTTCCTTCGAGAAATTTACTGAACATACCTTGCTCAGGAAATCGCATCATTTAGTTTAA
1 CGATCCATTCCTTCGAGAAATTTTCTGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAA
* ** * *
937 ATAGTTTGTCATTTTGT-AGCAAGTTTTTAAT-TTTGAATTAAAAACATATTTACATGAGAATTG
66 ATAGTTTGTCATTTTGTAAACAAG-TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG
* * * * * * ** *
1000 TTTCTCTCTTGGTTCTTAGATGTACTTCTGCATTTATGAGACTTTTACGACCTCTTTTAAAACTT
130 TTTCTCTCTTGGTTCTT-GACGAACTTCTGCACTTGTCAAACTTTTACGAGTTCTTTTACAACTT
* * * * *
1065 TGGTTCATTAAAGTGTTTAAGACGATCCCTTCCTTCGAGAAATTTT-TCGAACATTCCATACTCA
194 CGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTCT-GAACATTCCATACTCA
* * * * *
1129 ATAAATCACATCTTTTGGTTTAAATAGTTTGTCAATTTGTAAACAAG-TTT-GTCTTTGAATTAA
258 AGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAA
* * * * **
1192 AAACTTGTTTACTTGAGAATTGTCTCTCTCTTGGTTCATGGACGAACTTCCGCACTTGTCAAACT
323 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT--TGCACGAACTTCCAAACTTGTCAAACT
** ** * * * *
1257 TTTTTGAGTTCTTTTACGACTTCGAG-TACTTAAAGTTTTTAGGA
386 TTTACGAGTTCTTTTATAACTTCG-GTTCCTTAAAGTATTCAAGA
* ** *
1301 CGATCCATTCCTTCGAGAAATTTTCTTAACATTCCATGCTTGGGAAATCGGATCATTTGGTCTAA
1 CGATCCATTCCTTCGAGAAATTTTCTGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAA
* * * * * *
1366 ATAGTTTGTCATTTTTTAAACAACTTTTGGTTTTTGAATTATAAACTTATTTGCATGAGAATT-T
66 ATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGT
* * * * * *
1430 TT-TCTCTTAGTTCATGGACAAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
131 TTCTCTCTTGGTTC-TTGACGAACTTCTGCACTTGTCAAACTTTTACGAGTTCTTTTACAACTTC
* * * * *
1494 GGTTCCTTGAAGTATTCAAG-CTGATCCATTCTTTTGAGCAATATTCTGAACATTCCATACTCAA
195 GGTTCCTTAAAGTATTCAAGAC-GATCCATTCCTTCGAGAAATTTTCTGAACATTCCATACTCAA
*** * * *
1558 GAAATCATGTAATTTGGTCTAAATATTTTGTTATTTTGTAAACAAGTTTTGGTCTTTGAATTAAA
259 GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAA
* * * * *
1623 AACTTAATTACGTTAGAATTGTTTCTCTTTTGGTTCTTGC-CGGAGCTTCCAAACTAGTCAAACT
324 AACTTATTTACGTGAGAATTGTTTCTCTCTTGG-T-TTGCAC-GAACTTCCAAACTTGTCAAACT
* * * * * *
1687 TTTACGAGTTCCTTCACAACTTTGATTCCTTAATGTATTCAAGA
386 TTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
* * * * *
1731 CAATCCATTCCTTTGAGCAATTTT-TCGAACATTTCATGCTC-GAGAAATCCCATC-TTCTGGTC
1 CGATCCATTCCTTCGAGAAATTTTCT-GAACATTCCATGCTCAG-GAAATCGCATCATT-TGGTC
** * * *
1793 TAAATAGTTTAACATTTTGTAAACAAGTTTTGGTCTTTGAAATAAAAACTCACTTACGTGAGAAT
63 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
** * *** * * * *
1858 TGTTTCTCTCTTGGTTCTACACAAACTTCAAAACATGTCAAACTTTTACAAGTTCTTTTATATCT
128 TGTTTCTCTCTTGGTTCTTGACGAACTTCTGCACTTGTCAAACTTTTACGAGTTCTTTTACAACT
* * * * * *
1923 TCGGATT--TGTAAAGTAGTCAAGATGATCCGTTCCTTCGAGAATTTTTCTGAACATACCATGCT
193 TCGG-TTCCT-TAAAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTCTGAACATTCCATACT
* * ** * ** **
1986 CAGGAAATCACATCATTTACTTTAAATAGTTTGTCATTTTGT-AACAAGTTTTAATCTTTTTATT
256 CAAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATT
**** * * * * * ** * ***
2050 ATTTCGCATCATTTA-GTTTA-AATAGTTTGTCAT-TTTG-TAACAAGCTTTAATCTT-TTTA-T
321 A-AAAAC-TTATTTACG-TGAGAATTGTTTCTC-TCTTGGTTTGC-A-C--GAA-CTTCCAAACT
* * * * * *
2109 TGTTTAATACTTATTTACATGAGAATTGTTTCTCTCTTGGT-TCTTAGGTGCACTTCTACATTTG
377 TG-TCAA-AC-T-TTTAC----G-A--G-TTCT-T-TT-ATAACTTCGGTTC-C-T-TA-A--AG
* *
2173 TGAAACTTTTACGA
421 T---A--TTCAAGA
* ** * *** * * * ** *
2187 GCTGTTTTAAAACTTCGGTTCCTTAAAGTGTT-T-AAGTCAATCCATTCCTAACATTCCATACTC
1 -C-G--AT-CCA-TTC-CTTCGAGAAA-TTTTCTGAA--CATTCCA-TGCT--CA--GGA-AATC
* **** * * *
2250 AGTAAATCGCATCATTTGGTTTAAATAGTTTGTCAATTTGTAAACAAGTTTTAGTCTTTGAATTA
50 -G--CAT--CATTTGGT---CTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA
* * * * *
2315 AAAACTTATTT-CCTGAGAATTGTCTC-CTTGTTGGCTCATTGACGAACTTTTGCACTTGTCAAA
107 AAAACTTATTTACGTGAGAATTGTTTCTC-TCTTGGTTC-TTGACGAACTTCTGCACTTGTCAAA
* * * * *
2378 CTTTTACGAGTTCTTTTACGACTTCGGGTACTTAGAA-TTTTCAGGACGATCCATTCCTTCGAGA
170 CTTTTACGAGTTCTTTTACAACTTCGGTTCCTTA-AAGTATTCAAGACGATCCATTCCTTCGAGA
* * ** * *
2442 AATTTTCTGAACATTCAATGCTCGGGAAATCGTATCATTTGGTCTAAATAGTTTGTCATTTTTTA
234 AATTTTCTGAACATTCCATACTCAAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* * * * * * * *
2507 AAC-AGCTTTTGGT-TTTAAAATTATAGACTTATTTGCATGAGAATTGTTTCTC-ATAGTTCTTG
299 AACAAG-TTTTGGTCTTT-GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGT-TTG
* * *
2569 GACGAACTTCCGAACTTGTCAAACTTTTACGAATTCTTTTATAACTTCGGTTCCTTAAAGTATTC
361 CACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTC
2634 AAGA
426 AAGA
* * * * * * *
2638 TGATCCATTCTTTCGAGCAATATTCTGAACATTCCATACTCAGGATATCGCATAATTTGGTCTAA
1 CGATCCATTCCTTCGAGAAATTTTCTGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAA
* * * * *
2703 ATATTTTGTTATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAATTTAATTACGTTAGAATTGT
66 ATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGT
* * * *** * * * * *
2768 TTCTCTCTTGGTTATTGCATGCACTTCCAAACTAGTCATACTTTTATGAGTTCCTTCACAACTTC
131 TTCTCTCTTGGTTCTTG-ACGAACTTCTGCACTTGTCAAACTTTTACGAGTTCTTTTACAACTTC
* * * * *
2833 GGTTCCTTAAAGTATTCAAGACAATCCATTCCTTTGAGCAATTTTCTGAACATTTCA-AGCTCGA
195 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTCTGAACATTCCATA-CTCAA
* * * *
2897 GAAATCGCATCATTTGATCTAAATAGTTTATCATTTTGTAAACATGTTTTGGTCTTTGAAATAAA
259 GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAA
* * * * ** ** *
2962 AACTCATTTGCGTGAGAATTGTTTCTCTCTTCGTTCTGCATGAACTTGAAAACACGTTAAACTTT
324 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT-TGCACGAACTTCCAAACTTGTCAAACTTT
* * **
3027 TACGAGTTCTTTTATAACTTTGGTT-TTGTACCGTATTCAAGA
388 TACGAGTTCTTTTATAACTTCGGTTCCT-TAAAGTATTCAAGA
* * * * * * *
3069 CGATTCATTCCTTCGAGAAATTTTTTGAACATACCAAGCTCAAGAAATCGCATCATTTAGTTTAA
1 CGATCCATTCCTTCGAGAAATTTTCTGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAA
* ** *
3134 ATAGTTTGTCATTTTGT-AACTAGTTTTAAT-TTTGAATTAAAAACTTATTTACATGAGAATTGT
66 ATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGT
* * * * * * *
3197 TTCTATCTTGGTTCTTAGATGTACTTCTGCATTTGTGAAACTTTTACGAGCTCTTTTAAAACTTC
131 TTCTCTCTTGGTTCTT-GACGAACTTCTGCACTTGTCAAACTTTTACGAGTTCTTTTACAACTTC
* * * * * *
3262 GGTTCCTTAAAGTGTTTAGGACGATCCGTTTCTTCGAGAAATTTT-TCGAACATTGCATACTC-A
195 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTCT-GAACATTCCATACTCAA
* * * * *
3325 GTAAATCGCATCATTTGGTTTAAATAGTTTTTAAATTTGTAAACAAGTTTTAGTCTTTGAATTAA
259 G-AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAA
* * * **
3390 AAACTTATTTACCTGAGAATTGTCTCTCTCTTGGTTCATGGACGAACTTCCGCACTTGTCAAACT
323 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT--TGCACGAACTTCCAAACTTGTCAAACT
* * * *
3455 TTTACGAGTTCTTTTACAACTTCGGGTACTTAAAG-ATTTCAGGA
386 TTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA-TTCAAGA
* * * * *
3499 CGAACCATTCCTTCGAGAAATTTTCTTAACATTCCATGTTTAGGAAATTGCATCATTTGGTCTAA
1 CGATCCATTCCTTCGAGAAATTTTCTGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAA
* * * * * * *
3564 ATAGTTTGTCATTTTTTAAACAACTTTTGGTTTTTGAATTATAAACTTATTTGCATGAGAATTGA
66 ATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGT
* * * * * *
3629 TTCT-T-TTAGTTCTTGGATGAACTT-TCGAACTTGTCAAACTTTTGCGAGTTCCTTTATAACTT
131 TTCTCTCTTGGTTCTT-GACGAACTTCT-GCACTTGTCAAACTTTTACGAGTTCTTTTACAACTT
* * * * * *
3691 CGGTTCCTTAAAGTATTCAAGATGATCCACTCTTTCGAGTAATATTCTGAACATTTCATACTCAA
194 CGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTCTGAACATTCCATACTCAA
* * * *
3756 GAAATCGCATAATTTGGTCTAAATATTTTTTTATTTTGTAAACAAGTTTTGGTCTTTGAATTAAA
259 GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAA
* * * * * * *
3821 AACTTAATTACGTTAGAATTTTTTCTCTCTTGGTTATTGCATGCACTTCCAAACTAGTCATACTT
324 AACTTATTTACGTGAGAATTGTTTCTCTCTTGG-T-TTGCACGAACTTCCAAACTTGTCAAACTT
* * *
3886 TTACGAGTTCCTTCACAACTTCGGTTCCTTAAAGTATTCAAGA
387 TTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
* * * * *
3929 CAATCCATTCCTTTGAGCAATTTTCTGAACATTTCAAT-CTCAAGAAATCGCATCATTTGGTCTA
1 CGATCCATTCCTTCGAGAAATTTTCTGAACA-TTCCATGCTCAGGAAATCGCATCATTTGGTCT-
* * * * *
3993 AAATAGTTTATCATTTTGTAAACATGTTTTGGTCTTTGAAATAAAAACTCATTTGCGTGAGAATT
64 AAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATT
* ** * ** *
4058 GTTTCTCTCTTTGTTC-TGCACGAACTTGAGAACACGTCAAACTTTTACGAGTTCTTTTATAACT
129 GTTTCTCTCTTGGTTCTTG-ACGAACTTCTGCACTTGTCAAACTTTTACGAGTTCTTTTACAACT
* * ** * *
4122 TTGGTT-TTGTACCGTATTCAAGACGATCCATTCCTTTGAGAAAGTTTT-TGAACATACCA-AGC
193 TCGGTTCCT-TAAAGTATTCAAGACGATCCATTCCTTCGAGAAA-TTTTCTGAACATTCCATA-C
* * * **
4184 TCAAGAAATCGCATCATTTAGTTTAAATAGTTTGTCATTTTGT-AACTAGTTTTAAT-TTTGAAT
255 TCAAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAAT
* * * * *** * *
4247 TAAAAACTTATTTACATGAGAATTGTTTCTATCTTGGTTCTTAG-ATGTACTTCTGCATTTGTGA
320 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGG-T-TT-GCACGAACTTCCAAACTTGTCA
* * * * * *
4311 AAATTTTACGAGCTCTTTTAAAACTTCGGTTCCTTAAAGTGTTTAGGA
382 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
* * * * * *
4359 CGATCCGTTCCTTCGAGAAATTTTCCGAACATTGCATACTCAGTAAATCGCATCATTTGGTTTAA
1 CGATCCATTCCTTCGAGAAATTTTCTGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAA
* * * *
4424 ATAGTTTTTCAATTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACCTGAGAATTGT
66 ATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGT
* *
4489 CTCTCTCTTGGTTCATGGACGAACTT-TCGCACTTGTCAAACTTTTACGAGTTCTTTTACAACTT
131 TTCTCTCTTGGTTC-TTGACGAACTTCT-GCACTTGTCAAACTTTTACGAGTTCTTTTACAACTT
* * * * * * * * * *
4553 CGGGTACTTAAAGTTTTCAGGACGAACCAGTCCTTCAAGAAATTTTCTGAACATTTCAT-GTTAA
194 CGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTCTGAACATTCCATACTCAA
* * * * * *
4617 GGAAATTGCATCATTTGGTCTAAATACTTTGTCATTTTTTAAACAACTTTTGGTTTTTGAATTAT
259 -GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAA
* * * * * * *
4682 AAACTTATTTGCATGAGAATTGATTCT-T-TTAGTTCTTGGACGAACTTCCGAACTTGTCTAACT
323 AAACTTATTTACGTGAGAATTGTTTCTCTCTT-GGT-TTGCACGAACTTCCAAACTTGTCAAACT
** *
4745 TTTGTGAGTTCCTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
386 TTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
* ** * * * *
4789 TGATCCACACTTTCGAGTAATATTT-TGAACATTCCATACTCAGGAAATCGCATAATTTGGTCTA
1 CGATCCATTCCTTCGAGAAAT-TTTCTGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTA
* * * * *
4853 AATATTTTATTATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTAATTACGTTAGAATTG
65 AATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG
* *** * * *
4918 TTTCTCTCTTAGTTCTTGCACGAACTTCCAAACTAGTCAAACTTTTACGAGTTCCTTCACAACTT
130 TTTCTCTCTTGGTTCTTG-ACGAACTTCTGCACTTGTCAAACTTTTACGAGTTCTTTTACAACTT
** * * * * ** *
4983 CGGTTCCTTAAAGTATTCAAGATAATCCATTCCTTTGAGCAATTTTGTGAACATTTCACGCTCGA
194 CGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTCTGAACATTCCATACTCAA
* * * * * * *
5048 GAAATTGCAACGTTTGGTCTAAATAGTTTATCATTTTGTAAACAAGTTTTTGTTTTTGAAATAAA
259 GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAA
* * *
5113 AACATATTTACGTGAGAATTGTTTCTCTCTTGGTTCTGCACGAACTTCAAAACCTGTCAAACTTT
324 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT-TGCACGAACTTCCAAACTTGTCAAACTTT
* *
5178 TACGAGTTCTTTTATAACTTCGGTT-TTGTAAAGTTTTCAAGA
388 TACGAGTTCTTTTATAACTTCGGTTCCT-TAAAGTATTCAAGA
* * * * *
5220 CGATCCATTCGTTCAAGAAATTTTCTGAACATACCATGCTCAGGAAATCGCATCATTTAGTTTAA
1 CGATCCATTCCTTCGAGAAATTTTCTGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAA
** * * *
5285 ATAGTTTGTCATTTTGT-AACAAGTTTTAATCATTGAATTAAAAACTGATTTACATGAGAATTGT
66 ATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGT
* * * * * * * *
5349 TTCTCTCTTGGTTCTTAGATGTAGTTCTGCATTTGTGAAACTTTTTCGAGCTCTTTTAAAACTTC
131 TTCTCTCTTGGTTCTT-GACGAACTTCTGCACTTGTCAAACTTTTACGAGTTCTTTTACAACTTC
* * * *
5414 GGTTCCTTAAAGTGTTTAAGACGATCCCTTCCTTCGAGAAATTTT-TCGAACATTGCATACTC-A
195 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTCT-GAACATTCCATACTCAA
* * * *
5477 GTAAATCGCATAATTTGGTTTAAATAGTTTGTCAATTTGTAAACAAG-TTTAGTCTTTGAATTAA
259 G-AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAA
* * * * * **
5541 AAACTTATTTACCTAAGAATTGTCTCTCTCTTGGTTCATGGACGAACTTACGCACTTGTCAAACT
323 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT--TGCACGAACTTCCAAACTTGTCAAACT
* *** * * *
5606 TTTACGACTTCTTTTACGGCTTCGAG-TACTTAAAGTTTTCAGGA
386 TTTACGAGTTCTTTTATAACTTCG-GTTCCTTAAAGTATTCAAGA
* * * *
5650 TGATCCATTCCTTCGAGAAATTTTCAGAACATTTCATGCT-AGGGAAATCGCATAATTTGGTCTA
1 CGATCCATTCCTTCGAGAAATTTTCTGAACATTCCATGCTCA-GGAAATCGCATCATTTGGTCTA
* * * * * *
5714 AATAGATTGTCATTTTTTTAAACAACTTTTGG-CTCTTGAATTATAAACTTATTTGCATGAGAAT
