Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010875.1 Kokia drynarioides strain JFW-HI SEQ_125843, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 15637
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.36

Warning! 33 characters in sequence are not A, C, G, or T


Found at i:3533 original size:17 final size:17

Alignment explanation


    Indices: 3511--3543  Score: 50
    Period size: 17  Copynumber: 1.9  Consensus size: 17

       3501 TATTTCATTT

                              
       3511 TATTTTTATTAA-ATTAA
          1 TATTTTT-TTAATATTAA

                            
       3528 TATTTTTTTAATATTA
          1 TATTTTTTTAATATTA

       3544 CTTTAGTCAA


Statistics
Matches: 15,  Mismatches: 0, Indels: 2
        0.88            0.00        0.12

Matches are distributed among these distances:
  16    4  0.27
  17   11  0.73

ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64


Consensus pattern (17 bp):   
TATTTTTTTAATATTAA

Found at i:3590 original size:34 final size:36

Alignment explanation


    Indices: 3521--3592  Score: 96
    Period size: 36  Copynumber: 2.1  Consensus size: 36

       3511 TATTTTTATT

                *                     *         
       3521 AAATTAATATTTTTTTAATATTACTTTAGTCAAATA
          1 AAATAAATATTTTTTTAATATTACTTGAGTCAAATA

                                                 
       3557 AAATAAATATTTTTTGT-ATATTA-TTGAGT-AAATA
          1 AAATAAATATTTTTT-TAATATTACTTGAGTCAAATA

              
       3591 AA
          1 AA

       3593 TATTTTTTTA


Statistics
Matches: 33,  Mismatches: 2, Indels: 4
        0.85            0.05        0.10

Matches are distributed among these distances:
  34    7  0.21
  35    5  0.15
  36   20  0.61
  37    1  0.03

ACGTcount: A:0.44, C:0.03, G:0.06, T:0.47


Consensus pattern (36 bp):   
AAATAAATATTTTTTTAATATTACTTGAGTCAAATA
Done.