65 AATAGTTTGTCA-TTTTGTAAACAAGTTTTGGTCT-TTGAATTAAAAACTTATTTACGTGAGAAT
* * * *
5778 TG-TT-TCTCTTAGTTCTTGGACGAACTTCTGAACTTATCAAACTTTTACGAGTTCTTTTATAAC
128 TGTTTCTCTCTTGGTTCTT-GACGAACTTCTGCACTTGTCAAACTTTTACGAGTTCTTTTACAAC
* * * * * * * *
5841 TTCGGTTCCATAGAGTATTCAAGATGATCCATTCTTTCGAGCAATATTCTGAACATTCCATTCCC
192 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTCTGAACATTCCATACTC
* * ** * * *
5906 AGGAAATCGCATAATTTCATCTAAATATTTTGTTATTTTGTAAACAAGTTTTGGACTTTGAATTA
257 AAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA
* * *
5971 AAAACTTAATTACGTTAGAATTGTTTCTCTCTTGGTTTTTGCACGAACTTCCAAACTAGTCAAAC
322 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGG--TTTGCACGAACTTCCAAACTTGTCAAAC
* * *
6036 TTTTACGAGTTCCTTCACAACTTCGGTTCCTTAAAGTATTCAAGA
385 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
* * * * * *
6081 CAATCCATTTCTTTGAGCAATTTTTTGAACATTTCATGCTC-GAGAAATCGCATCATTTGGTCTA
1 CGATCCATTCCTTCGAGAAATTTTCTGAACATTCCATGCTCAG-GAAATCGCATCATTTGGTCTA
* * *
6145 AATAGTTTATCATTTTGTAAACAAGTTTTGGTCTTTAAAATAAAAACTTATTTACGTGAGAATTG
65 AATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG
* *** * * * *
6210 TTTCTCTCTTGGCTC-TGCACGAACTTCAAAACATGTCAAAGTTTTACGAGTTCTTTTATAAGTT
130 TTTCTCTCTTGGTTCTTG-ACGAACTTCTGCACTTGTCAAACTTTTACGAGTTCTTTTACAACTT
* * * * * *
6274 AGGTT-TTGTAAAGTATTCAAGATGATCCATTCGTTCGAGAAATTTTCTGAACATACCATGCTCA
194 CGGTTCCT-TAAAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTCTGAACATTCCATACTCA
* * ** * ** **
6338 GGAAAT-GCGTCATTTATTTTAAATAGTTTGTCATTTTGT-AGTAAGTTTTAATCTTTGAATTAA
258 AGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAA
* * * * * *** * *
6401 AAACTTATTTACTTGAGAATTGTTTCTCTATTGGTTCTTCGATGTACTTCTGCATTTGTGAAACT
323 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT-TGC-ACGAACTTCCAAACTTGTCAAACT
* * * * *
6466 TTTACGAGCTCTTTTAAAACATCGGTTCCTTAAAGTGTTTAAGA
386 TTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
* ** * * * * * * *
6510 CGATCCGTTCCCCCGAGAAATTTT-TCGAACATTGCTTACTTAGTAAATCGCATCATTTGATTTA
1 CGATCCATTCCTTCGAGAAATTTTCT-GAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTA
* * * * * *
6574 AATAGTTTGTCAATTTATGAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACTTGAGAGTTG
65 AATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG
* ** * * *
6639 TCTT-TCTCTTGGTTCATGGACGAACTTCCACACTTGTCAAACTTTAAAGAGTTCTTTTACGACT
130 T-TTCTCTCTTGGTTC-TTGACGAACTTCTGCACTTGTCAAACTTTTACGAGTTCTTTTACAACT
* * * *
6703 TCGGGTACC-TAAAGTTTTCAGGACGATCCATTCCTTCGAGAAATTTTCTGAACATTCCATGCTC
193 TC-GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTCTGAACATTCCATACTC
** * * * *
6767 GGGAAATCGCATCATTTGATCTAAATAGTTTGTCATTTTTTAAACAACTTTTGGTTTTTGAATTA
257 AAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA
* * * * * *
6832 TAAACTTATTTGCATGAGAATTG-TT-TCTCTTAGTTCATGGACGAACTTCCCAACTTGTCAAAC
322 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT--TGCACGAACTTCCAAACTTGTCAAAC
*
6895 TTTTACGAGTTCTTTTACAACTTCGGTTCCTTAAAGTATTCAAGA
385 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
* * * * * * * * * *
6940 TGGTCCACTCTTTCGAGCAATATTCTAAACATTCCATACTTAGGAAATCGCATAATTTGGTCTAA
1 CGATCCATTCCTTCGAGAAATTTTCTGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAA
* * * ** *
7005 ATATTTTGTTATTTTGTAAACAAGTTTTGATCTTTGAATTAAAAACTTAAATACGTTAGAATTGT
66 ATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGT
* * *** ** * * *
7070 TTCTCTCTTGGTTCTTGCATGCACTTCCAAACAAGTCAAACTTTTACGAGTTCCTTCACAAATTC
131 TTCTCTCTTGGTTCTTG-ACGAACTTCTGCACTTGTCAAACTTTTACGAGTTCTTTTACAACTTC
* * * * *
7135 GGTTCCTTAAAGTATTCAACACAATCCATTCCTTTGAGAAATTTT-TCGAACATTTCA-AGCTCG
195 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTCT-GAACATTCCATA-CTCA
* * *
7198 AGAAATCGCATCATTTGGTCTAAATAGTTTATCATTTTGTAAACAAGTTTTGGTCTTTCAAATAA
258 AGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAA
* * ** ***
7263 AAACTTATTTGCGTGAGAATTGTTTCTCTCTTTGTTCTGCACGAACTTGAAAACACATCAAACTT
323 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT-TGCACGAACTTCCAAACTTGTCAAACTT
* *
7328 TTACGAGTTCTTTTATAACTTCGATT-TTGTAAAGTATTCAAGA
387 TTACGAGTTCTTTTATAACTTCGGTTCCT-TAAAGTATTCAAGA
* * * * *
7371 CGATCCATTCCTTCGAGAAATTTTCTGAACATACCAAGCTCAAGAAATCGCATCATTTAGTTTAA
1 CGATCCATTCCTTCGAGAAATTTTCTGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAA
* **
7436 ATAGTTTGTCATTTTGT-AACGAGTTTTAAT-TTTGAATTAAAAACTTATTTA
66 ATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTA
7487 TGTCCGTTGT
Statistics
Matches: 5630, Mismatches: 1197, Indels: 438
0.77 0.16 0.06
Matches are distributed among these distances:
426 1 0.00
427 12 0.00
428 413 0.07
429 833 0.15
430 2564 0.46
431 1094 0.19
432 315 0.06
433 16 0.00
434 3 0.00
435 5 0.00
436 1 0.00
437 2 0.00
438 1 0.00
439 1 0.00
440 3 0.00
442 4 0.00
443 12 0.00
444 7 0.00
445 12 0.00
446 2 0.00
447 2 0.00
448 2 0.00
449 2 0.00
451 8 0.00
453 1 0.00
454 1 0.00
456 7 0.00
457 1 0.00
458 1 0.00
459 2 0.00
460 2 0.00
461 3 0.00
462 14 0.00
463 5 0.00
464 13 0.00
465 3 0.00
467 2 0.00
468 1 0.00
469 1 0.00
470 3 0.00
472 5 0.00
473 3 0.00
474 5 0.00
475 8 0.00
476 5 0.00
477 30 0.01
478 183 0.03
479 16 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.40
Consensus pattern (429 bp):
CGATCCATTCCTTCGAGAAATTTTCTGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAA
ATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGT
TTCTCTCTTGGTTCTTGACGAACTTCTGCACTTGTCAAACTTTTACGAGTTCTTTTACAACTTCG
GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTCTGAACATTCCATACTCAAGA
AATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAA
CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTTGCACGAACTTCCAAACTTGTCAAACTTTTAC
GAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
Found at i:2070 original size:60 final size:60
Alignment explanation
Indices: 1996--2109 Score: 210
Period size: 60 Copynumber: 1.9 Consensus size: 60
1986 CAGGAAATCA
*
1996 CATCATTTACTTTAAATAGTTTGTCATTTTGTAACAAGTTTTAATCTTTTTATTATTTCG
1 CATCATTTACTTTAAATAGTTTGTCATTTTGTAACAAGCTTTAATCTTTTTATTATTTCG
*
2056 CATCATTTAGTTTAAATAGTTTGTCATTTTGTAACAAGCTTTAATCTTTTTATT
1 CATCATTTACTTTAAATAGTTTGTCATTTTGTAACAAGCTTTAATCTTTTTATT
2110 GTTTAATACT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
60 52 1.00
ACGTcount: A:0.27, C:0.11, G:0.09, T:0.53
Consensus pattern (60 bp):
CATCATTTACTTTAAATAGTTTGTCATTTTGTAACAAGCTTTAATCTTTTTATTATTTCG
Found at i:3489 original size:645 final size:646
Alignment explanation
Indices: 13--7486 Score: 6324
Period size: 645 Copynumber: 11.5 Consensus size: 646
3 GTTTTCAAAG
* * * * * * *
13 CGATCCATTCCTTCGAGAAATTTT-TCAAACTTTCCTTACTCTGTAAATCGCATCGTTTGGTTTA
1 CGATCC-TTCCTTCGAGAAATTTTCT-GAACATTCCATACTCAGGAAATCGCATCATTTGGTCTA
* * *
77 AATAGTTTGTC-TGTTTGTAAACAAGTTTTAGTCTTTGAATTACAAACTTATTTACCTGAGAATT
64 AATAGTTTGTCAT-TTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATT
* * * ** *
141 GTCTCTCTCTTGGTTCATGGATGAACTTCCGCACTTGTCAAACTTTTACGAGTTCTTTTACGACT
128 GTTTCTCTCTTGGTTCATGCACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTACAACT
* * * * *
206 TCGGTTACTTAAAGTTTTCAGGACGATCCATTCCTTCGAGAAATTTTCTGAACATTTCATGCTCG
193 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTCTGAACATTCCAAGCTCG
* * * * * *
271 AGAAATCGCATCATTTGGTCTAAA-ATTTTGTCAAATTT-TAAAAAACTTTTGGTTTTTGAATTA
258 AGAAATCGCATCATTTGATCTAAATAGTTTGTC-ATTTTGTAAACAAGTTTTGGTCTTTGAATTA
* * * * * *
334 CAAACTTATTTGCATTAGAA-T-TTT-TCTCTTAGTTCTTGGACGAACTTCCGAACTTGTCAAAC
322 AAAACTTATTTACATGAGAATTGTTTCTCTCTTAGTTCTTGCACGAACTTCCAAACATGTCAAAC
* * * *
396 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGCTGATCCATTCTTTCGAGCAA
387 TTTTACGAGTTCTTTTACAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGAAA
* * * * * * *
461 TATTCTGAACATTCCATA-CTCAGGAAATCGTATAATTTGGTCTAAATATTTTGTTATTTTGTAA
452 TTTTCTGAACATTTCA-AGCTCAAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* * * * *
525 ACAAGTTTTGGTCTTGGAATTAAAAACTTAATTACGTTAGAATTGTTTCTCTCTTGGTTCTTGCA
516 ACAAGTTTTGATCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTG-A
* * * * * * * * *
590 CAAACTTC-CAAATTAGTCAAACTTTTACGAGTTCCTTCACAACTTCTGTCCCTTGAAGTATTCA
580 CGAACTTCTGAACTT-GTCAAACTTTTACGAGTTCTTTTAAAACTTCGGTTCCTTAAAGTATTCA
654 AGA
644 AGA
* * * * *
657 CAATCCATTCCTTTGAGCAATTTT-TCGAACATTTCATGCTC-GAGAAATCGCATCATTTGGTCT
1 CGATCC-TTCCTTCGAGAAATTTTCT-GAACATTCCATACTCAG-GAAATCGCATCATTTGGTCT
** * * * ** * *
720 AAATAGTTTACCATTTTTTAAACAAGTTTTTGTCTTTGAAATAAAAACTTACCTAGGTGGGAATT
63 AAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATT
* * *
785 GTTTCTCTCTTGGATT--TGCACGAACTTCAAAACATGTCAAACTTTTACGAGTTCTTTTATAAC
128 GTTTCTCTCTTGG-TTCATGCACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTACAAC
* * * * * **
848 TTTGGTT-TTGTAAAGTATTCAAGACGATCCGTTCCTTCGAGAAATTTACTGAACATACCTTGCT
192 TTCGGTTCCT-TAAAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTCTGAACATTCCAAGCT
* * **
912 C-AGGAAATCGCATCATTT-AGTTTAAATAGTTTGTCATTTTGT-AGCAAGTTTTTAAT-TTTGA
256 CGA-GAAATCGCATCATTTGA-TCTAAATAGTTTGTCATTTTGTAAACAAG-TTTTGGTCTTTGA
* * * * ***
973 ATTAAAAACATATTTACATGAGAATTGTTTCTCTCTTGGTTCTTAG-ATGTACTTCTGCATTTAT
318 ATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTAGTTCTT-GCACGAACTTC--CAAACAT
* ** * * * * * * *
1037 G--AGACTTTTACGACCTCTTTTAAAACTTTGGTTCATTAAAGTGTTTAAGACGATCCCTTCCTT
380 GTCAAACTTTTACGAGTTCTTTTACAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTT
* * * * *
1100 CGAGAAATTTT-TCGAACATTCCATA-CTCAATAAATCACATCTTTTGGTTTAAATAGTTTGTCA
445 CGAGAAATTTTCT-GAACATTTCA-AGCTCAAGAAATCGCATCATTTGGTCTAAATAGTTTGTCA
* * * *
1163 ATTTGTAAACAAG-TTTG-TCTTTGAATTAAAAACTTGTTTACTTGAGAATTGTCTCTCTCTTGG
508 TTTTGTAAACAAGTTTTGATCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGG
* * * ** ** *
1226 TTCATGGACGAACTTCCGCACTTGTCAAACTTTTTTGAGTTCTTTTACGACTTCGAG-TACTTAA
573 TTC-TTGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTAAAACTTCG-GTTCCTTAA
* * *
1290 AGTTTTTAGGA
636 AGTATTCAAGA
* * ** *
1301 CGATCCATTCCTTCGAGAAATTTTCTTAACATTCCATGCTTGGGAAATCGGATCATTTGGTCTAA
1 CGATCC-TTCCTTCGAGAAATTTTCTGAACATTCCATACTCAGGAAATCGCATCATTTGGTCTAA
* * * * * *
1366 ATAGTTTGTCATTTTTTAAACAACTTTTGGTTTTTGAATTATAAACTTATTTGCATGAGAATT-T
65 ATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGT
* * * * *
1430 TT-TCTCTTAGTTCATGGACAAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
130 TTCTCTCTTGGTTCATGCACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTACAACTTC
* * * * * *
1494 GGTTCCTTGAAGTATTCAAG-CTGATCCATTCTTTTGAGCAATATTCTGAACATTCCATA-CTCA
195 GGTTCCTTAAAGTATTCAAGAC-GATCCATTCCTTCGAGAAATTTTCTGAACATTCCA-AGCTCG
*** * * * *
1557 AGAAATCATGTAATTTGGTCTAAATATTTTGTTATTTTGTAAACAAGTTTTGGTCTTTGAATTAA
258 AGAAATCGCATCATTTGATCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAA
* * * * * *
1622 AAACTTAATTACGTTAGAATTGTTTCTCTTTTGGTTCTTGC-CGGAGCTTCCAAAC-TAGTCAAA
323 AAACTTATTTACATGAGAATTGTTTCTCTCTTAGTTCTTGCAC-GAACTTCCAAACAT-GTCAAA
* * * * * ** * *
1685 CTTTTACGAGTTCCTTCACAACTTTGATTCCTTAATGTATTCAAGACAATCCATTCCTTTGAGCA
386 CTTTTACGAGTTCTTTTACAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGAA
* * * **
1750 ATTTT-TCGAACATTTCATGCTCGAGAAATCCCATC-TTCTGGTCTAAATAGTTTAACATTTTGT
451 ATTTTCT-GAACATTTCAAGCTCAAGAAATCGCATCATT-TGGTCTAAATAGTTTGTCATTTTGT
* * * * * **
1813 AAACAAGTTTTGGTCTTTGAAATAAAAACTCACTTACGTGAGAATTGTTTCTCTCTTGGTTCTAC
514 AAACAAGTTTTGATCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTG
* ** * * * * *
1878 ACAAACTTCAAAACATGTCAAACTTTTACAAGTTCTTTTATATCTTCGGATT--TGTAAAGTAGT
579 ACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTAAAACTTCGG-TTCCT-TAAAGTATT
1941 CAAGA
642 CAAGA
* * * * * ** *
1946 TGATCCGTTCCTTCGAGAATTTTTCTGAACATACCATGCTCAGGAAATCACATCATTTACTTTAA
1 CGATCC-TTCCTTCGAGAAATTTTCTGAACATTCCATACTCAGGAAATCGCATCATTTGGTCTAA
** ** **** * *
2011 ATAGTTTGTCATTTTGT-AACAAGTTTTAATCTTTTTATTATTTCGCATCATTTA-GTTTA-AAT
65 ATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA-AAAAC-TTATTTACG-TGAGAAT
* * * * * *** *** *
2073 AGTTTGTCAT-TTTGTAACAAGCTTTAATCTT-TTTA-TTGTTTAATACTTATTTACATGAGAAT
127 TGTTTCTC-TCTTGGT-TCATGCACGAA-CTTCCAAACTTG-TCAA-AC-T-TTTAC----G-A-
**** * * * * * * **
2135 TGTTTCTCTCTTGGTTCTTAGGTGCACTTCTACATTTGTGAAACTTTTACGAGCTGTTTTAAAAC
179 -G-TTCT-T-TTACAACTTCGGTTC-C-T-TA-A--AGT---A--TTCAAGA-C-G--AT-CCA-
* *** * * * * * * *** *
2200 TTCGGTTCCTTAAAGTGTTTAAGTCAATCCATTCCTAA-CATTCCA-TACTCAGTAAATCGCATC
223 TTC-CTTCGAGAAA-T-TTT--CTGAA--CATTCC-AAGC--TCGAGAAATC-G--CATCATTTG
* * *
2263 ATTTGGTTTAAATAGTTTGTCAATTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTT-C
275 ATCT-----AAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTAC
* * * * * **** *
2327 CTGAGAATTGTCTC-CTTGTTGGCTCATTG-ACGAACTTTTGCACTTGTCAAACTTTTACGAGTT
335 ATGAGAATTGTTTCTC-TCTTAGTTC-TTGCACGAACTTCCAAACATGTCAAACTTTTACGAGTT
* * * * * *
2390 CTTTTACGACTTCGGGTACTTAGAA-TTTTCAGGACGATCCATTCCTTCGAGAAATTTTCTGAAC
398 CTTTTACAACTTCGGTTCCTTA-AAGTATTCAAGATGATCCATTCCTTCGAGAAATTTTCTGAAC
** * *
2454 A-TTCAATGCTCGGGAAATCGTATCATTTGGTCTAAATAGTTTGTCATTTTTTAAAC-AGCTTTT
462 ATTTCAA-GCTCAAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG-TTTT
* * * * * * *
2517 GGT-TTTAAAATTATAGACTTATTTGCATGAGAATTG-TT-TCTCATAGTTCTTGGACGAACTTC
525 GATCTTT-GAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTT-GACGAACTTC
* * *
2579 CGAACTTGTCAAACTTTTACGAATTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
588 TGAACTTGTCAAACTTTTACGAGTTCTTTTAAAACTTCGGTTCCTTAAAGTATTCAAGA
* * * * * *
2638 TGATCCATTCTTTCGAGCAATATTCTGAACATTCCATACTCAGGATATCGCATAATTTGGTCTAA
1 CGATCC-TTCCTTCGAGAAATTTTCTGAACATTCCATACTCAGGAAATCGCATCATTTGGTCTAA
* * * * *
2703 ATATTTTGTTATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAATTTAATTACGTTAGAATTGT
65 ATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGT
* * * * * * *
2768 TTCTCTCTTGGTT-ATTGCATGCACTTCCAAACTAGTCATACTTTTATGAGTTCCTTCACAACTT
130 TTCTCTCTTGGTTCA-TGCACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTACAACTT
* * * *
2832 CGGTTCCTTAAAGTATTCAAGACAATCCATTCCTTTGAGCAATTTTCTGAACATTTCAAGCTCGA
194 CGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTCTGAACATTCCAAGCTCGA
* * *
2897 GAAATCGCATCATTTGATCTAAATAGTTTATCATTTTGTAAACATGTTTTGGTCTTTGAAATAAA
259 GAAATCGCATCATTTGATCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAA
* * * * * ** * *
2962 AACTCATTTGCGTGAGAATTGTTTCTCTCTTCGTTC-TGCATGAACTTGAAAACACGTTAAACTT
324 AACTTATTTACATGAGAATTGTTTCTCTCTTAGTTCTTGCACGAACTTCCAAACATGTCAAACTT
* * * ** * *
3026 TTACGAGTTCTTTTATAACTTTGGTT-TTGTACCGTATTCAAGACGATTCATTCCTTCGAGAAAT
389 TTACGAGTTCTTTTACAACTTCGGTTCCT-TAAAGTATTCAAGATGATCCATTCCTTCGAGAAAT
* ** * *
3090 TTTTTGAACATACCAAGCTCAAGAAATCGCATCATTTAGTTTAAATAGTTTGTCATTTTGT-AAC
453 TTTCTGAACATTTCAAGCTCAAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
* * * *
3154 TAGTTTTAAT-TTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTATCTTGGTTCTTAGATG
518 AAGTTTTGATCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTT-GACG
* * * * * * * *
3218 TACTTCTGCATTTGTGAAACTTTTACGAGCTCTTTTAAAACTTCGGTTCCTTAAAGTGTTTAGGA
582 AACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTAAAACTTCGGTTCCTTAAAGTATTCAAGA
* * * *
3283 CGATCCGTTTCTTCGAGAAATTTT-TCGAACATTGCATACTCAGTAAATCGCATCATTTGGTTTA
1 CGATCC-TTCCTTCGAGAAATTTTCT-GAACATTCCATACTCAGGAAATCGCATCATTTGGTCTA
* * * * *
3347 AATAGTTTTTAAATTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACCTGAGAATTG
64 AATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG
* * **
3412 TCTCTCTCTTGGTTCATGGACGAACTTCCGCACTTGTCAAACTTTTACGAGTTCTTTTACAACTT
129 TTTCTCTCTTGGTTCATGCACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTACAACTT
* * * * * * **
3477 CGGGTACTTAAAG-ATTTCAGGACGAACCATTCCTTCGAGAAATTTTCTTAACATTCCATG-TTT
194 CGGTTCCTTAAAGTA-TTCAAGACGATCCATTCCTTCGAGAAATTTTCTGAACATTCCAAGCTCG
* * * * *
3540 AGGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTTTAAACAACTTTTGGTTTTTGAATTA
258 A-GAAATCGCATCATTTGATCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA
* * * * * * * *
3605 TAAACTTATTTGCATGAGAATTGATTCT-T-TTAGTTCTTGGATGAACTTTCGAACTTGTCAAAC
322 AAAACTTATTTACATGAGAATTGTTTCTCTCTTAGTTCTTGCACGAACTTCCAAACATGTCAAAC
* * * * * *
3668 TTTTGCGAGTTCCTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCACTCTTTCGAGTAA
387 TTTTACGAGTTCTTTTACAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGAAA
* * * * *
3733 TATTCTGAACATTTCATA-CTCAAGAAATCGCATAATTTGGTCTAAATATTTTTTTATTTTGTAA
452 TTTTCTGAACATTTCA-AGCTCAAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* * * * * *
3797 ACAAGTTTTGGTCTTTGAATTAAAAACTTAATTACGTTAGAATTTTTTCTCTCTTGGTTATTGCA
516 ACAAGTTTTGATCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTG-A
* * ** * * * * *
3862 TGCACTTCCAAACTAGTCATACTTTTACGAGTTCCTTCACAACTTCGGTTCCTTAAAGTATTCAA
580 CGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTAAAACTTCGGTTCCTTAAAGTATTCAA
3927 GA
645 GA
* * * * *
3929 CAATCCATTCCTTTGAGCAATTTTCTGAACATTTCA-ATCTCAAGAAATCGCATCATTTGGTCTA
1 CGATCC-TTCCTTCGAGAAATTTTCTGAACATTCCATA-CTCAGGAAATCGCATCATTTGGTCT-
* * * * *
3993 AAATAGTTTATCATTTTGTAAACATGTTTTGGTCTTTGAAATAAAAACTCATTTGCGTGAGAATT
63 AAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATT
* * ** *
4058 GTTTCTCTCTTTGTTC-TGCACGAACTT-GAGAACACGTCAAACTTTTACGAGTTCTTTTATAAC
128 GTTTCTCTCTTGGTTCATGCACGAACTTCCA-AACTTGTCAAACTTTTACGAGTTCTTTTACAAC
* * ** * *
4121 TTTGGTT-TTGTACCGTATTCAAGACGATCCATTCCTTTGAGAAAGTTTT-TGAACATACCAAGC
192 TTCGGTTCCT-TAAAGTATTCAAGACGATCCATTCCTTCGAGAAA-TTTTCTGAACATTCCAAGC
* * * **
4184 TCAAGAAATCGCATCATTT-AGTTTAAATAGTTTGTCATTTTGT-AACTAGTTTTAAT-TTTGAA
255 TCGAGAAATCGCATCATTTGA-TCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAA
* * * * *** ** *
4246 TTAAAAACTTATTTACATGAGAATTGTTTCTATCTTGGTTCTTAG-ATGTACTTCTGCATTTGTG
319 TTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTAGTTCTT-GCACGAACTTCCAAACATGTC
* * * * * * * *
4310 AAAATTTTACGAGCTCTTTTAAAACTTCGGTTCCTTAAAGTGTTTAGGACGATCCGTTCCTTCGA
383 AAACTTTTACGAGTTCTTTTACAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGA
* * * * *
4375 GAAATTTTCCGAACATTGCATA-CTC-AGTAAATCGCATCATTTGGTTTAAATAGTTTTTCAATT
448 GAAATTTTCTGAACATTTCA-AGCTCAAG-AAATCGCATCATTTGGTCTAAATAGTTTGTCATTT
* *
4438 TGTAAACAAGTTTT-AGTCTTTGAATTAAAAACTTATTTACCTGAGAATTGTCTCTCTCTTGGTT
511 TGTAAACAAGTTTTGA-TCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTT
* * * * *
4502 CATGGACGAACTT-TCGCACTTGTCAAACTTTTACGAGTTCTTTTACAACTTCGGGTACTTAAAG
575 C-TTGACGAACTTCT-GAACTTGTCAAACTTTTACGAGTTCTTTTAAAACTTCGGTTCCTTAAAG
* *
4566 TTTTCAGGA
638 TATTCAAGA
* * * * ** * *
4575 CGAACCAGTCCTTCAAGAAATTTTCTGAACATTTCATGTTAAGGAAATTGCATCATTTGGTCTAA
1 CGATCC-TTCCTTCGAGAAATTTTCTGAACATTCCATACTCAGGAAATCGCATCATTTGGTCTAA
* * * * * * * *
4640 ATACTTTGTCATTTTTTAAACAACTTTTGGTTTTTGAATTATAAACTTATTTGCATGAGAATTGA
65 ATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGT
* * * * * ** * *
4705 TTCT-T-TTAGTTCTTGGACGAACTTCCGAACTTGTCTAACTTTTGTGAGTTCCTTTATAACTTC
130 TTCTCTCTTGGTTCATGCACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTACAACTTC
* ** * *
4768 GGTTCCTTAAAGTATTCAAGATGATCCACACTTTCGAGTAATATTT-TGAACATTCCATA-CTC-
195 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGAAAT-TTTCTGAACATTCCA-AGCTCG
* * * * *
4830 AGGAAATCGCATAATTTGGTCTAAATATTTTATTATTTTGTAAACAAGTTTTGGTCTTTGAATTA
258 A-GAAATCGCATCATTTGATCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA
* * *
4895 AAAACTTAATTACGTTAGAATTGTTTCTCTCTTAGTTCTTGCACGAACTTCCAAAC-TAGTCAAA
322 AAAACTTATTTACATGAGAATTGTTTCTCTCTTAGTTCTTGCACGAACTTCCAAACAT-GTCAAA
* * * * *
4959 CTTTTACGAGTTCCTTCACAACTTCGGTTCCTTAAAGTATTCAAGATAATCCATTCCTTTGAGCA
386 CTTTTACGAGTTCTTTTACAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGAA
* * * * * * *
5024 ATTTTGTGAACATTTCACGCTCGAGAAATTGCAACGTTTGGTCTAAATAGTTTATCATTTTGTAA
451 ATTTTCTGAACATTTCAAGCTCAAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* * * *
5089 ACAAGTTTTTG-TTTTTGAAATAAAAACATATTTACGTGAGAATTGTTTCTCTCTTGGTTC-TGC
516 ACAAG-TTTTGATCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTG-
** * * * *
5152 ACGAACTTCAAAACCTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT-TTGTAAAGTTTTC
579 ACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTAAAACTTCGGTTCCT-TAAAGTATTC
5216 AAGA
643 AAGA
* * * * * *
5220 CGATCCATTCGTTCAAGAAATTTTCTGAACATACCATGCTCAGGAAATCGCATCATTTAGTTTAA
1 CGATCC-TTCCTTCGAGAAATTTTCTGAACATTCCATACTCAGGAAATCGCATCATTTGGTCTAA
** * * *
5285 ATAGTTTGTCATTTTGT-AACAAGTTTTAATCATTGAATTAAAAACTGATTTACATGAGAATTGT
65 ATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGT
* * * * *** * * * * *
5349 TTCTCTCTTGGTTCTTAG-ATGTAGTTCTGCATTTGTGAAACTTTTTCGAGCTCTTTTAAAACTT
130 TTCTCTCTTGGTTCAT-GCACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTACAACTT
* * * *
5413 CGGTTCCTTAAAGTGTTTAAGACGATCCCTTCCTTCGAGAAATTTT-TCGAACATTGCATA-CTC
194 CGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTCT-GAACATTCCA-AGCTC
* * * * *
5476 -AGTAAATCGCATAATTTGGTTTAAATAGTTTGTCAATTTGTAAACAAG-TTTAGTCTTTGAATT
257 GAG-AAATCGCATCATTTGATCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATT
* * * * * * * ** *
5539 AAAAACTTATTTACCTAAGAATTGTCTCTCTCTTGGTTCATGGACGAACTTACGCACTTGTCAAA
321 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTAGTTCTTGCACGAACTTCCAAACATGTCAAA
* ** * * *
5604 CTTTTACGACTTCTTTTACGGCTTCGAG-TACTTAAAGTTTTCAGGATGATCCATTCCTTCGAGA
386 CTTTTACGAGTTCTTTTACAACTTCG-GTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGA
* * * * * *
5668 AATTTTCAGAACATTTCATGCT-AGGGAAATCGCATAATTTGGTCTAAATAGATTGTCATTTTTT
450 AATTTTCTGAACATTTCAAGCTCA-AGAAATCGCATCATTTGGTCTAAATAGTTTGTCA-TTTTG
* * * * *
5732 TAAACAACTTTTG-GCTCTTGAATTATAAACTTATTTGCATGAGAATTG-TT-TCTCTTAGTTCT
513 TAAACAAGTTTTGATCT-TTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCT
* * * *
5794 TGGACGAACTTCTGAACTTATCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCATAGAGTAT
577 T-GACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTAAAACTTCGGTTCCTTAAAGTAT
5859 TCAAGA
641 TCAAGA
* * * * * * * **
5865 TGATCCATTCTTTCGAGCAATATTCTGAACATTCCATTCCCAGGAAATCGCATAATTTCATCTAA
1 CGATCC-TTCCTTCGAGAAATTTTCTGAACATTCCATACTCAGGAAATCGCATCATTTGGTCTAA
* * * * *
5930 ATATTTTGTTATTTTGTAAACAAGTTTTGGACTTTGAATTAAAAACTTAATTACGTTAGAATTGT
65 ATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGT
** * * *
5995 TTCTCTCTTGGTTTTTGCACGAACTTCCAAACTAGTCAAACTTTTACGAGTTCCTTCACAACTTC
130 TTCTCTCTTGGTTCATGCACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTACAACTTC
* * * * * * *
6060 GGTTCCTTAAAGTATTCAAGACAATCCATTTCTTTGAGCAATTTTTTGAACATTTCATGCTCGAG
195 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTCTGAACATTCCAAGCTCGAG
* * * *
6125 AAATCGCATCATTTGGTCTAAATAGTTTATCATTTTGTAAACAAGTTTTGGTCTTTAAAATAAAA
260 AAATCGCATCATTTGATCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAA
* * * * *
6190 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGCTC-TGCACGAACTTCAAAACATGTCAAAGTTT
325 ACTTATTTACATGAGAATTGTTTCTCTCTTAGTTCTTGCACGAACTTCCAAACATGTCAAACTTT
* * * * *
6254 TACGAGTTCTTTTATAAGTTAGGTT-TTGTAAAGTATTCAAGATGATCCATTCGTTCGAGAAATT
390 TACGAGTTCTTTTACAACTTCGGTTCCT-TAAAGTATTCAAGATGATCCATTCCTTCGAGAAATT
** * * * ** * **
6318 TTCTGAACATACCATGCTCAGGAAAT-GCGTCATTTATTTTAAATAGTTTGTCATTTTGT-AGTA
454 TTCTGAACATTTCAAGCTCAAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
* * * * *
6381 AGTTTTAATCTTTGAATTAAAAACTTATTTACTTGAGAATTGTTTCTCTATTGGTTCTTCGATGT
519 AGTTTTGATCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTT-GACGA
* * * * * * *
6446 ACTTCTGCATTTGTGAAACTTTTACGAGCTCTTTTAAAACATCGGTTCCTTAAAGTGTTTAAGA
583 ACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTAAAACTTCGGTTCCTTAAAGTATTCAAGA
** * * * * * *
6510 CGATCCGTTCCCCCGAGAAATTTT-TCGAACATTGCTTACTTAGTAAATCGCATCATTTGATTTA
1 CGATCC-TTCCTTCGAGAAATTTTCT-GAACATTCCATACTCAGGAAATCGCATCATTTGGTCTA
* * * * * *
6574 AATAGTTTGTCAATTTATGAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACTTGAGAGTTG
64 AATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG
* * * * *
6639 TCTT-TCTCTTGGTTCATGGACGAACTTCCACACTTGTCAAACTTTAAAGAGTTCTTTTACGACT
129 T-TTCTCTCTTGGTTCATGCACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTACAACT
* * * *
6703 TCGGGTACC-TAAAGTTTTCAGGACGATCCATTCCTTCGAGAAATTTTCTGAACATTCCATGCTC
193 TC-GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTCTGAACATTCCAAGCTC
* * * *
6767 GGGAAATCGCATCATTTGATCTAAATAGTTTGTCATTTTTTAAACAACTTTTGGTTTTTGAATTA
257 GAGAAATCGCATCATTTGATCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA
* * * * * *
6832 TAAACTTATTTGCATGAGAATTG-TT-TCTCTTAGTTCATGGACGAACTTCCCAACTTGTCAAAC
322 AAAACTTATTTACATGAGAATTGTTTCTCTCTTAGTTCTTGCACGAACTTCCAAACATGTCAAAC
* * * *
6895 TTTTACGAGTTCTTTTACAACTTCGGTTCCTTAAAGTATTCAAGATGGTCCACTCTTTCGAGCAA
387 TTTTACGAGTTCTTTTACAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGAAA
* * * * * * * *
6960 TATTCTAAACATTCCATA-CTTAGGAAATCGCATAATTTGGTCTAAATATTTTGTTATTTTGTAA
452 TTTTCTGAACATTTCA-AGCTCAAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
** * *
7024 ACAAGTTTTGATCTTTGAATTAAAAACTTAAATACGTTAGAATTGTTTCTCTCTTGGTTCTTGCA
516 ACAAGTTTTGATCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTG-A
* * ** ** * *
7089 TGCACTTCCAAACAAGTCAAACTTTTACGAGTTCCTTCACAAA-TTCGGTTCCTTAAAGTATTCA
580 CGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTA-AAACTTCGGTTCCTTAAAGTATTCA
*
7153 ACA
644 AGA
* * *
7156 CAATCCATTCCTTTGAGAAATTTT-TCGAACATTTCA-AGCTC-GAGAAATCGCATCATTTGGTC
1 CGATCC-TTCCTTCGAGAAATTTTCT-GAACATTCCATA-CTCAG-GAAATCGCATCATTTGGTC
* * * *
7218 TAAATAGTTTATCATTTTGTAAACAAGTTTTGGTCTTTCAAATAAAAACTTATTTGCGTGAGAAT
62 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* ** *** *
7283 TGTTTCTCTCTTTGTTC-TGCACGAACTTGAAAACACATCAAACTTTTACGAGTTCTTTTATAAC
127 TGTTTCTCTCTTGGTTCATGCACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTACAAC
* * *
7347 TTCGATT-TTGTAAAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTCTGAACATACCAAGCT
192 TTCGGTTCCT-TAAAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTCTGAACATTCCAAGCT
* * * **
7411 CAAGAAATCGCATCATTT-AGTTTAAATAGTTTGTCATTTTGT-AACGAGTTTTAAT-TTTGAAT
256 CGAGAAATCGCATCATTTGA-TCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAAT
7473 TAAAAACTTATTTA
320 TAAAAACTTATTTA
7487 TGTCCGTTGT
Statistics
Matches: 5463, Mismatches: 1151, Indels: 433
0.78 0.16 0.06
Matches are distributed among these distances:
641 3 0.00
642 13 0.00
643 379 0.07
644 976 0.18
645 1723 0.32
646 1633 0.30
647 153 0.03
648 13 0.00
649 5 0.00
650 8 0.00
651 5 0.00
652 4 0.00
653 5 0.00
654 6 0.00
655 1 0.00
656 4 0.00
658 4 0.00
659 5 0.00
660 5 0.00
661 12 0.00
662 2 0.00
663 2 0.00
664 1 0.00
665 1 0.00
666 1 0.00
667 7 0.00
669 1 0.00
670 1 0.00
672 6 0.00
674 4 0.00
675 2 0.00
676 2 0.00
677 2 0.00
678 11 0.00
679 5 0.00
680 4 0.00
681 3 0.00
683 4 0.00
684 1 0.00
685 8 0.00
686 4 0.00
687 3 0.00
688 4 0.00
689 5 0.00
690 6 0.00
691 28 0.01
692 150 0.03
693 180 0.03
694 58 0.01
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.40
Consensus pattern (646 bp):
CGATCCTTCCTTCGAGAAATTTTCTGAACATTCCATACTCAGGAAATCGCATCATTTGGTCTAAA
TAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTT
TCTCTCTTGGTTCATGCACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTACAACTTCG
GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTCTGAACATTCCAAGCTCGAGA
AATCGCATCATTTGATCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAA
CTTATTTACATGAGAATTGTTTCTCTCTTAGTTCTTGCACGAACTTCCAAACATGTCAAACTTTT
ACGAGTTCTTTTACAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGAAATTTT
CTGAACATTTCAAGCTCAAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
TTTTGATCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGACGAACT
TCTGAACTTGTCAAACTTTTACGAGTTCTTTTAAAACTTCGGTTCCTTAAAGTATTCAAGA
Found at i:10055 original size:13 final size:11
Alignment explanation
Indices: 10019--10057 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
10009 ATCTCATACT
10019 TTTTG-TTTTC
1 TTTTGCTTTTC
10029 TTTTGCTTTTC
1 TTTTGCTTTTC
10040 TTTTGCTCTCTTC
1 TTTTGCT-T-TTC
10053 TTTTG
1 TTTTG
10058 TGGTTTCTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
10 5 0.19
11 12 0.46
12 1 0.04
13 8 0.31
ACGTcount: A:0.00, C:0.18, G:0.10, T:0.72
Consensus pattern (11 bp):
TTTTGCTTTTC
Found at i:19846 original size:19 final size:20
Alignment explanation
Indices: 19813--19850 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
19803 AAATATTTTT
*
19813 TATTTTTTTTATTTTTCTCA
1 TATTTTTCTTATTTTTCTCA
19833 TATTTTTCTT-TTTTTCTC
1 TATTTTTCTTATTTTTCTC
19851 GACTTTTTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.11, C:0.13, G:0.00, T:0.76
Consensus pattern (20 bp):
TATTTTTCTTATTTTTCTCA
Found at i:25750 original size:50 final size:49
Alignment explanation
Indices: 25667--25761 Score: 138
Period size: 50 Copynumber: 1.9 Consensus size: 49
25657 TGCATGACTT
*
25667 GATTTAATGATGCATTTAACTAACATGGGAGTTACATAATGCATGATAG
1 GATTTAATGATGCATTTAACTAACATGGAAGTTACATAATGCATGATAG
* *
25716 GATTT-ATGATGCATATTTAACTAACATGTAAGTTACTTAATGCATG
1 GATTTAATGATGC--ATTTAACTAACATGGAAGTTACATAATGCATG
25762 TCATTATTTA
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
48 7 0.17
49 5 0.12
50 29 0.71
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.36
Consensus pattern (49 bp):
GATTTAATGATGCATTTAACTAACATGGAAGTTACATAATGCATGATAG
Found at i:25771 original size:50 final size:49
Alignment explanation
Indices: 25649--25779 Score: 133
Period size: 50 Copynumber: 2.7 Consensus size: 49
25639 AACTAATGGA
* * *
25649 TTACTAAATGCATGAC-TTGATTTAATGATGC-ATTTAACTAACATGGGAG
1 TTACTTAATGCATGTCATT-ATTT-ATGATGCAATTTAACTAACATGGAAG
* ** *
25698 TTACATAATGCATGAT-AGGATTTATGATGCATATTTAACTAACATGTAAG
1 TTACTTAATGCATG-TCATTATTTATGATGCA-ATTTAACTAACATGGAAG
*
25748 TTACTTAATGCATGTCATTATTTATTATGCAA
1 TTACTTAATGCATGTCATTATTTATGATGCAA
25780 ACTTAACTGA
Statistics
Matches: 66, Mismatches: 11, Indels: 10
0.76 0.13 0.11
Matches are distributed among these distances:
48 7 0.11
49 18 0.27
50 41 0.62
ACGTcount: A:0.35, C:0.11, G:0.15, T:0.38
Consensus pattern (49 bp):
TTACTTAATGCATGTCATTATTTATGATGCAATTTAACTAACATGGAAG
Found at i:26026 original size:17 final size:17
Alignment explanation
Indices: 25995--26027 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
25985 GTAAAACTTA
25995 TTAAACTAAAATAAAAC
1 TTAAACTAAAATAAAAC
26012 TTAAA-TAAAATTAAAA
1 TTAAACTAAAA-TAAAA
26028 AGTCCTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (17 bp):
TTAAACTAAAATAAAAC
Found at i:26664 original size:15 final size:16
Alignment explanation
Indices: 26644--26680 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
26634 AACATGCGTA
26644 CTCGCATA-TTCCAAG
1 CTCGCATAGTTCCAAG
*
26659 CTCGCA-AGTTCCATG
1 CTCGCATAGTTCCAAG
26674 CTCGCAT
1 CTCGCAT
26681 TATTAGAGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
14 1 0.05
15 18 0.95
ACGTcount: A:0.22, C:0.35, G:0.16, T:0.27
Consensus pattern (16 bp):
CTCGCATAGTTCCAAG
Found at i:30031 original size:26 final size:25
Alignment explanation
Indices: 30002--30060 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 25
29992 AAAAGTGTGT
30002 GAGAAAAATCAGAAAACACAAAAG-AA
1 GAGAAAAAT-AGAAAA-ACAAAAGCAA
*
30028 GAGAGAAAATAGCAAAACAAAAGCAA
1 GAGA-AAAATAGAAAAACAAAAGCAA
*
30054 AAGAAAA
1 GAGAAAA
30061 CAAAAAGCAT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
25 10 0.34
26 14 0.48
27 5 0.17
ACGTcount: A:0.69, C:0.10, G:0.17, T:0.03
Consensus pattern (25 bp):
GAGAAAAATAGAAAAACAAAAGCAA
Found at i:40367 original size:431 final size:430
Alignment explanation
Indices: 39540--41281 Score: 1885
Period size: 431 Copynumber: 4.1 Consensus size: 430
39530 AGCTCGCATC
* * * * * * * *
39540 AATACAATAAGGAA-CCACAGTTATAGAAGAACTCGTAAAATTTTGACAAGTTCAAAATTTTGTC
1 AATACTATAAGGAATCGA-AGTTATAAAAGAACTCATAAAAGTTTGACAAATTCAAAAGTTCGTC
* * *
39604 CAAGAACAAAAAAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCGAAA-ACCAAAACTTGT
65 CAAGAAC-CAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTC-AAAGACCAAAACTTGT
** * * * * * *
39668 TTCGAAAATGTAAAACTATTTAGACCAAATGAAGAGATTTCCCGGGAT--TGGAATGGTC--TAA
128 TTAAAAAATGAAAAACTATTTAGACCAAATGATGA-AATTACC--GATCATGGAATGTTCAAAAA
* * * **
39729 ATTACTCGAAGGAGTGGATCGTTTTGAGCACTTTAAGGAACCGAAGTTATAAAAGAACTTGTAAA
190 ATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTTGTAAA
* * *
39794 AGTTTCACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATGAGTTT
255 AGGTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG-TT
* *** ** * * * **
39859 TTAATTTAAAGTTCAAAACTTGTTTACGAAATGACAAACTATATAGATCAAATGATGCGATTTCC
319 TTAATTCAAAAAGCAAAACTTGTTTAAAAAATGAAAAACTATTTAGATCAAATGATGCGAATTAT
* * **
39924 CGAGCATGGAATGTTC-GAAAAGTAGCTCGAAGGAATGGATCATCTCA
384 CGAGCATGGAATGTTCAGAAAA-TTGCTCGAAGGAATGGATCGTCTTG
* * * * *
39971 AATACTATAAGGAATCGAAGTTATAAAATAACTCGTAAAAGTTTGATAAATTTAGAAGTTCGTCC
1 AATACTATAAGGAATCGAAGTTATAAAAGAACTCATAAAAGTTTGACAAATTCAAAAGTTCGTCC
* * * **
40036 AAGAGCCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTTAAAGACCCAATGTTGTTTA
66 AAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTA
40101 AAAAATGAAAAACTATTTAGACCAAATGATGCAAATTACCGATCATGGAATGTTCAAAAAATTGC
131 AAAAATGAAAAACTATTTAGACCAAATGATG-AAATTACCGATCATGGAATGTTCAAAAAATTGC
* * * *
40166 TAGAAGGAATGGATCGTCCTGAATACTTTAAGGAATCGAAGTTATAAAAAGAACTCGT-AAAGGT
195 TCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTAT-AAAAGAACTTGTAAAAGGT
* *
40230 TGATAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTTTCACGTAAATAAGTTTTAAT
259 TGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTAAT
* *
40295 TCAAAAAGCAAAAGTTGTTTAAAAAATGAAAAACTATTTAGATCAAATGATGCGAATTATCGATC
324 TCAAAAAGCAAAACTTGTTTAAAAAATGAAAAACTATTTAGATCAAATGATGCGAATTATCGAGC
* *
40360 ATGGAATGTTC-GAAAAATTGCTCGAATGTATGGATCGTCTTG
389 ATGGAATGTTCAG-AAAATTGCTCGAAGGAATGGATCGTCTTG
* *
40402 AATACT-TAATGGAATCGAAGTTATAAGAGAACTCATAAAAGTTTGACAAGTTCAAAAGTTCGTC
1 AATACTATAA-GGAATCGAAGTTATAAAAGAACTCATAAAAGTTTGACAAATTCAAAAGTTCGTC
* * *
40466 CAAGAACCAAGTGAGAAACAATTCTCACGTAAATAAGTTTTT-ATGTCAAAGACAAAAACTTGTT
65 CAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAAT-TCAAAGACCAAAACTTGTT
* * * * * * *
40530 TACAAAATGACAAACGATTTAGACCAAATGATGTAATTTCTTGAGCATGGAATGTTCAAAAAATT
129 TAAAAAATGAAAAACTATTTAGACCAAATGATGAAATTAC-CGATCATGGAATGTTCAAAAAATT
* * * * * **
40595 TCTCGAA-TAA---A-----TTAAATACATTAAGGAACCAAAGTTATAAAAGAACTTGTAAAATT
193 GCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTTGTAAAAGG
* * * * * * *
40651 TTGACCAGTTCGAAAGTTTGTCCAAGAACAAAAAGAGAAACAATTCTCACGTACATAAGTTTACA
258 TTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT-TA
* * * * * *
40716 ATTC-AAAGGCCAAAACTTGTTTACAAAATGATAAACTATTTAGACCGAATGATGCG-ATT-TCC
322 ATTCAAAAAG-CAAAACTTGTTTAAAAAATGAAAAACTATTTAGATCAAATGATGCGAATTATCG
* * * * * * *
40778 CGCGATTTGAAAGGTCAAAAAATTTGCTCGAAGAAATGGATCGTTTTG
386 AGC-A-TGGAATGTTCAGAAAA-TTGCTCGAAGGAATGGATCGTCTTG
* * * *
40826 AATACTGTAAGGAACCAAAGTTATAAAAGAACTCATAAAAGTTTGACAAATTCGAAAGTTCGTCC
1 AATACTATAAGGAATCGAAGTTATAAAAGAACTCATAAAAGTTTGACAAATTCAAAAGTTCGTCC
*
40891 AAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
66 AAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTT-
* * * * * *
40956 AAAAAATGAAAAACTATTTAGATCAAATGATGCAAATTACCGGTCATAGAATGTACATAAAATAG
130 AAAAAATGAAAAACTATTTAGACCAAATGATG-AAATTACCGATCATGGAATGTTCAAAAAATTG
* * * *
41021 ATCGAAGAAATGGATTGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAAGAACTTGT-AAAGG
194 CTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTAT-AAAAGAACTTGTAAAAGG
* * * *
41085 TTGATAAGTTCGGAAGTTCGTCCAAAAACCAAGAGAGAAACAATTCTCACATAAATAAATTTTTA
258 TTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT-AAGTTTTA
* * * * *
41150 ATTCAAAAACCAAAAGTTGTCTAAAAAAATGAAAAACTATTTAGATCAAATTATGTGAATTATCG
322 ATTCAAAAAGCAAAACTTGT-TTAAAAAATGAAAAACTATTTAGATCAAATGATGCGAATTATCG
* * * * * *
41215 ATCATGGAATGTTCGGAAAATTGCTTGAAGGAATGTATTGTCCTG
386 AGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTG
* * * *
41260 AATATTTTATGGAACCGAAGTT
1 AATACTATAAGGAATCGAAGTT
41282 TTAGTCTTTG
Statistics
Matches: 1084, Mismatches: 189, Indels: 73
0.81 0.14 0.05
Matches are distributed among these distances:
421 14 0.01
422 87 0.08
423 57 0.05
424 134 0.12
425 55 0.05
426 7 0.01
427 1 0.00
428 3 0.00
429 4 0.00
430 101 0.09
431 310 0.29
432 109 0.10
433 11 0.01
434 124 0.11
435 60 0.06
436 4 0.00
437 3 0.00
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.28
Consensus pattern (430 bp):
AATACTATAAGGAATCGAAGTTATAAAAGAACTCATAAAAGTTTGACAAATTCAAAAGTTCGTCC
AAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTA
AAAAATGAAAAACTATTTAGACCAAATGATGAAATTACCGATCATGGAATGTTCAAAAAATTGCT
CGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTTGTAAAAGGTTG
ACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTAATTC
AAAAAGCAAAACTTGTTTAAAAAATGAAAAACTATTTAGATCAAATGATGCGAATTATCGAGCAT
GGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTG
Found at i:40910 original size:217 final size:216
Alignment explanation
Indices: 40616--41200 Score: 728
Period size: 217 Copynumber: 2.7 Consensus size: 216
40606 TTAAATACAT
* * * *
40616 TAAGGAACCAAAGTTATAAAAGAACTTGTAAAATTTTGACCAGTTCGAAAGTTTGTCCAAGAACA
1 TAAGGAACCAAAGTTATAAAAGAACTTGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACC
* * * ** * * *
40681 AAAAGAGAAACAATTCTCACGTACATAAGTTTACAATTCAAAGGCCAAAACTTGTTTACAAAATG
66 AAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAAAAAATG
* * * * * * * *
40746 ATAAACTATTTAGACCGAATGATGC-GATTTCCCG-CGATTTGAAAGGT-CAAAAAATTTGCTCG
131 AAAAACTATTTAGACCAAATGATGCAAATTACCGGTC-A-TAG-AAGGTACAAAAAA-TAGATCG
*
40808 AAGAAATGGATCGTTTTGAATACTG
192 AAGAAATGGATCGTCTTGAATACTG
** *
40833 TAAGGAACCAAAGTTATAAAAGAACTCATAAAAGTTTGACAAATTCGAAAGTTCGTCCAAGAACC
1 TAAGGAACCAAAGTTATAAAAGAACTTGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACC
40898 AAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAAAAAAAT
66 AAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT-AAAAAAT
* * *
40963 GAAAAACTATTTAGATCAAATGATGCAAATTACCGGTCATAGAATGTACATAAAATAGATCGAAG
130 GAAAAACTATTTAGACCAAATGATGCAAATTACCGGTCATAGAAGGTACAAAAAATAGATCGAAG
* *
41028 AAATGGATTGTCTTGAATACTT
195 AAATGGATCGTCTTGAATACTG
* * * * * *
41050 TAAGGAATCGAAGTTATAAAAAGAACTTGT-AAAGGTTGATAAGTTCGGAAGTTCGTCCAAAAAC
1 TAAGGAACCAAAGTTAT-AAAAGAACTTGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAAC
* * *
41114 CAAGAGAGAAACAATTCTCACATAAATAAATTTTTAATTCAAAAACCAAAAGTTGTCTAAAAAAA
65 CAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGT-TTAAAAAA
*
41179 TGAAAAACTATTTAGATCAAAT
129 TGAAAAACTATTTAGACCAAAT
41201 TATGTGAATT
Statistics
Matches: 321, Mismatches: 41, Indels: 12
0.86 0.11 0.03
Matches are distributed among these distances:
217 265 0.83
218 48 0.15
219 7 0.02
220 1 0.00
ACGTcount: A:0.45, C:0.14, G:0.15, T:0.26
Consensus pattern (216 bp):
TAAGGAACCAAAGTTATAAAAGAACTTGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACC
AAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAAAAAATG
AAAAACTATTTAGACCAAATGATGCAAATTACCGGTCATAGAAGGTACAAAAAATAGATCGAAGA
AATGGATCGTCTTGAATACTG
Found at i:41281 original size:217 final size:216
Alignment explanation
Indices: 39547--41281 Score: 1783
Period size: 216 Copynumber: 8.1 Consensus size: 216
39537 ATCAATACAA
* * ** * *
39547 TAAGGAACC-ACAGTTATAGAAGAACTCGTAAAATTTTGACAAGTTCAAAATTTTGTCCAAGAAC
1 TAAGGAACCGA-AGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAAC
* * * **
39611 AAAAAAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCGAAA-ACCAAAACTTGTTTCGAAA
65 -CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC-AAAGACCAAAAGTTGTTTAAAAA
* * * * * ** * * *
39675 ATGTAAAACTATTTAGACCAAATGAAGAGATTTCCCGGGAT--TGGAATGGTC--TAAATTACTC
128 ATGAAAAACTATTTAGATCAAATGATGCGAATTATC--GATCATGGAATGTTCAAAAAATTGCTC
* ** **
39736 GAAGGAGTGGATCGTTTTGAGCACTT
191 GAAGGAATGGATCGTCCTGAATACTT
* *
39762 TAAGGAACCGAAGTTATAAAAGAACTTGTAAAAGTTTCACAAGTTCGGAAGTTCGTCCAAGAACC
1 TAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACC
* * ** * **
39827 AAGAGAGAAACAATTCTCACGTAAATGAGTTTTTAATTTAAAGTTCAAAACTTGTTTACGAAATG
66 AAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAAAAAATG
* * * ** * * * *
39892 ACAAACTATATAGATCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAGTAGCTCGAAGG
131 AAAAACTATTTAGATCAAATGATGCGAATTATCGATCATGGAATGTTCAAAAAATTGCTCGAAGG
* * *
39957 AATGGATCAT-CTCAAATACTA
196 AATGGATCGTCCT-GAATACTT
* * * * ** *
39978 TAAGGAATCGAAGTTATAAAATAACTCGTAAAAGTTTGATAAATTTAGAAGTTCGTCCAAGAGCC
1 TAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACC
* * * *
40043 AAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTTAAAGACCCAATGTTGTTTAAAAAATG
66 AAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAAAAAATG
* * * *
40108 AAAAACTATTTAGACCAAATGATGCAAATTACCGATCATGGAATGTTCAAAAAATTGCTAGAAGG
131 AAAAACTATTTAGATCAAATGATGCGAATTATCGATCATGGAATGTTCAAAAAATTGCTCGAAGG
40173 AATGGATCGTCCTGAATACTT
196 AATGGATCGTCCTGAATACTT
* * *
40194 TAAGGAATCGAAGTTATAAAAAGAACTCGT-AAAGGTTGATAAGTTCGGAAGTTCGTCCAAGAAC
1 TAAGGAACCGAAGTTAT-AAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAAC
* * *
40258 CAAGAGAGAAACAATTTTCACGTAAATAAG-TTTTAATTCAAAAAGCAAAAGTTGTTTAAAAAAT
65 CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAAAAAAT
* *
40322 GAAAAACTATTTAGATCAAATGATGCGAATTATCGATCATGGAATGTTCGAAAAATTGCTCGAAT
130 GAAAAACTATTTAGATCAAATGATGCGAATTATCGATCATGGAATGTTCAAAAAATTGCTCGAAG
* *
40387 GTATGGATCGTCTTGAATAC-T
195 GAATGGATCGTCCTGAATACTT
* * * **
40408 TAATGGAATCGAAGTTATAAGAGAACTCATAAAAGTTTGACAAGTTCAAAAGTTCGTCCAAGAAC
1 TAA-GGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAAC
* * * *
40473 CAAGTGAGAAACAATTCTCACGTAAATAAGTTTTT-ATGTCAAAGACAAAAACTTGTTTACAAAA
65 CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT-TCAAAGACCAAAAGTTGTTTAAAAAA
* * * * * *
40537 TGACAAACGATTTAGACCAAATGATG-TAATT-TCTTGAGCATGGAATGTTCAAAAAATTTCTCG
129 TGAAAAACTATTTAGATCAAATGATGCGAATTATC--GATCATGGAATGTTCAAAAAATTGCTCG
* * *
40600 AA-TAA---A---T--TAAATACAT
192 AAGGAATGGATCGTCCTGAATACTT
* * * * * * *
40616 TAAGGAACCAAAGTTATAAAAGAACTTGTAAAATTTTGACCAGTTCGAAAGTTTGTCCAAGAACA
1 TAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACC
* * ** * * *
40681 AAAAGAGAAACAATTCTCACGTACATAAGTTTACAATTCAAAGGCCAAAACTTGTTTACAAAATG
66 AAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAAAAAATG
* * * *** * * *
40746 ATAAACTATTTAGACCGAATGATGCG-ATT-TCCCGCGATTTGAAAGGTCAAAAAATTTGCTCGA
131 AAAAACTATTTAGATCAAATGATGCGAATTATCGATC-A-TGGAATGTTCAAAAAA-TTGCTCGA
* ** *
40809 AGAAATGGATCGTTTTGAATACTG
193 AGGAATGGATCGTCCTGAATACTT
* * * *
40833 TAAGGAACCAAAGTTATAAAAGAACTCATAAAAGTTTGACAAATTCGAAAGTTCGTCCAAGAACC
1 TAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACC
*
40898 AAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAAAAAAAT
66 AAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT-AAAAAAT
* * * * * * * *
40963 GAAAAACTATTTAGATCAAATGATGCAAATTACCGGTCATAGAATGTACATAAAATAGATCGAAG
130 GAAAAACTATTTAGATCAAATGATGCGAATTATCGATCATGGAATGTTCAAAAAATTGCTCGAAG
* * *
41028 AAATGGATTGTCTTGAATACTT
195 GAATGGATCGTCCTGAATACTT
* * * * *
41050 TAAGGAATCGAAGTTATAAAAAGAACTTGT-AAAGGTTGATAAGTTCGGAAGTTCGTCCAAAAAC
1 TAAGGAACCGAAGTTAT-AAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAAC
* * * *
41114 CAAGAGAGAAACAATTCTCACATAAATAAATTTTTAATTCAAAAACCAAAAGTTGTCTAAAAAAA
65 CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGT-TTAAAAAA
* * ** *
41179 TGAAAAACTATTTAGATCAAATTATGTGAATTATCGATCATGGAATGTTCGGAAAATTGCTTGAA
129 TGAAAAACTATTTAGATCAAATGATGCGAATTATCGATCATGGAATGTTCAAAAAATTGCTCGAA
* * *
41244 GGAATGTATTGTCCTGAATATTT
194 GGAATGGATCGTCCTGAATACTT
*
41267 TATGGAACCGAAGTT
1 TAAGGAACCGAAGTT
41282 TTAGTCTTTG
Statistics
Matches: 1279, Mismatches: 206, Indels: 68
0.82 0.13 0.04
Matches are distributed among these distances:
205 2 0.00
206 1 0.00
207 152 0.12
208 14 0.01
209 3 0.00
212 4 0.00
213 3 0.00
214 105 0.08
215 241 0.19
216 354 0.28
217 343 0.27
218 51 0.04
219 4 0.00
220 2 0.00
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.28
Consensus pattern (216 bp):
TAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACC
AAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAAAAAATG
AAAAACTATTTAGATCAAATGATGCGAATTATCGATCATGGAATGTTCAAAAAATTGCTCGAAGG
AATGGATCGTCCTGAATACTT
Found at i:42869 original size:215 final size:214
Alignment explanation
Indices: 42113--43368 Score: 1387
Period size: 214 Copynumber: 5.8 Consensus size: 214
42103 CGGAAGTTCC
* * * * *
42113 TCAAAGACCAAAACTTGATTACAAAATGACAAACTATTTAGACCAAATGATATGATTTCCCGAGC
1 TCAAAGACAAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATACGATTTCCCG-GG
* * * * * * *
42178 A-TGGAATGTTTTGAAAATTGCTTGAAGGAATGGACCGTCTTAAATACTTTAAGGAACCGCAGTT
65 ATTGGAATG-GTCG-AAATTGCTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACCGAAGTT
* * ** * *
42242 ATAAAAGAACTTGTAAAAAAGTTTGACAAGTTAGGAAGTTCGTCTTAGAACCAAAAGAGAAAAAA
128 ATAAAAGAACTCGT--AAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGGACCAAAAGAGAAACAA
42307 TTCTCACGTAAATAAGTTTTTAAT
191 TTCTCACGTAAATAAGTTTTTAAT
* * * * * * * * *
42331 CCAGATACCAAAACTTGTTTACAAAATGACAAACTATTTAGAACAAATGATGCGATTTCCCAAGC
1 TCAAAGACAAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATACGATTTCCC-GGG
* * * * *
42396 A-TGCAATGTTCGAAAAATTTCTCGTAAGGAATGGATCGTCTTGAATACTTTAAGAAACCGAAGT
65 ATTGGAATGGTCG--AAATTGCTCG-AAGGAATGGATCGTCTTGAACACTTTAAGGAACCGAAGT
* * * * * * * * *
42460 TATAAAAGAAATTGTAAAAGTGTGAAAAGTTCGGATGTTCGTCC-GGGATCTAAGAGAAAAACAA
127 TATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGGA-CCAAAAGAGAAACAA
* * *
42524 TTCTTACGTAAACAAGTTTGTAAT
191 TTCTCACGTAAATAAGTTTTTAAT
* * * * * * *
42548 TCGAAGTCCAAAAA-TTGTTTACAAAATGACAATCTATTTAGACCAAATGATGCGATTTCTCGAG
1 TCAAAG-ACAAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATACGATTTCCCGGG
* * * * * *
42612 ATTGAAATGGTCGAAATTTCTCAAAGGAATGGATCATCTTGAACACTTTAAGGAACCAAAGTTTT
65 ATTGGAATGGTCGAAATTGCTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACCGAAGTTAT
* *
42677 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGGACCAAAAGGGAAACAATTCT
130 AAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGGACCAAAAGAGAAACAATTCT
*
42742 CATGTAAATAAGTTTTTAAT
195 CACGTAAATAAGTTTTTAAT
* * *
42762 TCAAAGACAAAAAAGTTGTTTACAAAATGAAAAACTATATAGACCAAATGATACAATTTCCCGGG
1 TCAAAGAC-AAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATACGATTTCCCGGG
* * * *
42827 ATTGGAACGGTCGGAATTGCTCAAAGGAATGGATCGTCTTGAACACTTTAAGGAACCAAAGTTAT
65 ATTGGAATGGTCGAAATTGCTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACCGAAGTTAT
* * * *
42892 AAAAGAACTCGTAAAAGTTCGACAAGTTCGAAAGTTCGTCCAAGGACCAAGAGGGAAACAATTCT
130 AAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGGACCAAAAGAGAAACAATTCT
42957 CACGTAAATAAGTTTTTAAT
195 CACGTAAATAAGTTTTTAAT
* * * * * * *
42977 TCAAACAAAAAAAGTTGTTTACAAAATGGAAAACTATATAGACCAAATGATGCAATTTCCCGGGA
1 TCAAAGACAAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATACGATTTCCCGGGA
* * * *
43042 TTGGAATGATTGAAATTGCTCGAAGGAATGGATCGTCTTGAACACTGTAAGGAACCGAAGTTTTA
66 TTGGAATGGTCGAAATTGCTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACCGAAGTTATA
* * ** * * *
43107 AAAGAACTCGTAAAAGTTTGACAAGTTCGGTAGTTTGTCTTAGAACAAAAAGAGAAACAAATCTC
131 AAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGGACCAAAAGAGAAACAATTCTC
* *
43172 ACGTATATTAGTTTTTAAT
196 ACGTAAATAAGTTTTTAAT
** * * *
43191 TTGAAGACCAAAACTTGTTT-CGAAAGTGAAAAACTATTTAGACCAAATGATGA-GATTTCCTGG
1 TCAAAGACAAAAACTTGTTTAC-AAAATGAAAAACTATTTAGACCAAATGAT-ACGATTTCCCGG
* * * *
43254 G-TTGGAAAGGTCGAAATTGCTCGAAGGAATTGATTGTCTTGAACACTTTAAGGAACCGAAGATA
64 GATTGGAATGGTCGAAATTGCTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACCGAAGTTA
* * * *
43318 TAAAGGAGCTCGTAAAAG-TTGACAAGTTTGGAAGTTCGT-CAAAGACCAAAA
129 TAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGGACCAAAA
43369 CTTGTTTACA
Statistics
Matches: 888, Mismatches: 139, Indels: 29
0.84 0.13 0.03
Matches are distributed among these distances:
211 7 0.01
212 18 0.02
213 73 0.08
214 345 0.39
215 202 0.23
216 3 0.00
217 114 0.13
218 77 0.09
219 49 0.06
ACGTcount: A:0.40, C:0.14, G:0.19, T:0.27
Consensus pattern (214 bp):
TCAAAGACAAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATACGATTTCCCGGGA
TTGGAATGGTCGAAATTGCTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACCGAAGTTATA
AAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGGACCAAAAGAGAAACAATTCTC
ACGTAAATAAGTTTTTAAT
Found at i:42953 original size:429 final size:425
Alignment explanation
Indices: 42119--43366 Score: 1477
Period size: 429 Copynumber: 2.9 Consensus size: 425
42109 TTCCTCAAAG
* * **
42119 ACCAAAACTTGATTACAAAATGACAAACTATTTAGACCAAATGATATGATTTCCCGAGCA-TGGA
1 ACCAAAAATTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAG-ATTGGA
* * * * * * *
42183 ATGTTTTGAAAATTGCTTGAAGGAATGGACCGTCTTAAATACTTTAAGGAACCGCAGTTATAAAA
65 ATG-ATTG-AAATTGCTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACCGAAGTTTTAAAA
* * *
42248 GAACTTGTAAAAAAGTTTGACAAGTTAGGAAGTTCGTCTTAGAACCAAAAGAGAAAAAATTCTCA
128 GAACTCGT--AAAAGTTTGACAAGTTCGGAAGTTCGTCTTAGAACCAAAAGAGAAACAATTCTCA
* * * * *
42313 CGTAAATAAGTTTTTAATCCAGATACCAAAACTTGTTTACAAAATGACAAACTATTTAGAACAAA
191 CGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAA
* * * * * * * * *
42378 TGATGCGATTTCCCAAGCA-TGCAATGTTCGAAAAATTTCTCGTAAGGAATGGATCGTCTTGAAT
256 TGATACGATTTCCC-GGGATTGGAAAGGTCG--AAATTGCTC-AAAGGAATGGATCGTCTTGAAC
* * * * * *
42442 ACTTTAAGAAACCGAAGTTATAAAAGAAATTGTAAAAGTGTGAAAAGTTCGGATGTTCGTCC-GG
317 ACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGT-TGACAAGTTCGGAAGTTCGTCCAAG
* *
42506 GATCTAAGAGAAAAACAATTCTTACGTAAACAAGTTTGTAATTCGAA
381 GA-CCAAGAGAAAAACAATTCTCACGTAAACAAGTTTGTAATTC-AA
* * * *
42553 GTCCAAAAATTGTTTACAAAATGACAATCTATTTAGACCAAATGATGCGATTTCTCGAGATTGAA
1 -ACCAAAAATTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGATTGGA
* * * * * *
42618 ATGGTCGAAATTTCTCAAAGGAATGGATCATCTTGAACACTTTAAGGAACCAAAGTTTTAAAAGA
65 ATGATTGAAATTGCTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACCGAAGTTTTAAAAGA
* ** * * *
42683 ACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGGACCAAAAGGGAAACAATTCTCATGTA
130 ACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCTTAGAACCAAAAGAGAAACAATTCTCACGTA
* * *
42748 AATAAGTTTTTAATTCAAAGACAAAAAAGTTGTTTACAAAATGAAAAACTATATAGACCAAATGA
195 AATAAGTTTTTAATTCAAAGAC-CAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGA
* * *
42813 TACAATTTCCCGGGATTGGAACGGTCGGAATTGCTCAAAGGAATGGATCGTCTTGAACACTTTAA
259 TACGATTTCCCGGGATTGGAAAGGTCGAAATTGCTCAAAGGAATGGATCGTCTTGAACACTTTAA
* *
42878 GGAACCAAAGTTATAAAAGAACTCGTAAAAGTTCGACAAGTTCGAAAGTTCGTCCAAGGACCAAG
324 GGAACCGAAGTTATAAAAGAACTCGTAAAAGTT-GACAAGTTCGGAAGTTCGTCCAAGGACCAAG
** * *
42943 AGGGAAACAATTCTCACGTAAATAAGTTTTTAATTCAA
388 AGAAAAACAATTCTCACGTAAACAAGTTTGTAATTCAA
* * * *
42981 ACAAAAAAAGTTGTTTACAAAATGGA-AAACTATATAGACCAAATGATGCAATTTCCCGGGATTG
1 AC-CAAAAA-TTGTTTACAAAAT-GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGATTG
*
43045 GAATGATTGAAATTGCTCGAAGGAATGGATCGTCTTGAACACTGTAAGGAACCGAAGTTTTAAAA
63 GAATGATTGAAATTGCTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACCGAAGTTTTAAAA
* * * *
43110 GAACTCGTAAAAGTTTGACAAGTTCGGTAGTTTGTCTTAGAACAAAAAGAGAAACAAATCTCACG
128 GAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCTTAGAACCAAAAGAGAAACAATTCTCACG
* * ** *
43175 TATATTAGTTTTTAATTTGAAGACCAAAACTTGTTT-CGAAAGTGAAAAACTATTTAGACCAAAT
193 TAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTAC-AAAATGAAAAACTATTTAGACCAAAT
* * * *
43239 GATGA-GATTTCCTGGG-TTGGAAAGGTCGAAATTGCTCGAAGGAATTGATTGTCTTGAACACTT
257 GAT-ACGATTTCCCGGGATTGGAAAGGTCGAAATTGCTCAAAGGAATGGATCGTCTTGAACACTT
* * * * *
43302 TAAGGAACCGAAGATATAAAGGAGCTCGTAAAAGTTGACAAGTTTGGAAGTTCGT-CAAAGACCA
321 TAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTGACAAGTTCGGAAGTTCGTCCAAGGACCA
43366 A
386 A
43367 AACTTGTTTA
Statistics
Matches: 694, Mismatches: 109, Indels: 30
0.83 0.13 0.04
Matches are distributed among these distances:
425 9 0.01
426 17 0.02
427 76 0.11
428 54 0.08
429 287 0.41
430 12 0.02
431 72 0.10
432 54 0.08
433 53 0.08
434 3 0.00
435 57 0.08
ACGTcount: A:0.40, C:0.14, G:0.19, T:0.27
Consensus pattern (425 bp):
ACCAAAAATTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGATTGGAA
TGATTGAAATTGCTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACCGAAGTTTTAAAAGAA
CTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCTTAGAACCAAAAGAGAAACAATTCTCACGTAA
ATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATA
CGATTTCCCGGGATTGGAAAGGTCGAAATTGCTCAAAGGAATGGATCGTCTTGAACACTTTAAGG
AACCGAAGTTATAAAAGAACTCGTAAAAGTTGACAAGTTCGGAAGTTCGTCCAAGGACCAAGAGA
AAAACAATTCTCACGTAAACAAGTTTGTAATTCAA
Found at i:43769 original size:217 final size:216
Alignment explanation
Indices: 43356--44312 Score: 1025
Period size: 217 Copynumber: 4.4 Consensus size: 216
43346 TGGAAGTTCG
* * * *
43356 TCAAAGACCAAAACTTGTTTACAAAATGAAAAACTATTTATACCAAATGATATGATTTCTCGAGT
1 TCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATACGATTTCTCGAGC
* * * * * * *
43421 ATGGAATGTTCAAAAAATTGCTCAAAGGAATGGACCGCCTTAAATACTTTAAGGAACCGCAGTTA
66 ATGGAATGTTCAAAAAATTTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGAAACCGAAGTTA
* * * * **
43486 TAAAAGAACTTGTAAAAATTTGACAAGTTAGGAAGTACGTCTTAGAACCAA-AAGAGAAAA-AAT
131 TAAAAGAAATTGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAA-A-AAAACAAT
*
43549 TCTCATGTAAATAAGTTTTTAAT
194 TCTCACGTAAATAAGTTTTTAAT
* * * * * *
43572 TCAAATACCAAAACTTGTTTACGAAATGACAAACTATTTAGACCTAATGATGCGATTTCCCAAGC
1 TCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATACGATTTCTCGAGC
* * *
43637 ATGGAATGTTCGAAAAATTTCTCGTAAGGAATGGATCGTCTTGAATAATCTAAGAAACCGAAGTT
66 ATGGAATGTTCAAAAAATTTCTCG-AAGGAATGGATCGTCTTGAATACTTTAAGAAACCGAAGTT
* * * * *
43702 ATAAAATAAATTGTAAAAGTGTGACAAGTTCGGATGTTTGTCCAAGATCCAAGAAAAAAACAATT
130 ATAAAAGAAATTGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAAAAAAACAATT
*
43767 CTCACGTAAACAAGTTTTTAAT
195 CTCACGTAAATAAGTTTTTAAT
* * * * *
43789 TCGAAGACCAAAAATTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCTCAAG-
1 TCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATACGATTTCTCGAGC
* * * * *
43853 ATTGGAATGGTT---GAAATTGCTCGAAGGAATGGATCATCTTCAACACTTTAA-AGAACCGAAG
66 A-TGGAAT-GTTCAAAAAATTTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGA-AACCGAAG
* * * * * * * * ***
43914 TTATAAAAGGACTCGTAAATGTTTAACAAGTTCGAAAGTTTGTCCAAGGACCAAGAGGGAAACAA
128 TTATAAAAGAAATTGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAAAAAAACAA
* * *
43979 TTCTGAAGTAAATAAGTTTTGAAT
193 TTCTCACGTAAATAAGTTTTTAAT
* * * * ** *
44003 TTAAAGACAAAAAGTTGTTTAC-AAATGACAAACTATATAGACCAAATGATTTGATTTCCCGAGC
1 TCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATACGATTTCTCGAGC
* * * * * *
44067 ATGGAATGCTCAAAAAATTTCTCGAAGGAATGGATTGTGTTGAATACTTTACGGAACCAAAGTTA
66 ATGGAATGTTCAAAAAATTTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGAAACCGAAGTTA
* ** * ** *
44132 TACAA-CTATTCATAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGCGAGAAACAATT
131 TAAAAGAAATT-GTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAAAAAAACAATT
*
44196 CTCACATAAATAAGTTTTTAAT
195 CTCACGTAAATAAGTTTTTAAT
* * *
44218 TAAAAGACCAAAAGTTGTTTACGAAATGACAAACTATTTAGACCAAATGATACGATTTCTCGAGC
1 TCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATACGATTTCTCGAGC
* *
44283 ATGGAATGCTC-AAAAATTTGCTTGAAGGAA
66 ATGGAATGTTCAAAAAATTT-CTCGAAGGAA
44313 CTGAAGATAT
Statistics
Matches: 617, Mismatches: 110, Indels: 28
0.82 0.15 0.04
Matches are distributed among these distances:
212 2 0.00
213 42 0.07
214 122 0.20
215 145 0.24
216 139 0.23
217 162 0.26
218 5 0.01
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.28
Consensus pattern (216 bp):
TCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATACGATTTCTCGAGC
ATGGAATGTTCAAAAAATTTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGAAACCGAAGTTA
TAAAAGAAATTGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAAAAAAACAATTC
TCACGTAAATAAGTTTTTAAT
Found at i:44198 original size:429 final size:430
Alignment explanation
Indices: 43358--44300 Score: 1149
Period size: 429 Copynumber: 2.2 Consensus size: 430
43348 GAAGTTCGTC
* * * * *
43358 AAAGACCAAAACTTGTTTACAAAATGAAAAACTATTTATACCAAATGATATGATTTCTCGAGTAT
1 AAAGACCAAAAATTGTTTACAAAATGACAAACTATTTAGACCAAATGATACGATTTCTCAAGTAT
* * * *
43423 GGAATGTTCAAAAAATTGCTCAAAGGAATGGACCGCCTTAAATACTTTAAGGAACCGCAGTTATA
66 GGAATGTT--AAAAATTGCTCAAAGGAATGGACCACCTTAAACACTTTAAAGAACCGAAGTTATA
* * * **
43488 AAAGAACTTGTAAAAATTTGACAAGTTAGGAAGTACGTCTTAGAACCAAAAGAGAAAAAATTCTC
129 AAAGAACTCGTAAAAATTTAACAAGTTAGAAAGTACGTCCAAGAACCAAAAGAGAAAAAATTCTC
* * * * * *
43553 ATGTAAATAAGTTTTTAATTCAAATACCAAAACTTGTTTACGAAATGACAAACTATTTAGACCTA
194 AAGTAAATAAGTTTTGAATTCAAAGACAAAAACTTGTTTACGAAATGACAAACTATATAGACCAA
* *
43618 ATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTTCTCGTAAGGAATGGATCGTCTTGAAT
259 ATGATGCGATTTCCCAAGCATGGAATGCTCAAAAAATTTCTCGTAAGGAATGGATCGTCTTGAAT
* * * *
43683 AATCTAAGAAACCGAAGTTATAAAATAAATTGTAAAAGTGTGACAAGTTCGGATGTTTGTCCAAG
324 AATCTAAGAAACCAAAGTTATAAAAT-AATTATAAAAGTGTGACAAGTTCGGAAGTTCGTCCAAG
* * *
43748 ATCCAAGAAAAAAACAATTCTCACGTAAACAAGTTTTTAATTC
388 AACCAAGAAAAAAACAATTCTCACATAAACAAGTTTTTAATTA
* * *
43791 GAAGACCAAAAATTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCTCAAG-AT
1 AAAGACCAAAAATTGTTTACAAAATGACAAACTATTTAGACCAAATGATACGATTTCTCAAGTA-
* * * * *
43855 TGGAATGGTT-GAAATTGCTCGAAGGAATGGATCATCTTCAACACTTTAAAGAACCGAAGTTATA
65 TGGAAT-GTTAAAAATTGCTCAAAGGAATGGACCACCTTAAACACTTTAAAGAACCGAAGTTATA
* ** * ** * * * * *
43919 AAAGGACTCGTAAATGTTTAACAAGTTCGAAAGTTTGTCCAAGGACCAAGAGGGAAACAATTCTG
129 AAAGAACTCGTAAAAATTTAACAAGTTAGAAAGTACGTCCAAGAACCAAAAGAGAAAAAATTCTC
* *
43984 AAGTAAATAAGTTTTGAATTTAAAGACAAAAAGTTGTTTAC-AAATGACAAACTATATAGACCAA
194 AAGTAAATAAGTTTTGAATTCAAAGACAAAAACTTGTTTACGAAATGACAAACTATATAGACCAA
** * * *
44048 ATGATTTGATTTCCCGAGCATGGAATGCTCAAAAAATTTCTCG-AAGGAATGGATTGTGTTGAAT
259 ATGATGCGATTTCCCAAGCATGGAATGCTCAAAAAATTTCTCGTAAGGAATGGATCGTCTTGAAT
* * * * * *
44112 ACTTTACGGAACCAAAGTTATACAACT-ATTCATAAAAGTTTGACAAGTTCGGAAGTTCGTCCAA
324 AATCTAAGAAACCAAAGTTATA-AAATAATT-ATAAAAGTGTGACAAGTTCGGAAGTTCGTCCAA
** * *
44176 GAACCAAGCGAGAAACAATTCTCACATAAATAAGTTTTTAATTA
387 GAACCAAGAAAAAAACAATTCTCACATAAACAAGTTTTTAATTA
* * * *
44220 AAAGACCAAAAGTTGTTTACGAAATGACAAACTATTTAGACCAAATGATACGATTTCTCGAGCAT
1 AAAGACCAAAAATTGTTTACAAAATGACAAACTATTTAGACCAAATGATACGATTTCTCAAGTAT
*
44285 GGAATGCTCAAAAATT
66 GGAATG-TTAAAAATT
44301 TGCTTGAAGG
Statistics
Matches: 430, Mismatches: 73, Indels: 17
0.83 0.14 0.03
Matches are distributed among these distances:
428 4 0.01
429 165 0.38
430 68 0.16
431 129 0.30
432 1 0.00
433 60 0.14
434 3 0.01
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.28
Consensus pattern (430 bp):
AAAGACCAAAAATTGTTTACAAAATGACAAACTATTTAGACCAAATGATACGATTTCTCAAGTAT
GGAATGTTAAAAATTGCTCAAAGGAATGGACCACCTTAAACACTTTAAAGAACCGAAGTTATAAA
AGAACTCGTAAAAATTTAACAAGTTAGAAAGTACGTCCAAGAACCAAAAGAGAAAAAATTCTCAA
GTAAATAAGTTTTGAATTCAAAGACAAAAACTTGTTTACGAAATGACAAACTATATAGACCAAAT
GATGCGATTTCCCAAGCATGGAATGCTCAAAAAATTTCTCGTAAGGAATGGATCGTCTTGAATAA
TCTAAGAAACCAAAGTTATAAAATAATTATAAAAGTGTGACAAGTTCGGAAGTTCGTCCAAGAAC
CAAGAAAAAAACAATTCTCACATAAACAAGTTTTTAATTA
Found at i:44468 original size:190 final size:190
Alignment explanation
Indices: 44144--44684 Score: 888
Period size: 190 Copynumber: 2.8 Consensus size: 190
44134 CAACTATTCA
44144 TAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGCGAGAAACAATTCTCACATAAATAA
1 TAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGCGAGAAACAATTCTCACATAAATAA
* *
44209 GTTTTTAATTAAAAGACCAAAAGTTGTTTACGAAATGACAAACTATTTAGACCAAATGATACGAT
66 GTTTTTAATTAAAAGACCAAAAGTTGTTTACGAAATGACAAACTATTTAGACCAAACGATACAAT
44274 TTCTCGAGCATGGAATGCTC-AAAAATTTGCTTGAAGGAACTGAAGATATAAAAAACCTCG
131 TTCTCGAGCATGGAATGCTCGAAAAA-TTGCTTGAAGGAACTGAAGATATAAAAAACCTCG
44334 TAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGCGAGAAACAATTCTCACATAAATAA
1 TAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGCGAGAAACAATTCTCACATAAATAA
44399 GTTTTTAATTAAAAGACCAAAAGTTGTTTACGAAATGACAAACTATTTAGACCAAACGATACAAT
66 GTTTTTAATTAAAAGACCAAAAGTTGTTTACGAAATGACAAACTATTTAGACCAAACGATACAAT
44464 TTCTCGAGCATGGAATGCTCGAAAAATTGCTTGAAGGAACTGAAGATATAAAAAACCTCG
131 TTCTCGAGCATGGAATGCTCGAAAAATTGCTTGAAGGAACTGAAGATATAAAAAACCTCG
* * **
44524 TAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAA
1 TAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGCGAGAAACAATTCTCACATAAATAA
* ** * * * **
44589 GTTTTTAATTTAAAGTTCAAAACTTGTTTACAAAATGACGAACTATTTAGACC-AACTGATATGA
66 GTTTTTAATTAAAAGACCAAAAGTTGTTTACGAAATGACAAACTATTTAGACCAAAC-GATACAA
* * * *
44653 TTTCCCAAGCATGTAATGTTCGAAAAATTGCT
130 TTTCTCGAGCATGGAATGCTCGAAAAATTGCT
44685 CGTAGGAATG
Statistics
Matches: 331, Mismatches: 18, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
189 3 0.01
190 323 0.98
191 5 0.02
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.27
Consensus pattern (190 bp):
TAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGCGAGAAACAATTCTCACATAAATAA
GTTTTTAATTAAAAGACCAAAAGTTGTTTACGAAATGACAAACTATTTAGACCAAACGATACAAT
TTCTCGAGCATGGAATGCTCGAAAAATTGCTTGAAGGAACTGAAGATATAAAAAACCTCG
Found at i:44896 original size:216 final size:214
Alignment explanation
Indices: 44497--45800 Score: 1564
Period size: 216 Copynumber: 6.0 Consensus size: 214
44487 AAATTGCTTG
* * *
44497 AAGGAACTGAAGATATAAAAAACCTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCA
1 AAGGAACCGAAGTTATAAAAAA-CTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCA
* * ** *
44562 AGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTTAAAGTTCAAAACTTGTTTACAAAATGA
65 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGA
* * ** * * *
44627 CGAACTATTTAGACCAACTGATATGATTTCCCAAGCA-TGTAATGTTCGAAAAATTGCTCGTAGG
130 CAAACTATTTAGACCAAATGATGCGATTT-CC-GGCATTGGAATGTTCGAAAAATTGCTCGAAGG
*
44691 AATGGATCGTCTTGAACACTTT
193 AATGGATCGTCTTGAATACTTT
* * * *
44713 AAGGAACCGAAGTTATAAAATAACTAGTAAAAGTTTGACTAGTTCGGAAGTTCATCCAAGAACAA
1 AAGGAACCGAAGTTATAAAA-AACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCA
* * ** *
44778 AAAGAAAAACAATTCTCACGTAAATAAGTTTACAATTCAAAGACCAAAACTTGTTTACAAAATGA
65 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGA
* * * * *
44843 CAAACTATTTAGACCGAATGATGCGATTTCTCGGGATTGGAAAGTTTGAAAAATTGCTCGAAGAA
130 CAAACTATTTAGACCAAATGATGCGATTTC-CGGCATTGGAATGTTCGAAAAATTGCTCGAAGGA
*
44908 ATGGATCGTCTTGAATATTTT
194 ATGGATCGTCTTGAATACTTT
* * **
44929 AAGGAACCAAAGTTATAAACAAACTCGTAAAAGTTTGACAAATTCGAAAGTTTGTCCAAGAACCA
1 AAGGAACCGAAGTTATAAA-AAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCA
*
44994 AGAGAGAAACAATTCAT-ACGTAAATAAGTTTTTAATTCAAAGAGCAAAAGTTGTTTACAAAATG
65 AGAGAGAAACAATTC-TCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATG
* * *
45058 ACAAACTATTTAAACCAAATGATGCGAATTCCTGAGCATT-GAATGTTCG-AAAATTGCTCGTAG
129 ACAAACTATTTAGACCAAATGATGCGATTTCC-G-GCATTGGAATGTTCGAAAAATTGCTCGAAG
* *
45121 GAATGGATCGTCATGAACACTTT
192 GAATGGATCGTCTTGAATACTTT
*
45144 AAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTCGAAAGTTCATCCAAGAACCA
1 AAGGAACCGAAGTTATAAAA-AACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCA
* * *
45209 AGAGGGAAACAATTCTCACGTAAATAAGTTTTTAAATCAAAGACCAAAAGTTTTTTACAAAATGA
65 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGA
* * * *
45274 CAAACTATTTAGACGAAATGATGTGATTTCCCGAGCA-TGGAATGTTCAAAAAATAGCTCGAAGG
130 CAAACTATTTAGACCAAATGATGCGATTT-CCG-GCATTGGAATGTTCGAAAAATTGCTCGAAGG
* *
45338 AATGGATTGTCTCGAATACTTT
193 AATGGATCGTCTTGAATACTTT
* * *
45360 AAGGAATCGAAGTTATAAAATAACTCGTAAAAGTTTGAAAAATTC-AGAAGTTCATCCAAGAACC
1 AAGGAACCGAAGTTATAAAA-AACTCGTAAAAGTTTGACAAGTTCGA-AAGTTCATCCAAGAACC
* * * * *
45424 AAGAAAGAAACAATTCTCACATAAATAGGTTTTTAATTAAAAGACCAAAAGTTGTTTAAAAAATG
64 AAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATG
* * * * * *
45489 AAAAACTATTTAGACCAAATGATGCAAATTACCGATCA-TGGAATGTTCGAAAAATAGCTCAAAG
129 ACAAACTATTTAGACCAAATGATGC-GATTTCCG-GCATTGGAATGTTCGAAAAATTGCTCGAAG
*
45553 GAATGGATCATCTTGAATACTTT
192 GAATGGATCGTCTTGAATACTTT
** * * * * * **
45576 AAAAAATCGAAGTTATAAAAAGAACTCGT-AAAGGTTGATAAGTTTGGAAGTTTGTCCAAGAACC
1 AAGGAACCGAAGTTAT-AAAA-AACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACC
* * *
45640 AAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAAACCAAAAGTTGTTTAAAAAAAT
64 AAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT-ACAAAAT
* * * * * ** *
45705 GAAAAACTATTTAGATCAAATGATTTCAATTACCAATCA-TGGAATGTTCGAAAATTTGCTCGAA
128 GACAAACTATTTAGACCAAATGA-TGCGATTTCC-GGCATTGGAATGTTCGAAAAATTGCTCGAA
*
45769 GGAATGGATCGTCTTGAATATTTT
191 GGAATGGATCGTCTTGAATACTTT
*
45793 ATGGAACC
1 AAGGAACC
45801 AAAATTTTAG
Statistics
Matches: 945, Mismatches: 124, Indels: 37
0.85 0.11 0.03
Matches are distributed among these distances:
214 3 0.00
215 192 0.20
216 639 0.68
217 109 0.12
218 2 0.00
ACGTcount: A:0.42, C:0.14, G:0.17, T:0.27
Consensus pattern (214 bp):
AAGGAACCGAAGTTATAAAAAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAA
GAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAC
AAACTATTTAGACCAAATGATGCGATTTCCGGCATTGGAATGTTCGAAAAATTGCTCGAAGGAAT
GGATCGTCTTGAATACTTT
Found at i:45335 original size:431 final size:431
Alignment explanation
Indices: 44510--45803 Score: 1699
Period size: 431 Copynumber: 3.0 Consensus size: 431
44500 GAACTGAAGA
*
44510 TATAAAAAACCTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAAT
1 TATAAAAAA-CTCGTAAAAGTTTGACAAATTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAAT
* * ** * *
44575 TCTCATGTAAATAAGTTTTTAATTTAAAGTTCAAAACTTGTTTACAAAATGACGAACTATTTAGA
65 TCTCACGTAAATAAGTTTTTAATTAAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGA
* ** * *
44640 CCAACTGATATGATTTCCCAAGCA-TGTAATGTTCGAAAAATTGCTCGTAGGAATGGATCGTCTT
130 CCAAATGATGCGAATT-CCGAGCATTG-AATGTTCGAAAAATTGCTCGTAGGAATGGATCGTCTT
* *
44704 GAACACTTTAAGGAACCGAAGTTATAAAATAACTAGTAAAAGTTTGACTAGTTCGGAAGTTCATC
193 GAACACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTCGGAAGTTCATC
* * * ** * *
44769 CAAGAACAAAAAGAAAAACAATTCTCACGTAAATAAGTTTACAATTCAAAGACCAAAACTTGTTT
258 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTTTTT
* * * * *
44834 ACAAAATGACAAACTATTTAGACCG-AATGATGCGATTTCTCG-GGATTGGAAAGTTTGAAAAAT
323 ACAAAATGACAAACTATTTAGACCGAAATGATGTGATTTCCCGAGCA-TGGAATGTTCGAAAAAT
*
44897 TGCTCGAAGAAATGGATCGTCTTGAATATTTTAAGGAACCAAAGT
387 TGCTCGAAGGAATGGATCGTCTTGAATATTTTAAGGAACCAAAGT
*
44942 TATAAACAAACTCGTAAAAGTTTGACAAATTCGAAAGTTTGTCCAAGAACCAAGAGAGAAACAAT
1 TATAAA-AAACTCGTAAAAGTTTGACAAATTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAAT
* * *
45007 TCAT-ACGTAAATAAGTTTTTAATTCAAAGAGCAAAAGTTGTTTACAAAATGACAAACTATTTAA
65 TC-TCACGTAAATAAGTTTTTAATTAAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAG
*
45071 ACCAAATGATGCGAATTCCTGAGCATTGAATGTTCG-AAAATTGCTCGTAGGAATGGATCGTCAT
129 ACCAAATGATGCGAATTCC-GAGCATTGAATGTTCGAAAAATTGCTCGTAGGAATGGATCGTCTT
*
45135 GAACACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTCGAAAGTTCATC
193 GAACACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTCGGAAGTTCATC
* *
45200 CAAGAACCAAGAGGGAAACAATTCTCACGTAAATAAGTTTTTAAATCAAAGACCAAAAGTTTTTT
258 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTTTTT
* *
45265 ACAAAATGACAAACTATTTAGA-CGAAATGATGTGATTTCCCGAGCATGGAATGTTCAAAAAATA
323 ACAAAATGACAAACTATTTAGACCGAAATGATGTGATTTCCCGAGCATGGAATGTTCGAAAAATT
* * * * *
45329 GCTCGAAGGAATGGATTGTCTCGAATACTTTAAGGAATCGAAGT
388 GCTCGAAGGAATGGATCGTCTTGAATATTTTAAGGAACCAAAGT
* * *
45373 TATAAAATAACTCGTAAAAGTTTGAAAAATTC-AGAAGTTCATCCAAGAACCAAGAAAGAAACAA
1 TATAAAA-AACTCGTAAAAGTTTGACAAATTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAACAA
* * * *
45437 TTCTCACATAAATAGGTTTTTAATTAAAAGACCAAAAGTTGTTTAAAAAATGAAAAACTATTTAG
64 TTCTCACGTAAATAAGTTTTTAATTAAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAG
* * * * ** *
45502 ACCAAATGATGCAAATTACCGATCATGGAATGTTCGAAAAATAGCTCAAAGGAATGGATCATCTT
129 ACCAAATGATGCGAATT-CCGAGCATTGAATGTTCGAAAAATTGCTCGTAGGAATGGATCGTCTT
* ** * * * **
45567 GAATACTTTAAAAAATCGAAGTTATAAAAAGAACTCGT-AAAGGTTGA-TAAGTTTGGAAGTTTG
193 GAACACTTTAAGGAACCGAAGTTAT-AAAAGAACTCGTAAAAGTTTGACT-AGTTCGGAAGTTCA
* *
45630 TCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAAACCAAAAGTTGT
256 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTT-T
* * * * * * * * * *
45695 TTAAAAAAATGAAAAACTATTTAGATC-AAATGATTTCAATTACCAATCATGGAATGTTCGAAAA
320 TTTACAAAATGACAAACTATTTAGACCGAAATGATGTGATTTCCCGAGCATGGAATGTTCGAAAA
* *
45759 TTTGCTCGAAGGAATGGATCGTCTTGAATATTTTATGGAACCAAA
385 ATTGCTCGAAGGAATGGATCGTCTTGAATATTTTAAGGAACCAAA
45804 ATTTTAGTCT
Statistics
Matches: 757, Mismatches: 90, Indels: 29
0.86 0.10 0.03
Matches are distributed among these distances:
430 5 0.01
431 379 0.50
432 264 0.35
433 108 0.14
434 1 0.00
ACGTcount: A:0.42, C:0.14, G:0.16, T:0.28
Consensus pattern (431 bp):
TATAAAAAACTCGTAAAAGTTTGACAAATTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATT
CTCACGTAAATAAGTTTTTAATTAAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGAC
CAAATGATGCGAATTCCGAGCATTGAATGTTCGAAAAATTGCTCGTAGGAATGGATCGTCTTGAA
CACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTCGGAAGTTCATCCAA
GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTTTTTACA
AAATGACAAACTATTTAGACCGAAATGATGTGATTTCCCGAGCATGGAATGTTCGAAAAATTGCT
CGAAGGAATGGATCGTCTTGAATATTTTAAGGAACCAAAGT
Found at i:46455 original size:216 final size:215
Alignment explanation
Indices: 45805--47655 Score: 2066
Period size: 216 Copynumber: 8.6 Consensus size: 215
45795 GGAACCAAAA
* * ** * *
45805 TTTTAGTCTTTGAATTAGAAACTTATTTACCCGAGAATTGTCTCTCTCTTGGTTCTTGGATGAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * * * * *
45870 TTCCGCACTTGTCAAACTTTTACGAGTTCTTTTACAACTTCGG-TCACATAAAGTTTTCAAAATG
66 TTCCGAACTAGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC-CTTAAAGTATTCAAAACG
* ** * *
45934 ATCCATTCCTTCGAGAAATTTTCCGAACATTCCATGCTCG-GATAATCATACCATTTTGTCTAAA
130 ATCCATT-CTTCGAGCAATTTTCCGAACATTCCATGCTCGAGA-AATCGCATCATTTGGTCTAAA
* *
45998 TAGTTTGTGATTTCT-TAAACAAC
193 TAGTTTGTCATTT-TGTAAACAAG
* * * * * *
46021 TTTTGGTCTTTGAATTAAAAACTTATATACTTGACAATTTTTTTTCTCTTGGCTCTT--ATCGAA
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA-CGAA
* * * * *
46084 CTTCCGAACTTA-TCAAACTTTTACGAGTTCTTTTATAACTTCAGATCCTTAAA-TATTGAAGAT
65 CTTCCGAAC-TAGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAAAC
* * * * * * * * *
46147 G-TCCATTGTTCAAGCAATATTCAGAACATCCCATACTC-AGGTAATCGCATAATTTGATCTAAA
129 GATCCATTCTTCGAGCAATTTTCCGAACATTCCATGCTCGA-GAAATCGCATCATTTGGTCTAAA
* *
46210 TAGCTTGTAATTTTGTAAACAAG
193 TAGTTTGTCATTTTGTAAACAAG
* * * * *
46233 TTTTGGTCTTTGAATTAAAAACTTATTTACCTCAGAATTGTTTCTCACTTGGTTCTTGCAAGAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * *
46298 TTCCGAACTAGTCAAACTTTTACGAGTTATTTTACAACTTCGGTTCCTTAAAGTATTCAAGACGA
66 TTCCGAACTAGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAAACGA
** * * *
46363 TTTATTCTATCGAGCAATTTCCCGAACATTTCATGGTCGAGAAATCGCATCATTTGGTCTAAATA
131 TCCATTCT-TCGAGCAATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATA
*
46428 GTTTTTCATTTTGTAAACAAG
195 GTTTGTCATTTTGTAAACAAG
** *
46449 TTTTGGTCTTTGAATTAAAAACTTATTTATATGAGAATTGTTTCTC-C-TGGTTGTTGGACGAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * * *
46512 TTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAAATGA
66 TTCCGAACTAGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAAACGA
* * * * * *
46577 TCCATTCTTTTGAGCAATATTCTGAACATTCCATACTC-AGGAAATCGCTTAATTTGGTCTAAAT
131 TCCATTC-TTCGAGCAATTTTCCGAACATTCCATGCTCGA-GAAATCGCATCATTTGGTCTAAAT
46641 AGTTTGTCATTTTGTAAACAAG
194 AGTTTGTCATTTTGTAAACAAG
* * * * *
46663 TTTTGGTCTTTGAATTAAAAACTTAATTACATGAGAATTGTTTCTCTCTTGGTTCTTGCATGAAT
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * * *
46728 TTTCGAACTAGTCAAACTTTTACGAGTTCTTTCACAACTTCGGTTCCTTAAAGTATTCAAGACGA
66 TTCCGAACTAGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAAACGA
* * * *
46793 TCCATTCATTCGAGCAA-TTTCTC-AAGCATTTCATGCTCGGGAAATCACATCATTTGCTCTAAA
131 TCCATTC-TTCGAGCAATTTTC-CGAA-CATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAA
* *
46856 TAGTTTTTCATTTTGTAAACAAA
193 TAGTTTGTCATTTTGTAAACAAG
* ** *
46879 TTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATACTTTCTCTCTTGGTTCTTGGACAAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
** * * * * * *
46944 TTTTGAATTGGTAAAACTTTTATGAGTTATTTTATAACTTTGGTTCCTTAAAGTATTCAAAACGA
66 TTCCGAACTAGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAAACGA
* * ** * *
47009 TCCATTCCTTTGAGCAATTTACTAAACATTTCATGCTCGGGAAATCGCATCATTTGGTCTAAATA
131 TCCATT-CTTCGAGCAATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATA
47074 GTTTGTCATTTTGTAAACAAG
195 GTTTGTCATTTTGTAAACAAG
* * *
47095 TTTTGGTCTTTGAAATAAAAACTTATTTACGTGAGAATTGTTTCTCTATTGGTTCTTTGACGAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
** * * * *
47160 TTCAAAAC-ATGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAATTATTCAACACA
66 TTCCGAACTA-GTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAAACG
* * * * * *
47224 ATTCAATCCTTCAATCAAATTTTCTGAACATTCCATGCTCGAGAAATCGCATCATTTAGTCTAAA
130 A-TCCATTCTTCGAGC-AATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAA
* *
47289 TAGTTT-TTATTTTGTATACAAG
193 TAGTTTGTCATTTTGTAAACAAG
* * * **
47311 TTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTAT-T-TATTGGTTAGTGGACGAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * * ** * *
47374 TTCCAAACTAGTAAAACTTTTACGAGTTCCTTTATAACTTCAATTCCTTAAAGTATTCAAGATGA
66 TTCCGAACTAGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAAACGA
* * * * * *
47439 TTCATTCCTTCGAGCTATTTTCC-AAGCATTTCATGCTTGGGAAATCGCATCATTTGGTCTTAAT
131 TCCATT-CTTCGAGCAATTTTCCGAA-CATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAAT
* * *
47503 AATTTTTCATTTTGTAAACAAA
194 AGTTTGTCATTTTGTAAACAAG
* * * *
47525 TTTTGGTCTTCGAATTAAAAACTTATTTACTTGAAAATTGTTTCTCTCTTGTTTCTTGGACGAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * * * *
47590 TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTTCGTAAAGTATTTAAAACGA
66 TTCCGAACTAGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAAACGA
47655 T
131 T
47656 GATACGAAAA
Statistics
Matches: 1374, Mismatches: 229, Indels: 64
0.82 0.14 0.04
Matches are distributed among these distances:
211 1 0.00
212 110 0.08
213 103 0.07
214 330 0.24
215 62 0.05
216 708 0.52
217 60 0.04
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.40
Consensus pattern (215 bp):
TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
TTCCGAACTAGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAAACGA
TCCATTCTTCGAGCAATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAG
TTTGTCATTTTGTAAACAAG
Found at i:46718 original size:430 final size:429
Alignment explanation
Indices: 45805--47655 Score: 2161
Period size: 430 Copynumber: 4.3 Consensus size: 429
45795 GGAACCAAAA
* * * * * *
45805 TTTTAGTCTTTGAATTAGAAACTTATTTACCCGAGAATTGTCTCTCTCTTGGTTCTTGGATGAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACCTGAGAATTGTTTCTCTCTTGGTTCTTGCACGAAC
* * * * *
45870 TTCCGCACTTGTCAAACTTTTACGAGTTCTTTTACAACTTCGG-TCACATAAAGTTTTCAAAATG
66 TTCCGAACTAGTCAAACTTTTACGAGTTCTTTTACAACTTCGGTTC-CTTAAAGTATTCAAAACG
* * * * *
45934 ATCCATTCCTTCGAGAAATTTTCCGAACATTCCATGCTCG-GATAATCATACCATTTTGTCTAAA
130 ATCCATT-CTTCGAGCAATTTCCCGAACATTCCATGCTCGAGA-AATCACATCATTTGGTCTAAA
* * * * * * *
45998 TAGTTTGTGATTTCT-TAAACAACTTTTGGTCTTTGAATTAAAAACTTATATACTTGACAATTTT
193 TAGTTTTTCATTT-TGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAA--TT
* * * * *
46062 TTTTCTCTTGGCTCTT--ATCGAACTTCCGAACTTATCAAACTTTTACGAGTTCTTTTATAACTT
255 GTTTCTCCTGGTTCTTGGA-CGAACTTCCGAACTTGTAAAACTTTTACGAGTTCTTTTATAACTT
* * * * * *
46125 CAGA-TCCTTAAA-TATTGAAGATG-TCCATT-GTTCAAGCAATATTCAGAACATCCCATACTCA
319 C-GATTCCTTAAAGTATTCAAAATGATCCATTCCTTCGAGCAATATTCTGAACATTCCATACTCA
* * * *
46186 GGTAATCGCATAATTTGATCTAAATAGCTTGTAATTTTGTAAACAAG
383 GGAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
* * *
46233 TTTTGGTCTTTGAATTAAAAACTTATTTACCTCAGAATTGTTTCTCACTTGGTTCTTGCAAGAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACCTGAGAATTGTTTCTCTCTTGGTTCTTGCACGAAC
* *
46298 TTCCGAACTAGTCAAACTTTTACGAGTTATTTTACAACTTCGGTTCCTTAAAGTATTCAAGACGA
66 TTCCGAACTAGTCAAACTTTTACGAGTTCTTTTACAACTTCGGTTCCTTAAAGTATTCAAAACGA
** * * *
46363 TTTATTCTATCGAGCAATTTCCCGAACATTTCATGGTCGAGAAATCGCATCATTTGGTCTAAATA
131 TCCATTCT-TCGAGCAATTTCCCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATA
* **
46428 GTTTTTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTATATGAGAATTGTTTC
195 GTTTTTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
* * *
46493 TCCTGGTTGTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTC
260 TCCTGGTTCTTGGACGAACTTCCGAACTTGTAAAACTTTTACGAGTTCTTTTATAACTTCGATTC
* *
46558 CTTAAAGTATTCAAAATGATCCATTCTTTTGAGCAATATTCTGAACATTCCATACTCAGGAAATC
325 CTTAAAGTATTCAAAATGATCCATTCCTTCGAGCAATATTCTGAACATTCCATACTCAGGAAATC
*
46623 GCTTAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
390 GCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
* * * *
46663 TTTTGGTCTTTGAATTAAAAACTTAATTACATGAGAATTGTTTCTCTCTTGGTTCTTGCATGAAT
1 TTTTGGTCTTTGAATTAAAAACTTATTTACCTGAGAATTGTTTCTCTCTTGGTTCTTGCACGAAC
* * *
46728 TTTCGAACTAGTCAAACTTTTACGAGTTCTTTCACAACTTCGGTTCCTTAAAGTATTCAAGACGA
66 TTCCGAACTAGTCAAACTTTTACGAGTTCTTTTACAACTTCGGTTCCTTAAAGTATTCAAAACGA
* * * *
46793 TCCATTCATTCGAGCAATTTCTC-AAGCATTTCATGCTCGGGAAATCACATCATTTGCTCTAAAT
131 TCCATTC-TTCGAGCAATTTCCCGAA-CATTCCATGCTCGAGAAATCACATCATTTGGTCTAAAT
* **
46857 AGTTTTTCATTTTGTAAACAAATTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATACTTT
194 AGTTTTTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTT
* ** * * *
46922 CTCTCTTGGTTCTTGGACAAACTTTTGAA-TTGGTAAAACTTTTATGAGTTATTTTATAACTTTG
259 CTC-C-TGGTTCTTGGACGAACTTCCGAACTT-GTAAAACTTTTACGAGTTCTTTTATAACTTCG
* * * * * * *
46986 GTTCCTTAAAGTATTCAAAACGATCCATTCCTTTGAGCAAT-TTACTAAACATTTCATGCTCGGG
321 ATTCCTTAAAGTATTCAAAATGATCCATTCCTTCGAGCAATATT-CTGAACATTCCATACTCAGG
*
47050 AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
385 AAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
* * *
47095 TTTTGGTCTTTGAAATAAAAACTTATTTACGTGAGAATTGTTTCTCTATTGGTTCTTTG-ACGAA
1 TTTTGGTCTTTGAATTAAAAACTTATTTACCTGAGAATTGTTTCTCTCTTGGTTC-TTGCACGAA
** * * * *
47159 CTTCAAAAC-ATGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAATTATTCAACAC
65 CTTCCGAACTA-GTCAAACTTTTACGAGTTCTTTTACAACTTCGGTTCCTTAAAGTATTCAAAAC
* * * * * * * * *
47223 AATTCAATCCTTCAATCAAATTTTCTGAACATTCCATGCTCGAGAAATCGCATCATTTAGTCTAA
129 GA-TCCATTCTTCGAGC-AATTTCCCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAA
*
47288 ATAGTTTTT-ATTTTGTATACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGT
192 ATAGTTTTTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGT
** ** * * * *
47352 ATT-TATTGGTTAGTGGACGAACTTCCAAACTAGTAAAACTTTTACGAGTTCCTTTATAACTTCA
257 -TTCTCCTGGTTCTTGGACGAACTTCCGAACTTGTAAAACTTTTACGAGTTCTTTTATAACTTCG
* * * * * * * **
47416 ATTCCTTAAAGTATTCAAGATGATTCATTCCTTCGAGCTATTTTC-CAAGCATTTCATGCTTGGG
321 ATTCCTTAAAGTATTCAAAATGATCCATTCCTTCGAGCAATATTCTGAA-CATTCCATACTCAGG
* * * * *
47480 AAATCGCATCATTTGGTCTTAATAATTTTTCATTTTGTAAACAAA
385 AAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
* * * * *
47525 TTTTGGTCTTCGAATTAAAAACTTATTTACTTGAAAATTGTTTCTCTCTTGTTTCTTGGACGAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACCTGAGAATTGTTTCTCTCTTGGTTCTTGCACGAAC
* * * * * *
47590 TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTTCGTAAAGTATTTAAAACGA
66 TTCCGAACTAGTCAAACTTTTACGAGTTCTTTTACAACTTCGGTTCCTTAAAGTATTCAAAACGA
47655 T
131 T
47656 GATACGAAAA
Statistics
Matches: 1236, Mismatches: 160, Indels: 53
0.85 0.11 0.04
Matches are distributed among these distances:
426 16 0.01
427 55 0.04
428 220 0.18
429 18 0.01
430 549 0.44
431 10 0.01
432 311 0.25
433 55 0.04
434 2 0.00
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.40
Consensus pattern (429 bp):
TTTTGGTCTTTGAATTAAAAACTTATTTACCTGAGAATTGTTTCTCTCTTGGTTCTTGCACGAAC
TTCCGAACTAGTCAAACTTTTACGAGTTCTTTTACAACTTCGGTTCCTTAAAGTATTCAAAACGA
TCCATTCTTCGAGCAATTTCCCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAG
TTTTTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
CCTGGTTCTTGGACGAACTTCCGAACTTGTAAAACTTTTACGAGTTCTTTTATAACTTCGATTCC
TTAAAGTATTCAAAATGATCCATTCCTTCGAGCAATATTCTGAACATTCCATACTCAGGAAATCG
CATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
Found at i:47092 original size:646 final size:639
Alignment explanation
Indices: 45805--47655 Score: 2234
Period size: 646 Copynumber: 2.9 Consensus size: 639
45795 GGAACCAAAA
* * ** *
45805 TTTTAGTCTTTGAATTAGAAACTTATTTACCCGAGAATTGTCTCTCTCTTGGTTCTTGGATGAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGT-T-TCTCTTGGTTCTTGGACGAAC
* * * * * *
45870 TTCCGCACTTGTCAAACTTTTACGAGTTCTTTTACAACTTCGGTCACATAAAGTTTTCAAAATGA
64 TTCAGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGTTC-CTTAAAGTATTCAAAATGA
* * *
45935 TCCATTCCTTCGAGAAATTTTCCGAACATTCCATGCTCGGATAAT--CATACCATTTTGTCTAAA
128 TCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGGA-AATCGCATA--ATTTAGTCTAAA
* * * *
45998 TAGTTTGTGATTTCT-TAAACAACTTTTGGTCTTTGAATTAAAAACTT-ATATACTTGACAATTT
190 TAGTTTGTCATTT-TGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTAAT-TACATGAGAA-TT
* *
46061 TTTTTCTCTTGGCTCTT-ATCGAACTTCCGAACTTA-TCAAACTTTTACGAGTTCTTTTATAACT
252 GTTTTCTCTTGGTTCTTGAT-GAACTTCCGAAC-TAGTCAAACTTTTACGAGTTC-TTTATAACT
* * * * * * ** * *
46124 TCAGATCCTTAAA-TATTGAAGATG-TCCATT-GTTCAAGCAATATTCAGAACATCCCATACTCA
314 TCAGTTCCTTAAAGTATTCAAGATGATCCATTCATTCGAGCAATTTTCA-AGCATTTCATGCTCG
* * * * * *
46186 GGTAATCGCATAATTTGATCTAAATAGCTTGTAATTTTGTAAACAAGTTTTGGTCTTTGAATTAA
378 GGAAATCGCATCATTTGATCTAAATAGTTTTTCATTTTGTAAACAAATTTTGGTCTTTGAATTAA
* * * *
46251 AAACTTATTTACCTCAGAATTGTTTCTCACTTGGTTCTTGCA-AGAACTTCCGAACTAGTCAAAC
443 AAACTTATTTACCTGAGAATTGTTTCTCTCTTGGTTCTTGGACA-AACTTCCGAA-TTGTCAAAC
* * * **
46315 TTTTACGAGTTATTTTACAACTTCGGTTCCTTAAAGTATTCAAGACGATTTATTCTATCGAGCAA
506 TTTTACGAGTTATTTTATAACTTTGGTTCCTTAAAGTATTCAAAACGATCCATTCTATCGAGCAA
* * * *
46380 TTTCCCGAACATTTCATGGTCGAGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAA
571 TTTACCAAACATTTCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
46445 CAAG
636 CAAG
* * *
46449 TTTTGGTCTTTGAATTAAAAACTTATTTATATGAGAATTGTTTCTCCTGGTTGTTGGACGAACTT
1 TTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTTGGTTCTTGGACGAACTT
*
46514 CTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAAATGATC
66 CAGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG-TTCCTTAAAGTATTCAAAATGATC
* * * * * *
46579 CATTCTTTTGAGCAATATTCTGAACATTCCATACTCAGGAAATCGCTTAATTTGGTCTAAATAGT
130 CATTCCTTCGAGCAATTTTCTGAACATTCCATGCTC-GGAAATCGCATAATTTAGTCTAAATAGT
46644 TTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTAATTACATGAGAATTGTTTCTC
194 TTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTAATTACATGAGAATTGTTT-TC
* * * *
46709 TCTTGGTTCTTGCATGAATTTTCGAACTAGTCAAACTTTTACGAGTTCTTTCACAACTTCGGTTC
258 TCTTGGTTCTTG-ATGAACTTCCGAACTAGTCAAACTTTTACGAGTTCTTT-ATAACTTCAGTTC
*
46774 CTTAAAGTATTCAAGACGATCCATTCATTCGAGCAATTTCTCAAGCATTTCATGCTCGGGAAATC
321 CTTAAAGTATTCAAGATGATCCATTCATTCGAGCAATTT-TCAAGCATTTCATGCTCGGGAAATC
* * *
46839 ACATCATTTGCTCTAAATAGTTTTTCATTTTGTAAACAAATTTTAGTCTTTGAATTAAAAACTTA
385 GCATCATTTGATCTAAATAGTTTTTCATTTTGTAAACAAATTTTGGTCTTTGAATTAAAAACTTA
* ** ** * *
46904 TTTACGTGAGAATACTTTCTCTCTTGGTTCTTGGACAAACTTTTGAATTGGTAAAACTTTTATGA
450 TTTACCTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCGAATT-GTCAAACTTTTACGA
* *
46969 GTTATTTTATAACTTTGGTTCCTTAAAGTATTCAAAACGATCCATTCCT-TTGAGCAATTTACTA
514 GTTATTTTATAACTTTGGTTCCTTAAAGTATTCAAAACGATCCATT-CTATCGAGCAATTTACCA
*
47033 AACATTTCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
578 AACATTTCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
* * *
47095 TTTTGGTCTTTGAAATAAAAACTTATTTACGTGAGAATTGTTTCTCTATTGGTTCTTTGACGAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTC--TTGGTTCTTGGACGAAC
* * * * * **
47160 TTCAAAACATGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAATTATTCAACACAA
64 TTCAGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC-TTCGTTCCTTAAAGTATTCAAAATGA
* * * * *
47225 TTCAATCCTTCAATCAAATTTTCTGAACATTCCATGCTCGAGAAATCGCATCATTTAGTCTAAAT
128 TCCATTCCTTCGAGC-AATTTTCTGAACATTCCATGCTCG-GAAATCGCATAATTTAGTCTAAAT
* * * * * *
47290 AGTTT-TTATTTTGTATACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTAT
191 AGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTAATTACATGAGAATTGTTT
* * * * * * *
47354 T-TATTGGTTAGTGGACGAACTTCCAAACTAGTAAAACTTTTACGAGTTCCTTTATAACTTCAAT
256 TCTCTTGGTT-CTTGATGAACTTCCGAACTAGTCAAACTTTTACGAGTT-CTTTATAACTTCAGT
* * * *
47418 TCCTTAAAGTATTCAAGATGATTCATTCCTTCGAGCTATTTTCCAAGCATTTCATGCTTGGGAAA
319 TCCTTAAAGTATTCAAGATGATCCATTCATTCGAGCAATTTT-CAAGCATTTCATGCTCGGGAAA
* * * *
47483 TCGCATCATTTGGTCTTAATAATTTTTCATTTTGTAAACAAATTTTGGTCTTCGAATTAAAAACT
383 TCGCATCATTTGATCTAAATAGTTTTTCATTTTGTAAACAAATTTTGGTCTTTGAATTAAAAACT
* * * *
47548 TATTTACTTGAAAATTGTTTCTCTCTTGTTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
448 TATTTACCTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCGAA-TTGTCAAACTTTTAC
* * * *
47613 GAGTTCTTTTATAACTTTGGTTTCGTAAAGTATTTAAAACGAT
512 GAGTTATTTTATAACTTTGGTTCCTTAAAGTATTCAAAACGAT
47656 GATACGAAAA
Statistics
Matches: 1038, Mismatches: 142, Indels: 52
0.84 0.12 0.04
Matches are distributed among these distances:
641 6 0.01
642 188 0.18
643 52 0.05
644 50 0.05
645 8 0.01
646 539 0.52
647 15 0.01
648 130 0.13
649 50 0.05
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.40
Consensus pattern (639 bp):
TTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTTGGTTCTTGGACGAACTT
CAGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGTTCCTTAAAGTATTCAAAATGATCC
ATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGGAAATCGCATAATTTAGTCTAAATAGTTT
GTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTAATTACATGAGAATTGTTTTCTCT
TGGTTCTTGATGAACTTCCGAACTAGTCAAACTTTTACGAGTTCTTTATAACTTCAGTTCCTTAA
AGTATTCAAGATGATCCATTCATTCGAGCAATTTTCAAGCATTTCATGCTCGGGAAATCGCATCA
TTTGATCTAAATAGTTTTTCATTTTGTAAACAAATTTTGGTCTTTGAATTAAAAACTTATTTACC
TGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCGAATTGTCAAACTTTTACGAGTTATTT
TATAACTTTGGTTCCTTAAAGTATTCAAAACGATCCATTCTATCGAGCAATTTACCAAACATTTC
ATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
Found at i:47809 original size:19 final size:18
Alignment explanation
Indices: 47785--47830 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
47775 AATATTTTTT
*
47785 TATTTTTTTATTTTTCTTG
1 TATTTTTTT-TTTTTCTCG
47804 TATTTTTCTTTTTTTCTCG
1 TATTTTT-TTTTTTTCTCG
*
47823 AATTTTTT
1 TATTTTTT
47831 ATCACTTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 1 0.04
19 21 0.88
20 2 0.08
ACGTcount: A:0.11, C:0.09, G:0.04, T:0.76
Consensus pattern (18 bp):
TATTTTTTTTTTTTCTCG
Done.